RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC52A2Q9HAB3 445 aa25.83■■□□□ 1.73
CLN3-250ENST00000636839 BABAM1Q9NWV8 329 aa25.83■■□□□ 1.73
CLN3-250ENST00000636839 BCL9LQ86UU0 1499 aa25.83■■□□□ 1.72
CLN3-250ENST00000636839 SLC39A6Q13433 755 aa25.82■■□□□ 1.72
CLN3-250ENST00000636839 UNC5CLQ8IV45 518 aa25.82■■□□□ 1.72
CLN3-250ENST00000636839 SPATA31A5Q5VU36 1347 aa25.82■■□□□ 1.72
CLN3-250ENST00000636839 SPATA31A7Q8IWB4 1347 aa25.82■■□□□ 1.72
CLN3-250ENST00000636839 B4GALNT3Q6L9W6 998 aa25.81■■□□□ 1.72
CLN3-250ENST00000636839 PPP4R2Q9NY27 417 aa25.81■■□□□ 1.72
CLN3-250ENST00000636839 SHANK3Q9BYB0 1731 aa25.81■■□□□ 1.72
CLN3-250ENST00000636839 EIF4A1P60842 406 aaKnown RBP25.81■■□□□ 1.72
CLN3-250ENST00000636839 NECTIN2Q92692 538 aa25.81■■□□□ 1.72
CLN3-250ENST00000636839 ZNF428Q96B54 188 aa25.8■■□□□ 1.72
CLN3-250ENST00000636839 SCN11AQ9UI33 1791 aa25.8■■□□□ 1.72
CLN3-250ENST00000636839 HSP90AB1P08238 724 aaKnown RBP25.79■■□□□ 1.72
CLN3-250ENST00000636839 TRIM27P14373 513 aa25.79■■□□□ 1.72
CLN3-250ENST00000636839 ZKSCAN2Q63HK3 967 aa25.79■■□□□ 1.72
CLN3-250ENST00000636839 FNBP4Q8N3X1 1017 aaPredicted RBP25.79■■□□□ 1.72
CLN3-250ENST00000636839 COG6Q9Y2V7 657 aa25.78■■□□□ 1.72
CLN3-250ENST00000636839 NWD2Q9ULI1 1742 aa25.78■■□□□ 1.72
CLN3-250ENST00000636839 NKX1-1Q15270 411 aaPredicted RBP25.78■■□□□ 1.72
CLN3-250ENST00000636839 CABP4P57796 275 aa25.77■■□□□ 1.72
CLN3-250ENST00000636839 PDE3AQ14432 1141 aa25.77■■□□□ 1.72
CLN3-250ENST00000636839 MEX3CQ5U5Q3 659 aaKnown RBP25.77■■□□□ 1.72
CLN3-250ENST00000636839 SIPA1L3O60292 1781 aaPredicted RBP25.77■■□□□ 1.72
CLN3-250ENST00000636839 KDM3BQ7LBC6 1761 aa25.77■■□□□ 1.72
CLN3-250ENST00000636839 PRAMEF22A3QJZ6 481 aa25.76■■□□□ 1.71
CLN3-250ENST00000636839 USP21Q9UK80 565 aa25.76■■□□□ 1.71
CLN3-250ENST00000636839 EXOC5O00471 708 aa25.75■■□□□ 1.71
CLN3-250ENST00000636839 BRPF1P55201 1214 aaPredicted RBP25.75■■□□□ 1.71
CLN3-250ENST00000636839 ATF7IPQ6VMQ6 1270 aa25.75■■□□□ 1.71
CLN3-250ENST00000636839 ZNF790Q6PG37 636 aa25.74■■□□□ 1.71
CLN3-250ENST00000636839 SLC4A2P04920 1241 aa25.73■■□□□ 1.71
CLN3-250ENST00000636839 THRAP3Q9Y2W1 955 aaKnown RBP25.73■■□□□ 1.71
CLN3-250ENST00000636839 KIF16BQ96L93 1317 aa25.73■■□□□ 1.71
CLN3-250ENST00000636839 VPS72Q15906 364 aa25.73■■□□□ 1.71
CLN3-250ENST00000636839 FAM98CQ17RN3 349 aaKnown RBP25.73■■□□□ 1.71
CLN3-250ENST00000636839 DZIP1LQ8IYY4 767 aaKnown RBP25.73■■□□□ 1.71
CLN3-250ENST00000636839 EIF2S2P20042 333 aaKnown RBP25.72■■□□□ 1.71
CLN3-250ENST00000636839 G2E3Q7L622 706 aa25.72■■□□□ 1.71
CLN3-250ENST00000636839 MRC1P22897 1456 aa25.72■■□□□ 1.71
CLN3-250ENST00000636839 FTSJ3Q8IY81 847 aaKnown RBP25.7■■□□□ 1.7
CLN3-250ENST00000636839 ERVV-2B6SEH9 535 aa25.7■■□□□ 1.7
CLN3-250ENST00000636839 IPO8O15397 1037 aaKnown RBP25.7■■□□□ 1.7
CLN3-250ENST00000636839 GIGYF1O75420 1035 aaPredicted RBP25.7■■□□□ 1.7
CLN3-250ENST00000636839 DDB1Q16531 1140 aa25.7■■□□□ 1.7
CLN3-250ENST00000636839 BARGINQ6ZT62 677 aa25.7■■□□□ 1.7
CLN3-250ENST00000636839 ZNF496Q96IT1 587 aaPredicted RBP25.7■■□□□ 1.7
CLN3-250ENST00000636839 AFF2P51816 1311 aa25.69■■□□□ 1.7
CLN3-250ENST00000636839 HDGFL1Q5TGJ6 251 aa25.69■■□□□ 1.7
CLN3-250ENST00000636839 WNK3Q9BYP7 1800 aa25.69■■□□□ 1.7
CLN3-250ENST00000636839 HEG1Q9ULI3 1381 aa25.68■■□□□ 1.7
CLN3-250ENST00000636839 TMEM57Q8N5G2 664 aa25.68■■□□□ 1.7
CLN3-250ENST00000636839 CCDC136Q96JN2 1154 aa25.68■■□□□ 1.7
CLN3-250ENST00000636839 CDCA7Q9BWT1 371 aaPredicted RBP25.68■■□□□ 1.7
CLN3-250ENST00000636839 TOGARAM1Q9Y4F4 1720 aa25.67■■□□□ 1.7
CLN3-250ENST00000636839 CCDC30Q5VVM6 783 aa25.67■■□□□ 1.7
CLN3-250ENST00000636839 TNS2Q63HR2 1409 aa25.67■■□□□ 1.7
CLN3-250ENST00000636839 MARCH10Q8NA82 808 aaPredicted RBP25.66■■□□□ 1.7
CLN3-250ENST00000636839 ANXA1P04083 346 aa25.65■■□□□ 1.7
CLN3-250ENST00000636839 ARHGAP45Q92619 1136 aa25.65■■□□□ 1.7
CLN3-250ENST00000636839 MVPQ14764 893 aaKnown RBP25.64■■□□□ 1.7
CLN3-250ENST00000636839 STK31Q9BXU1 1019 aa25.64■■□□□ 1.7
CLN3-250ENST00000636839 ITPRIPQ8IWB1 547 aa25.64■■□□□ 1.69
CLN3-250ENST00000636839 TTC5Q8N0Z6 440 aa25.64■■□□□ 1.69
CLN3-250ENST00000636839 PIGBQ92521 554 aa25.64■■□□□ 1.69
CLN3-250ENST00000636839 CHPF2Q9P2E5 772 aa25.64■■□□□ 1.69
CLN3-250ENST00000636839 SOS1Q07889 1333 aaPredicted RBP25.63■■□□□ 1.69
CLN3-250ENST00000636839 TMOD3Q9NYL9 352 aa25.63■■□□□ 1.69
CLN3-250ENST00000636839 HOXB7P09629 217 aa25.62■■□□□ 1.69
CLN3-250ENST00000636839 PHAXQ9H814 394 aaKnown RBP25.62■■□□□ 1.69
CLN3-250ENST00000636839 RGS12O14924 1447 aa25.62■■□□□ 1.69
CLN3-250ENST00000636839 A0A0G2JS52 829 aa25.61■■□□□ 1.69
CLN3-250ENST00000636839 MYT1Q01538 1121 aa25.61■■□□□ 1.69
CLN3-250ENST00000636839 PROSER3Q2NL68 480 aa25.61■■□□□ 1.69
CLN3-250ENST00000636839 SYTL4Q96C24 671 aaPredicted RBP25.61■■□□□ 1.69
CLN3-250ENST00000636839 ASAP1Q9ULH1 1129 aa25.61■■□□□ 1.69
CLN3-250ENST00000636839 F6X3S4 739 aa25.6■■□□□ 1.69
CLN3-250ENST00000636839 PTCD1O75127 700 aaKnown RBP25.6■■□□□ 1.69
CLN3-250ENST00000636839 MS4A1P11836 297 aa25.6■■□□□ 1.69
CLN3-250ENST00000636839 USP16Q9Y5T5 823 aa25.6■■□□□ 1.69
CLN3-250ENST00000636839 PRIM1P49642 420 aaKnown RBP25.59■■□□□ 1.69
CLN3-250ENST00000636839 ACSBG1Q96GR2 724 aa25.59■■□□□ 1.69
CLN3-250ENST00000636839 GJD4Q96KN9 370 aaPredicted RBP25.59■■□□□ 1.69
CLN3-250ENST00000636839 FMNL2Q96PY5 1086 aa25.59■■□□□ 1.69
CLN3-250ENST00000636839 API5Q9BZZ5 524 aaKnown RBP25.59■■□□□ 1.69
CLN3-250ENST00000636839 ABCC4O15439 1325 aa25.59■■□□□ 1.69
CLN3-250ENST00000636839 KAT6BQ8WYB5 2073 aa25.59■■□□□ 1.69
CLN3-250ENST00000636839 FLIIQ13045 1269 aa25.59■■□□□ 1.69
CLN3-250ENST00000636839 PIP4K2AP48426 406 aaPredicted RBP25.57■■□□□ 1.68
CLN3-250ENST00000636839 C5P01031 1676 aa25.56■■□□□ 1.68
CLN3-250ENST00000636839 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.56■■□□□ 1.68
CLN3-250ENST00000636839 SNRPA1P09661 255 aaKnown RBP25.56■■□□□ 1.68
CLN3-250ENST00000636839 PTPRCP08575 1304 aa25.56■■□□□ 1.68
CLN3-250ENST00000636839 ATG3Q9NT62 314 aa25.56■■□□□ 1.68
CLN3-250ENST00000636839 GLI3P10071 1580 aa25.56■■□□□ 1.68
CLN3-250ENST00000636839 FKBP5Q13451 457 aaPredicted RBP25.55■■□□□ 1.68
CLN3-250ENST00000636839 FAM182BQ5T319 152 aa25.55■■□□□ 1.68
CLN3-250ENST00000636839 QTRT2Q9H974 415 aaKnown RBP25.55■■□□□ 1.68
CLN3-250ENST00000636839 PDIA6Q15084 440 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms