RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 LTKP29376 864 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 CSPP1Q1MSJ5 1256 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 RTF1Q92541 710 aaKnown RBP10.58□□□□□ -0.72
VCL-207ENST00000624354 RBM27Q9P2N5 1060 aaKnown RBP10.58□□□□□ -0.72
VCL-207ENST00000624354 MBD3O95983 291 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 GNAI2P04899 355 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 HDGFP51858 240 aaKnown RBP10.57□□□□□ -0.72
VCL-207ENST00000624354 XPCQ01831 940 aaPredicted RBP10.57□□□□□ -0.72
VCL-207ENST00000624354 TPRNQ4KMQ1 711 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 TMX3Q96JJ7 454 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 PDLIM2Q96JY6 352 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 TSPYL4Q9UJ04 414 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 TTC21BQ7Z4L5 1316 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 F6X3S4 739 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 LRSAM1Q6UWE0 723 aa10.57□□□□□ -0.72
VCL-207ENST00000624354 NOL7Q9UMY1 257 aaKnown RBP10.57□□□□□ -0.72
VCL-207ENST00000624354 HSP90AB2PQ58FF8 381 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 MIS18AQ9NYP9 233 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 PRR36Q9H6K5 1346 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 FOXD4L5Q5VV16 416 aaPredicted RBP10.56□□□□□ -0.72
VCL-207ENST00000624354 FOXD4L4Q8WXT5 416 aaPredicted RBP10.56□□□□□ -0.72
VCL-207ENST00000624354 CCDC94Q9BW85 323 aaPredicted RBP10.56□□□□□ -0.72
VCL-207ENST00000624354 TMEM63CQ9P1W3 806 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 EXOC6BQ9Y2D4 811 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 SYCE3A1L190 88 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 G2E3Q7L622 706 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 BBXQ8WY36 941 aaPredicted RBP10.56□□□□□ -0.72
VCL-207ENST00000624354 ESYT1Q9BSJ8 1104 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 STK31Q9BXU1 1019 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 LRRCC1Q9C099 1032 aa10.56□□□□□ -0.72
VCL-207ENST00000624354 CRB1P82279 1406 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 SPATA31D1Q6ZQQ2 1576 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 SETD1AO15047 1707 aaKnown RBP10.55□□□□□ -0.72
VCL-207ENST00000624354 ANAPC15P60006 121 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 SASS6Q6UVJ0 657 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 AK9Q5TCS8 1911 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 MON2Q7Z3U7 1717 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 GNAI3P08754 354 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 MX1P20591 662 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 ANO2Q9NQ90 1003 aa10.55□□□□□ -0.72
VCL-207ENST00000624354 TECPR2O15040 1411 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 ACEP12821 1306 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 NRKQ7Z2Y5 1582 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 TRIM6-TRIM34B2RNG4 842 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 BRD1O95696 1058 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 CUL4AQ13619 759 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 TSHZ3Q63HK5 1081 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 RILPL2Q969X0 211 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 INTS4Q96HW7 963 aaKnown RBP10.54□□□□□ -0.72
VCL-207ENST00000624354 CHAMP1Q96JM3 812 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 C3P01024 1663 aa10.54□□□□□ -0.72
VCL-207ENST00000624354 SYAP1Q96A49 352 aaPredicted RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 AGLP35573 1532 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 SALL3Q9BXA9 1300 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 FOXO3O43524 673 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 ZSCAN20P17040 1043 aaPredicted RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 MTHFSDQ2M296 383 aaKnown RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 C14orf37Q86TY3 774 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 NSFL1CQ9UNZ2 370 aaKnown RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 ZKSCAN5Q9Y2L8 839 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 OVOS2A0A0J9YW53 1432 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 OVOS2Q6IE36 1432 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 CHMLP26374 656 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 MCM5P33992 734 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 FKBP5Q13451 457 aaPredicted RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 NOL8Q76FK4 1167 aaKnown RBP10.53□□□□□ -0.72
VCL-207ENST00000624354 SRCIN1Q9C0H9 1055 aa10.53□□□□□ -0.72
VCL-207ENST00000624354 MAP3K19Q56UN5 1328 aa10.52□□□□□ -0.72
VCL-207ENST00000624354 PLEKHG3A1L390 1219 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 ATP8B2P98198 1209 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 CCDC39Q9UFE4 941 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 PALD1Q9ULE6 856 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 FLIIQ13045 1269 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 CCDC30Q5VVM6 783 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.52□□□□□ -0.73
VCL-207ENST00000624354 ARHGEF10O15013 1369 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 NRXN3Q9Y4C0 1643 aa10.52□□□□□ -0.73
VCL-207ENST00000624354 RNF214Q8ND24 703 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 SSH2Q76I76 1423 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 PNMA6EA0A0J9YXQ4 647 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 PPP4R3BQ5MIZ7 849 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 GTPBP4Q9BZE4 634 aaKnown RBP10.51□□□□□ -0.73
VCL-207ENST00000624354 TSPY26PQ9H489 355 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 STAP2Q9UGK3 403 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 ITSN1Q15811 1721 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 USP6P35125 1406 aa10.51□□□□□ -0.73
VCL-207ENST00000624354 USP31Q70CQ4 1352 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 ROBO2Q9HCK4 1378 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 PHF14O94880 888 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 UPF3BQ9BZI7 483 aaKnown RBP10.5□□□□□ -0.73
VCL-207ENST00000624354 AKAP12Q02952 1782 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 EPB41L2O43491 1005 aaKnown RBP10.5□□□□□ -0.73
VCL-207ENST00000624354 KIF20AO95235 890 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 NUTM2GQ5VZR2 741 aa10.5□□□□□ -0.73
VCL-207ENST00000624354 GTF2E1P29083 439 aaPredicted RBP10.5□□□□□ -0.73
VCL-207ENST00000624354 WDR33Q9C0J8 1336 aaKnown RBP10.49□□□□□ -0.73
VCL-207ENST00000624354 PTMAP06454 111 aaKnown RBP10.49□□□□□ -0.73
VCL-207ENST00000624354 LRRFIP2Q9Y608 721 aaKnown RBP10.49□□□□□ -0.73
VCL-207ENST00000624354 FLT4P35916 1363 aa10.49□□□□□ -0.73
VCL-207ENST00000624354 TNRQ92752 1358 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms