RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PHAXQ9H814 394 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 ARHGEF10O15013 1369 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 ERC2O15083 957 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 LRRCC1Q9C099 1032 aa15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 AKAP12Q02952 1782 aa15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 BAG4O95429 457 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 NEK4P51957 841 aa15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 LMOD2Q6P5Q4 547 aa15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 IGSF1Q8N6C5 1336 aa15.87■□□□□ 0.13
CCDC88A-214ENST00000621814 HDGFL1Q5TGJ6 251 aa15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 CEP170BQ9Y4F5 1589 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 ANXA1P04083 346 aa15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 THEMISQ8N1K5 641 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 ANO2Q9NQ90 1003 aa15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 TBX22Q9Y458 520 aa15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 FOXD4L6Q3SYB3 417 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 FOXD4L3Q6VB84 417 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-214ENST00000621814 NUTM1Q86Y26 1132 aa15.85■□□□□ 0.13
CCDC88A-214ENST00000621814 UBR1Q8IWV7 1749 aa15.85■□□□□ 0.13
CCDC88A-214ENST00000621814 MX1P20591 662 aa15.85■□□□□ 0.13
CCDC88A-214ENST00000621814 XPCQ01831 940 aaPredicted RBP15.85■□□□□ 0.13
CCDC88A-214ENST00000621814 TAF7Q15545 349 aaPredicted RBP15.85■□□□□ 0.13
CCDC88A-214ENST00000621814 GNAI3P08754 354 aa15.84■□□□□ 0.13
CCDC88A-214ENST00000621814 SKOR2Q2VWA4 1001 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-214ENST00000621814 UBTFL1P0CB47 393 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-214ENST00000621814 TPRNQ4KMQ1 711 aa15.84■□□□□ 0.13
CCDC88A-214ENST00000621814 LGR6Q9HBX8 967 aa15.83■□□□□ 0.12
CCDC88A-214ENST00000621814 CAVIN1Q6NZI2 390 aaKnown RBP15.83■□□□□ 0.12
CCDC88A-214ENST00000621814 UNC5CLQ8IV45 518 aa15.83■□□□□ 0.12
CCDC88A-214ENST00000621814 SSH2Q76I76 1423 aa15.83■□□□□ 0.12
CCDC88A-214ENST00000621814 PRPF40AO75400 957 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 SURF6O75683 361 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 TRIM44Q96DX7 344 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 NRKQ7Z2Y5 1582 aa15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 ATP8B2P98198 1209 aa15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 ESCO1Q5FWF5 840 aa15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 USP44Q9H0E7 712 aa15.82■□□□□ 0.12
CCDC88A-214ENST00000621814 KCNQ3O43525 872 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 LRRC59Q96AG4 307 aaKnown RBP15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 UPF3BQ9BZI7 483 aaKnown RBP15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 AK9Q5TCS8 1911 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 NUCB2P80303 420 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 PALD1Q9ULE6 856 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 KDRP35968 1356 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 PSME1Q06323 249 aa15.81■□□□□ 0.12
CCDC88A-214ENST00000621814 NBPF6Q5VWK0 638 aa15.8■□□□□ 0.12
CCDC88A-214ENST00000621814 MPRIPQ6WCQ1 1025 aa15.8■□□□□ 0.12
CCDC88A-214ENST00000621814 NBPF4Q96M43 638 aa15.8■□□□□ 0.12
CCDC88A-214ENST00000621814 MAP3K5Q99683 1374 aa15.8■□□□□ 0.12
CCDC88A-214ENST00000621814 ESYT1Q9BSJ8 1104 aa15.8■□□□□ 0.12
CCDC88A-214ENST00000621814 PPP1R42Q7Z4L9 355 aa15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 SRGAP3O43295 1099 aa15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 NBPF7P0C2Y1 421 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 CHPF2Q9P2E5 772 aa15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 PHF8Q9UPP1 1060 aa15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 LARP6Q9BRS8 491 aaKnown RBP15.79■□□□□ 0.12
CCDC88A-214ENST00000621814 TMX3Q96JJ7 454 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 NAP1L5Q96NT1 182 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 RBM27Q9P2N5 1060 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 PI4KAP2A4QPH2 592 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 HTATSF1O43719 755 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 CHMLP26374 656 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 OS9Q13438 667 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 PI4KAP1Q8N8J0 262 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 SRCIN1Q9C0H9 1055 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 OSBPL3Q9H4L5 887 aa15.78■□□□□ 0.12
CCDC88A-214ENST00000621814 MCCP23508 829 aa15.77■□□□□ 0.12
CCDC88A-214ENST00000621814 RGPD8O14715 1765 aaPredicted RBP15.77■□□□□ 0.12
CCDC88A-214ENST00000621814 PTMSP20962 102 aa15.77■□□□□ 0.11
CCDC88A-214ENST00000621814 TEFQ10587 303 aa15.77■□□□□ 0.11
CCDC88A-214ENST00000621814 KLHL40Q2TBA0 621 aa15.77■□□□□ 0.11
CCDC88A-214ENST00000621814 NASPP49321 788 aaPredicted RBP15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 IL25Q9H293 177 aa15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 DTNBO60941 627 aa15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 DIP2AQ14689 1571 aa15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 SETD1BQ9UPS6 1966 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 CWC22Q9HCG8 908 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 ZDHHC9Q9Y397 364 aa15.76■□□□□ 0.11
CCDC88A-214ENST00000621814 KIF13AQ9H1H9 1805 aa15.75■□□□□ 0.11
CCDC88A-214ENST00000621814 IBTKQ9P2D0 1353 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-214ENST00000621814 BTBD11A6QL63 1104 aa15.75■□□□□ 0.11
CCDC88A-214ENST00000621814 ZNF530Q6P9A1 599 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-214ENST00000621814 LMBRD1Q9NUN5 540 aa15.75■□□□□ 0.11
CCDC88A-214ENST00000621814 ANP32BQ92688 251 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-214ENST00000621814 TOPAZ1Q8N9V7 1692 aa15.74■□□□□ 0.11
CCDC88A-214ENST00000621814 RGPD1P0DJD0 1748 aa15.74■□□□□ 0.11
CCDC88A-214ENST00000621814 ERBB4Q15303 1308 aa15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 EIF4A1P60842 406 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 ZSCAN23Q3MJ62 389 aa15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 RHPN1Q8TCX5 695 aa15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 SOS1Q07889 1333 aaPredicted RBP15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 PRAMEF22A3QJZ6 481 aa15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 ESPNB1AK53 854 aa15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 AIMP1Q12904 312 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 CWC27Q6UX04 472 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-214ENST00000621814 SALL3Q9BXA9 1300 aa15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 CYP2E1P05181 493 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 GPT2Q8TD30 523 aa15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 DNAAF4Q8WXU2 420 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms