RNA–Protein interactions for RNA: ENST00000614237.1

SENP3-EIF4A1-201, Transcript of SENP3-EIF4A1 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2 BASIC

Gene SENP3-EIF4A1, Length 3,519 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1-201ENST00000614237 CHMP4AQ9BY43 222 aa13.47□□□□□ -0.25
SENP3-EIF4A1-201ENST00000614237 CRYBG1Q9Y4K1 1723 aa13.47□□□□□ -0.25
SENP3-EIF4A1-201ENST00000614237 DCCP43146 1447 aa13.47□□□□□ -0.25
SENP3-EIF4A1-201ENST00000614237 MCM4P33991 863 aa13.46□□□□□ -0.25
SENP3-EIF4A1-201ENST00000614237 FAM13BQ9NYF5 915 aa13.46□□□□□ -0.25
SENP3-EIF4A1-201ENST00000614237 CEP85Q6P2H3 762 aa13.46□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 OSBPL3Q9H4L5 887 aa13.46□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 FOXD4L5Q5VV16 416 aaPredicted RBP13.45□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 FOXD4L4Q8WXT5 416 aaPredicted RBP13.45□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 DDIT3P35638 169 aa13.44□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ABTB2Q8N961 1025 aa13.44□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 RGPD2P0DJD1 1756 aa13.44□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 HSP90AB1P08238 724 aaKnown RBP13.44□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 TSPYL4Q9UJ04 414 aa13.44□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 TAF7Q15545 349 aaPredicted RBP13.43□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 CCDC30Q5VVM6 783 aa13.43□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 PLEKHM2Q8IWE5 1019 aa13.43□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ANKRD45Q5TZF3 282 aa13.43□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 LNPKQ9C0E8 428 aa13.43□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 NUTM2FA1L443 756 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ESPNB1AK53 854 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ELL2O00472 640 aaPredicted RBP13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 HSCBQ8IWL3 235 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 IL17REQ8NFR9 667 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 COL18A1P39060 1754 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 HEG1Q9ULI3 1381 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 FOXO3O43524 673 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 GRPEL1Q9HAV7 217 aa13.41□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ERBB4Q15303 1308 aa13.41□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 TTC22Q5TAA0 569 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 HMMRO75330 724 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 CDC45O75419 566 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 KIF2CQ99661 725 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 PRDM10Q9NQV6 1147 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 KRT24Q2M2I5 525 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 FOXD4L6Q3SYB3 417 aaPredicted RBP13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 AMOTQ4VCS5 1084 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 FOXD4L3Q6VB84 417 aaPredicted RBP13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 ARHGEF25Q86VW2 580 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 IL17RAQ96F46 866 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 SALL3Q9BXA9 1300 aa13.4□□□□□ -0.26
SENP3-EIF4A1-201ENST00000614237 C1orf167Q5SNV9 1468 aa13.39□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 CIZ1Q9ULV3 898 aaPredicted RBP13.39□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 TBC1D9Q6ZT07 1266 aa13.39□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 APBB1O00213 710 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 EPB41L2O43491 1005 aaKnown RBP13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 GNAI3P08754 354 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 AKAP4Q5JQC9 854 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 KIAA1211Q6ZU35 1233 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 C1orf115Q9H7X2 142 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 GSPT1P15170 499 aaKnown RBP13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 STK31Q9BXU1 1019 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 R3HCC1Q9Y3T6 440 aaKnown RBP13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 AOX1Q06278 1338 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 SCN11AQ9UI33 1791 aa13.38□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 STRCP1A6NGW2 1772 aa13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 PKD1L3Q7Z443 1732 aa13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 PARP4Q9UKK3 1724 aaKnown RBP13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 FLIIQ13045 1269 aa13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 GAS2L3Q86XJ1 694 aa13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 ANP32BQ92688 251 aaKnown RBP13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 MEIS3Q99687 375 aa13.37□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 GNAI2P04899 355 aa13.36□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 CHMP5Q9NZZ3 219 aa13.36□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 ATP8B2P98198 1209 aa13.36□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 G2E3Q7L622 706 aa13.36□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 MRC1P22897 1456 aa13.36□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 CLCN1P35523 988 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 EIF4A1P60842 406 aaKnown RBP13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 PSME1Q06323 249 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 NBPF6Q5VWK0 638 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 NBPF4Q96M43 638 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 MRE11P49959 708 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 RBM42Q9BTD8 480 aaKnown RBP13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 STAP2Q9UGK3 403 aa13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 BCL11BQ9C0K0 894 aaPredicted RBP13.35□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 CLEC17AQ6ZS10 378 aa13.34□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 MSNP26038 577 aaKnown RBP13.34□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 PLEKHO1Q53GL0 409 aaPredicted RBP13.34□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 RGPD5Q99666 1765 aa13.34□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 C19orf44Q9H6X5 657 aa13.34□□□□□ -0.27
SENP3-EIF4A1-201ENST00000614237 GCP02774 474 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 RRP9O43818 475 aaKnown RBP13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 POLA2Q14181 598 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 ESCO1Q5FWF5 840 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 CHAMP1Q96JM3 812 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 SRCIN1Q9C0H9 1055 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 MIS18AQ9NYP9 233 aa13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 DDX49Q9Y6V7 483 aaKnown RBP13.33□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 NOL8Q76FK4 1167 aaKnown RBP13.32□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 SSH3Q8TE77 659 aa13.32□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 USP26Q9BXU7 913 aa13.32□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.32□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 XPCQ01831 940 aaPredicted RBP13.31□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 TNPO1Q92973 898 aaKnown RBP13.31□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 PODXL2Q9NZ53 605 aa13.31□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 RAB11FIP3O75154 756 aa13.31□□□□□ -0.28
SENP3-EIF4A1-201ENST00000614237 RNF214Q8ND24 703 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms