RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 FBLN1P23142 703 aa8.68□□□□□ -1.02
CUX1-220ENST00000607092 ATP6V1AP38606 617 aa8.68□□□□□ -1.02
CUX1-220ENST00000607092 RTCBQ9Y3I0 505 aaKnown RBP8.68□□□□□ -1.02
CUX1-220ENST00000607092 ERVV-2B6SEH9 535 aa8.67□□□□□ -1.02
CUX1-220ENST00000607092 PPM1GO15355 546 aaPredicted RBP8.67□□□□□ -1.02
CUX1-220ENST00000607092 APLP1P51693 650 aa8.67□□□□□ -1.02
CUX1-220ENST00000607092 TRAPPC3LQ5T215 181 aa8.67□□□□□ -1.02
CUX1-220ENST00000607092 RC3H1Q5TC82 1133 aaKnown RBP8.67□□□□□ -1.02
CUX1-220ENST00000607092 PKD1L3Q7Z443 1732 aa8.67□□□□□ -1.02
CUX1-220ENST00000607092 CCDC87Q9NVE4 849 aa8.67□□□□□ -1.02
CUX1-220ENST00000607092 TAF1LQ8IZX4 1826 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 KIF20BQ96Q89 1820 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 RGPD2P0DJD1 1756 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 MMP10P09238 476 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 PHKG2P15735 406 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 AMOTQ4VCS5 1084 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 DCAF5Q96JK2 942 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 EMILIN1Q9Y6C2 1016 aa8.66□□□□□ -1.02
CUX1-220ENST00000607092 TOMM70O94826 608 aa8.65□□□□□ -1.02
CUX1-220ENST00000607092 RFC4P35249 363 aa8.65□□□□□ -1.02
CUX1-220ENST00000607092 PLEKHO1Q53GL0 409 aaPredicted RBP8.65□□□□□ -1.02
CUX1-220ENST00000607092 C16orf71Q8IYS4 520 aaPredicted RBP8.65□□□□□ -1.02
CUX1-220ENST00000607092 EYA1Q99502 592 aa8.65□□□□□ -1.02
CUX1-220ENST00000607092 PARP3Q9Y6F1 533 aa8.65□□□□□ -1.02
CUX1-220ENST00000607092 UBR3Q6ZT12 1888 aa8.64□□□□□ -1.03
CUX1-220ENST00000607092 CNTNAP4Q9C0A0 1308 aa8.64□□□□□ -1.03
CUX1-220ENST00000607092 LINC00116Q8NCU8 138 aa8.64□□□□□ -1.03
CUX1-220ENST00000607092 ZNF526Q8TF50 670 aaPredicted RBP8.64□□□□□ -1.03
CUX1-220ENST00000607092 CICQ96RK0 1608 aaPredicted RBP8.64□□□□□ -1.03
CUX1-220ENST00000607092 ITGB4P16144 1822 aa8.64□□□□□ -1.03
CUX1-220ENST00000607092 KDM2BQ8NHM5 1336 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 CLSPNQ9HAW4 1339 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 RPS6KA4O75676 772 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 C1orf141Q5JVX7 400 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 CARD14Q9BXL6 1004 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 ATG3Q9NT62 314 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 POLKQ9UBT6 870 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 ASAP1Q9ULH1 1129 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 BCS1LQ9Y276 419 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 ANKRD26Q9UPS8 1709 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 C10orf71Q711Q0 1435 aa8.63□□□□□ -1.03
CUX1-220ENST00000607092 ZNF831Q5JPB2 1677 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 KIF3CO14782 793 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 FCHSD2O94868 740 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 CABP4P57796 275 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 ITPK1Q13572 414 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 ARHGAP27Q6ZUM4 889 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 RBM46Q8TBY0 533 aaKnown RBP8.62□□□□□ -1.03
CUX1-220ENST00000607092 RBM42Q9BTD8 480 aaKnown RBP8.62□□□□□ -1.03
CUX1-220ENST00000607092 PIM2Q9P1W9 311 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 TOGARAM1Q9Y4F4 1720 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 PXDNLA1KZ92 1463 aa8.62□□□□□ -1.03
CUX1-220ENST00000607092 KDRP35968 1356 aa8.61□□□□□ -1.03
CUX1-220ENST00000607092 MAP2P11137 1827 aaKnown RBP8.61□□□□□ -1.03
CUX1-220ENST00000607092 ZC3H4Q9UPT8 1303 aaKnown RBP8.61□□□□□ -1.03
CUX1-220ENST00000607092 FSTL1Q12841 308 aa8.61□□□□□ -1.03
CUX1-220ENST00000607092 EIF4A2Q14240 407 aaKnown RBP8.61□□□□□ -1.03
CUX1-220ENST00000607092 DALRD3Q5D0E6 543 aaKnown RBP8.61□□□□□ -1.03
CUX1-220ENST00000607092 ARHGEF1Q92888 912 aaKnown RBP8.61□□□□□ -1.03
CUX1-220ENST00000607092 GYS1P13807 737 aa8.6□□□□□ -1.03
CUX1-220ENST00000607092 MTHFSP49914 203 aa8.6□□□□□ -1.03
CUX1-220ENST00000607092 ZNF530Q6P9A1 599 aaPredicted RBP8.6□□□□□ -1.03
CUX1-220ENST00000607092 KIF13BQ9NQT8 1826 aa8.59□□□□□ -1.03
CUX1-220ENST00000607092 A0A0G2JLW4 131 aa8.59□□□□□ -1.03
CUX1-220ENST00000607092 AMIGO3Q86WK7 504 aa8.59□□□□□ -1.03
CUX1-220ENST00000607092 C4AP0C0L4 1744 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 ZPR1O75312 459 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 DPEP1P16444 411 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 TRIM26Q12899 539 aaPredicted RBP8.58□□□□□ -1.04
CUX1-220ENST00000607092 C9orf131Q5VYM1 1079 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 MORC1Q86VD1 984 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 WWC3Q9ULE0 1092 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 PDZRN3Q9UPQ7 1066 aa8.58□□□□□ -1.04
CUX1-220ENST00000607092 USP42Q9H9J4 1324 aaKnown RBP8.57□□□□□ -1.04
CUX1-220ENST00000607092 PTCD1O75127 700 aaKnown RBP8.57□□□□□ -1.04
CUX1-220ENST00000607092 TNNT2P45379 298 aaPredicted RBP8.57□□□□□ -1.04
CUX1-220ENST00000607092 CRKLP46109 303 aaKnown RBP8.57□□□□□ -1.04
CUX1-220ENST00000607092 EIF4G2P78344 907 aaKnown RBP eCLIP8.57□□□□□ -1.049e-7■■■■■ 41.3
CUX1-220ENST00000607092 SMC1BQ8NDV3 1235 aa8.57□□□□□ -1.04
CUX1-220ENST00000607092 AKAP4Q5JQC9 854 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 SMIM5Q71RC9 77 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 NFATC2IPQ8NCF5 419 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 POLR3GLQ9BT43 218 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 RNF181Q9P0P0 153 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 ZNF219Q9P2Y4 722 aaPredicted RBP8.56□□□□□ -1.04
CUX1-220ENST00000607092 KNSTRNQ9Y448 316 aa8.56□□□□□ -1.04
CUX1-220ENST00000607092 A0A087WZG4 1122 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 VSIG10Q8N0Z9 540 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 DNAJC5GQ8N7S2 189 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 KLRG1Q96E93 195 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 SLC4A9Q96Q91 983 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 NMRK2Q9NPI5 230 aa8.55□□□□□ -1.04
CUX1-220ENST00000607092 KDM6AO15550 1401 aaPredicted RBP8.54□□□□□ -1.04
CUX1-220ENST00000607092 COL5A3P25940 1745 aaPredicted RBP8.54□□□□□ -1.04
CUX1-220ENST00000607092 ARFGEF1Q9Y6D6 1849 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 STARD3NLO95772 234 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 LMNB1P20700 586 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 KCNA3P22001 575 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 SULT6B1Q6IMI4 303 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 NPM2Q86SE8 214 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms