RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 SYTL4Q96C24 671 aaPredicted RBP10.07□□□□□ -0.8
MSH6-211ENST00000606499 SLC52A2Q9HAB3 445 aa10.07□□□□□ -0.8
MSH6-211ENST00000606499 LY75O60449 1722 aa10.07□□□□□ -0.8
MSH6-211ENST00000606499 ERVV-2B6SEH9 535 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 CABP4P57796 275 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 NCBP3Q53F19 620 aaKnown RBP10.06□□□□□ -0.8
MSH6-211ENST00000606499 FAM196AQ6ZSG2 479 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 NGEFQ8N5V2 710 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 NFATC2IPQ8NCF5 419 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 TMOD3Q9NYL9 352 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 TJP1Q07157 1748 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 KAT6BQ8WYB5 2073 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 KCPQ6ZWJ8 1503 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 RGPD3A6NKT7 1758 aaPredicted RBP10.06□□□□□ -0.8
MSH6-211ENST00000606499 RGPD4Q7Z3J3 1758 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 ZBED9Q6R2W3 1325 aa10.06□□□□□ -0.8
MSH6-211ENST00000606499 PIGBQ92521 554 aa10.05□□□□□ -0.8
MSH6-211ENST00000606499 LAS1LQ9Y4W2 734 aaKnown RBP10.05□□□□□ -0.8
MSH6-211ENST00000606499 LAMB4A4D0S4 1761 aa10.05□□□□□ -0.8
MSH6-211ENST00000606499 CICQ96RK0 1608 aaPredicted RBP10.04□□□□□ -0.8
MSH6-211ENST00000606499 TRIM37O94972 964 aa10.04□□□□□ -0.8
MSH6-211ENST00000606499 PPP4R3CPQ6ZMV5 832 aa10.04□□□□□ -0.8
MSH6-211ENST00000606499 SPINK5Q9NQ38 1064 aaPredicted RBP10.04□□□□□ -0.8
MSH6-211ENST00000606499 MIS18AQ9NYP9 233 aa10.04□□□□□ -0.8
MSH6-211ENST00000606499 COL5A3P25940 1745 aaPredicted RBP10.04□□□□□ -0.8
MSH6-211ENST00000606499 ZNF831Q5JPB2 1677 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 CALD1Q05682 793 aaKnown RBP10.03□□□□□ -0.8
MSH6-211ENST00000606499 SLC39A6Q13433 755 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 TAF7Q15545 349 aaPredicted RBP10.03□□□□□ -0.8
MSH6-211ENST00000606499 ILDR2Q71H61 639 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 WDR63Q8IWG1 891 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 TSR2Q969E8 191 aaKnown RBP10.03□□□□□ -0.8
MSH6-211ENST00000606499 CDCA7LQ96GN5 454 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 ASAP1Q9ULH1 1129 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 IL16Q14005 1332 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 TAF1LQ8IZX4 1826 aa10.03□□□□□ -0.8
MSH6-211ENST00000606499 RREB1Q92766 1687 aa10.02□□□□□ -0.8
MSH6-211ENST00000606499 BTBD11A6QL63 1104 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 KCNQ3O43525 872 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 ZNF853P0CG23 659 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 GOLGA2Q08379 1002 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 CFAP44Q96MT7 982 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 BCL11BQ9C0K0 894 aaPredicted RBP10.02□□□□□ -0.81
MSH6-211ENST00000606499 MBIPQ9NS73 344 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 IFT57Q9NWB7 429 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 TSPYL4Q9UJ04 414 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 FANCIQ9NVI1 1328 aa10.02□□□□□ -0.81
MSH6-211ENST00000606499 PALLDQ8WX93 1383 aa10.01□□□□□ -0.81
MSH6-211ENST00000606499 CHL1O00533 1208 aa10.01□□□□□ -0.81
MSH6-211ENST00000606499 GNAI1P63096 354 aa10.01□□□□□ -0.81
MSH6-211ENST00000606499 ATG3Q9NT62 314 aa10.01□□□□□ -0.81
MSH6-211ENST00000606499 NUP188Q5SRE5 1749 aa10.01□□□□□ -0.81
MSH6-211ENST00000606499 PTCD1O75127 700 aaKnown RBP10□□□□□ -0.81
MSH6-211ENST00000606499 SLFN5Q08AF3 891 aa10□□□□□ -0.81
MSH6-211ENST00000606499 ZNF790Q6PG37 636 aa10□□□□□ -0.81
MSH6-211ENST00000606499 TTC5Q8N0Z6 440 aa10□□□□□ -0.81
MSH6-211ENST00000606499 E9PSI1 815 aa9.99□□□□□ -0.81
MSH6-211ENST00000606499 KRT24Q2M2I5 525 aa9.99□□□□□ -0.81
MSH6-211ENST00000606499 ZNF496Q96IT1 587 aaPredicted RBP9.99□□□□□ -0.81
MSH6-211ENST00000606499 MYH16Q9H6N6 1097 aa9.99□□□□□ -0.81
MSH6-211ENST00000606499 BABAM1Q9NWV8 329 aa9.99□□□□□ -0.81
MSH6-211ENST00000606499 APBA3O96018 575 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 EIF4A1P60842 406 aaKnown RBP9.98□□□□□ -0.81
MSH6-211ENST00000606499 DUSP27Q5VZP5 1158 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 TRMT2AQ8IZ69 625 aaKnown RBP9.98□□□□□ -0.81
MSH6-211ENST00000606499 SLC4A9Q96Q91 983 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 RBM42Q9BTD8 480 aaKnown RBP9.98□□□□□ -0.81
MSH6-211ENST00000606499 C4BP0C0L5 1744 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 HEG1Q9ULI3 1381 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 TUBGCP6Q96RT7 1819 aa9.98□□□□□ -0.81
MSH6-211ENST00000606499 PRAMEF22A3QJZ6 481 aa9.97□□□□□ -0.81
MSH6-211ENST00000606499 KCNQ4P56696 695 aa9.97□□□□□ -0.81
MSH6-211ENST00000606499 EXOSC9Q06265 439 aaKnown RBP9.97□□□□□ -0.81
MSH6-211ENST00000606499 C8orf58Q8NAV2 365 aa9.97□□□□□ -0.81
MSH6-211ENST00000606499 SMARCC1Q92922 1105 aaPredicted RBP9.97□□□□□ -0.81
MSH6-211ENST00000606499 FMNL2Q96PY5 1086 aa9.97□□□□□ -0.81
MSH6-211ENST00000606499 LOC102724428A0A0B4J2F2 783 aa9.96□□□□□ -0.82
MSH6-211ENST00000606499 ELL2O00472 640 aaPredicted RBP9.96□□□□□ -0.82
MSH6-211ENST00000606499 SIK1P57059 783 aa9.96□□□□□ -0.82
MSH6-211ENST00000606499 TSPYL6Q8N831 410 aa9.96□□□□□ -0.82
MSH6-211ENST00000606499 SF3B2Q13435 895 aaKnown RBP9.95□□□□□ -0.82
MSH6-211ENST00000606499 ITPK1Q13572 414 aa9.95□□□□□ -0.82
MSH6-211ENST00000606499 DEFB132Q7Z7B7 95 aa9.95□□□□□ -0.82
MSH6-211ENST00000606499 UPF1Q92900 1129 aaKnown RBP eCLIP9.95□□□□□ -0.82
MSH6-211ENST00000606499 CCNL1Q9UK58 526 aaPredicted RBP9.95□□□□□ -0.82
MSH6-211ENST00000606499 MYH14Q7Z406 1995 aaKnown RBP9.94□□□□□ -0.82
MSH6-211ENST00000606499 UBR3Q6ZT12 1888 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 C4AP0C0L4 1744 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 PLSCR1O15162 318 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 GIGYF1O75420 1035 aaPredicted RBP9.94□□□□□ -0.82
MSH6-211ENST00000606499 ATP6V1AP38606 617 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 EN1Q05925 392 aaPredicted RBP9.94□□□□□ -0.82
MSH6-211ENST00000606499 EZH2Q15910 746 aaKnown RBP9.94□□□□□ -0.82
MSH6-211ENST00000606499 TXNRD1Q16881 649 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 TWISTNBQ3B726 338 aaPredicted RBP9.94□□□□□ -0.82
MSH6-211ENST00000606499 DNAJC10Q8IXB1 793 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 PROM2Q8N271 834 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 LRRC4BQ9NT99 713 aa9.94□□□□□ -0.82
MSH6-211ENST00000606499 SNRPA1P09661 255 aaKnown RBP9.93□□□□□ -0.82
MSH6-211ENST00000606499 BAG6P46379 1132 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms