RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 RBM42Q9BTD8 480 aaKnown RBP19.28■□□□□ 0.68
TUBE1-208ENST00000604743 PNPLA7Q6ZV29 1317 aa19.27■□□□□ 0.68
TUBE1-208ENST00000604743 MSH5O43196 834 aa19.27■□□□□ 0.68
TUBE1-208ENST00000604743 ATP6V1AP38606 617 aa19.27■□□□□ 0.68
TUBE1-208ENST00000604743 RNMTO43148 476 aaKnown RBP19.26■□□□□ 0.67
TUBE1-208ENST00000604743 RALBP1Q15311 655 aa19.26■□□□□ 0.67
TUBE1-208ENST00000604743 RSPH6AQ9H0K4 717 aa19.26■□□□□ 0.67
TUBE1-208ENST00000604743 C4BP0C0L5 1744 aa19.25■□□□□ 0.67
TUBE1-208ENST00000604743 GAS2L2Q8NHY3 880 aa19.25■□□□□ 0.67
TUBE1-208ENST00000604743 PHACTR3Q96KR7 559 aa19.25■□□□□ 0.67
TUBE1-208ENST00000604743 AK7Q96M32 723 aa19.25■□□□□ 0.67
TUBE1-208ENST00000604743 MTFR1LQ9H019 292 aa19.25■□□□□ 0.67
TUBE1-208ENST00000604743 HMGB2P26583 209 aaKnown RBP19.24■□□□□ 0.67
TUBE1-208ENST00000604743 ITPK1Q13572 414 aa19.24■□□□□ 0.67
TUBE1-208ENST00000604743 LINC00116Q8NCU8 138 aa19.24■□□□□ 0.67
TUBE1-208ENST00000604743 SLC52A2Q9HAB3 445 aa19.24■□□□□ 0.67
TUBE1-208ENST00000604743 PTCD1O75127 700 aaKnown RBP19.23■□□□□ 0.67
TUBE1-208ENST00000604743 GNAT3A8MTJ3 354 aa19.22■□□□□ 0.67
TUBE1-208ENST00000604743 FCHSD2O94868 740 aa19.22■□□□□ 0.67
TUBE1-208ENST00000604743 COL23A1Q86Y22 540 aaPredicted RBP19.22■□□□□ 0.67
TUBE1-208ENST00000604743 MAP3K5Q99683 1374 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 PHF14O94880 888 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 PTGER2P43116 358 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 UBR3Q6ZT12 1888 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 SMIM5Q71RC9 77 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 SLC4A9Q96Q91 983 aa19.21■□□□□ 0.67
TUBE1-208ENST00000604743 SLC39A6Q13433 755 aa19.2■□□□□ 0.66
TUBE1-208ENST00000604743 IL17REQ8NFR9 667 aa19.19■□□□□ 0.66
TUBE1-208ENST00000604743 SLC16A10Q8TF71 515 aa19.19■□□□□ 0.66
TUBE1-208ENST00000604743 ADAMTS7Q9UKP4 1686 aa19.19■□□□□ 0.66
TUBE1-208ENST00000604743 MYBBP1AQ9BQG0 1328 aaKnown RBP19.19■□□□□ 0.66
TUBE1-208ENST00000604743 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
TUBE1-208ENST00000604743 GNPATO15228 680 aa19.18■□□□□ 0.66
TUBE1-208ENST00000604743 TEFQ10587 303 aa19.18■□□□□ 0.66
TUBE1-208ENST00000604743 AMIGO3Q86WK7 504 aa19.18■□□□□ 0.66
TUBE1-208ENST00000604743 MRC1P22897 1456 aa19.17■□□□□ 0.66
TUBE1-208ENST00000604743 NEFMP07197 916 aa19.17■□□□□ 0.66
TUBE1-208ENST00000604743 MSL1Q68DK7 614 aa19.17■□□□□ 0.66
TUBE1-208ENST00000604743 FLAD1Q8NFF5 587 aa19.17■□□□□ 0.66
TUBE1-208ENST00000604743 ZNF831Q5JPB2 1677 aa19.17■□□□□ 0.66
TUBE1-208ENST00000604743 COL5A3P25940 1745 aaPredicted RBP19.17■□□□□ 0.66
TUBE1-208ENST00000604743 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.16■□□□□ 0.66
TUBE1-208ENST00000604743 POLD1P28340 1107 aa19.16■□□□□ 0.66
TUBE1-208ENST00000604743 SGIP1Q9BQI5 828 aa19.16■□□□□ 0.66
TUBE1-208ENST00000604743 DLG5Q8TDM6 1919 aa19.15■□□□□ 0.66
TUBE1-208ENST00000604743 MYH14Q7Z406 1995 aaKnown RBP19.15■□□□□ 0.66
TUBE1-208ENST00000604743 RTF1Q92541 710 aaKnown RBP19.15■□□□□ 0.66
TUBE1-208ENST00000604743 ARXQ96QS3 562 aa19.15■□□□□ 0.66
TUBE1-208ENST00000604743 MCM10Q7L590 875 aa19.14■□□□□ 0.65
TUBE1-208ENST00000604743 KLHL34Q8N239 644 aa19.14■□□□□ 0.65
TUBE1-208ENST00000604743 PRKRIP1Q9H875 184 aaPredicted RBP19.14■□□□□ 0.65
TUBE1-208ENST00000604743 TJP1Q07157 1748 aa19.14■□□□□ 0.65
TUBE1-208ENST00000604743 SIPA1L3O60292 1781 aaPredicted RBP19.14■□□□□ 0.65
TUBE1-208ENST00000604743 SSFA2P28290 1259 aa19.13■□□□□ 0.65
TUBE1-208ENST00000604743 DCTN1Q14203 1278 aa19.13■□□□□ 0.65
TUBE1-208ENST00000604743 TTC5Q8N0Z6 440 aa19.13■□□□□ 0.65
TUBE1-208ENST00000604743 RTCBQ9Y3I0 505 aaKnown RBP19.13■□□□□ 0.65
TUBE1-208ENST00000604743 COL24A1Q17RW2 1714 aa19.12■□□□□ 0.65
TUBE1-208ENST00000604743 MAPK8IP3Q9UPT6 1336 aa19.12■□□□□ 0.65
TUBE1-208ENST00000604743 DNAJC10Q8IXB1 793 aa19.12■□□□□ 0.65
TUBE1-208ENST00000604743 FHDC1Q9C0D6 1143 aaPredicted RBP19.12■□□□□ 0.65
TUBE1-208ENST00000604743 CNTNAP4Q9C0A0 1308 aa19.11■□□□□ 0.65
TUBE1-208ENST00000604743 CRKLP46109 303 aaKnown RBP19.11■□□□□ 0.65
TUBE1-208ENST00000604743 TRAPPC3LQ5T215 181 aa19.11■□□□□ 0.65
TUBE1-208ENST00000604743 RC3H1Q5TC82 1133 aaKnown RBP19.11■□□□□ 0.65
TUBE1-208ENST00000604743 PLEKHF1Q96S99 279 aa19.11■□□□□ 0.65
TUBE1-208ENST00000604743 PNNQ9H307 717 aaKnown RBP19.11■□□□□ 0.65
TUBE1-208ENST00000604743 KCPQ6ZWJ8 1503 aa19.1■□□□□ 0.65
TUBE1-208ENST00000604743 CEMIPQ8WUJ3 1361 aa19.1■□□□□ 0.65
TUBE1-208ENST00000604743 UBR2Q8IWV8 1755 aa19.1■□□□□ 0.65
TUBE1-208ENST00000604743 BTBD11A6QL63 1104 aa19.09■□□□□ 0.65
TUBE1-208ENST00000604743 RPS6KA4O75676 772 aa19.09■□□□□ 0.65
TUBE1-208ENST00000604743 ZNF790Q6PG37 636 aa19.09■□□□□ 0.65
TUBE1-208ENST00000604743 WDR43Q15061 677 aaKnown RBP eCLIP19.08■□□□□ 0.64
TUBE1-208ENST00000604743 SYT17Q9BSW7 474 aa19.08■□□□□ 0.64
TUBE1-208ENST00000604743 KCNQ3O43525 872 aa19.07■□□□□ 0.64
TUBE1-208ENST00000604743 HTATSF1O43719 755 aaKnown RBP19.07■□□□□ 0.64
TUBE1-208ENST00000604743 NFE2L2Q16236 605 aa19.07■□□□□ 0.64
TUBE1-208ENST00000604743 CCDC146Q8IYE0 955 aa19.07■□□□□ 0.64
TUBE1-208ENST00000604743 ARHGEF1Q92888 912 aaKnown RBP19.07■□□□□ 0.64
TUBE1-208ENST00000604743 ZNF496Q96IT1 587 aaPredicted RBP19.07■□□□□ 0.64
TUBE1-208ENST00000604743 CICQ96RK0 1608 aaPredicted RBP19.07■□□□□ 0.64
TUBE1-208ENST00000604743 RFC4P35249 363 aa19.06■□□□□ 0.64
TUBE1-208ENST00000604743 CYP19A1P11511 503 aaPredicted RBP19.05■□□□□ 0.64
TUBE1-208ENST00000604743 INTS5Q6P9B9 1019 aaKnown RBP19.05■□□□□ 0.64
TUBE1-208ENST00000604743 VSIG10Q8N0Z9 540 aa19.05■□□□□ 0.64
TUBE1-208ENST00000604743 CCDC87Q9NVE4 849 aa19.05■□□□□ 0.64
TUBE1-208ENST00000604743 C4AP0C0L4 1744 aa19.05■□□□□ 0.64
TUBE1-208ENST00000604743 DCAF8L1A6NGE4 600 aa19.04■□□□□ 0.64
TUBE1-208ENST00000604743 ADRA2BP18089 450 aa19.04■□□□□ 0.64
TUBE1-208ENST00000604743 FMNL2Q96PY5 1086 aa19.04■□□□□ 0.64
TUBE1-208ENST00000604743 THUMPD2Q9BTF0 503 aaKnown RBP19.04■□□□□ 0.64
TUBE1-208ENST00000604743 HEG1Q9ULI3 1381 aa19.04■□□□□ 0.64
TUBE1-208ENST00000604743 RIPK4P57078 832 aa19.03■□□□□ 0.64
TUBE1-208ENST00000604743 MIS18AQ9NYP9 233 aa19.03■□□□□ 0.64
TUBE1-208ENST00000604743 ADAMTS8Q9UP79 889 aa19.03■□□□□ 0.64
TUBE1-208ENST00000604743 ZBTB1Q9Y2K1 713 aa19.03■□□□□ 0.64
TUBE1-208ENST00000604743 STARD3NLO95772 234 aa19.02■□□□□ 0.64
TUBE1-208ENST00000604743 CANXP27824 592 aaKnown RBP19.02■□□□□ 0.64
TUBE1-208ENST00000604743 TAF7Q15545 349 aaPredicted RBP19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms