RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
UPF1-208ENST00000600012 IFNL2Q8IZJ0 200 aa17.1■□□□□ 0.33
UPF1-208ENST00000600012 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.09■□□□□ 0.33
UPF1-208ENST00000600012 PHF14O94880 888 aa17.09■□□□□ 0.33
UPF1-208ENST00000600012 PHKG2P15735 406 aa17.09■□□□□ 0.33
UPF1-208ENST00000600012 SSFA2P28290 1259 aa17.09■□□□□ 0.33
UPF1-208ENST00000600012 AMIGO3Q86WK7 504 aa17.09■□□□□ 0.33
UPF1-208ENST00000600012 NPC1L1Q9UHC9 1359 aa17.07■□□□□ 0.32
UPF1-208ENST00000600012 EIF4A2Q14240 407 aaKnown RBP17.07■□□□□ 0.32
UPF1-208ENST00000600012 LINC00116Q8NCU8 138 aa17.07■□□□□ 0.32
UPF1-208ENST00000600012 ASAP1Q9ULH1 1129 aa17.07■□□□□ 0.32
UPF1-208ENST00000600012 TNNT2P45379 298 aaPredicted RBP17.06■□□□□ 0.32
UPF1-208ENST00000600012 ZNF831Q5JPB2 1677 aa17.06■□□□□ 0.32
UPF1-208ENST00000600012 IGSF1Q8N6C5 1336 aa17.05■□□□□ 0.32
UPF1-208ENST00000600012 ATP6V1AP38606 617 aa17.05■□□□□ 0.32
UPF1-208ENST00000600012 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 GNPATO15228 680 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 ITPK1Q13572 414 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 RALBP1Q15311 655 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 SMIM5Q71RC9 77 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 ATG3Q9NT62 314 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 ATP10DQ9P241 1426 aa17.04■□□□□ 0.32
UPF1-208ENST00000600012 KDRP35968 1356 aa17.03■□□□□ 0.32
UPF1-208ENST00000600012 MYBBP1AQ9BQG0 1328 aaKnown RBP17.02■□□□□ 0.32
UPF1-208ENST00000600012 ERVV-2B6SEH9 535 aa17.02■□□□□ 0.32
UPF1-208ENST00000600012 HSP90AB1P08238 724 aaKnown RBP17.02■□□□□ 0.32
UPF1-208ENST00000600012 COL5A3P25940 1745 aaPredicted RBP17.01■□□□□ 0.31
UPF1-208ENST00000600012 KIF13BQ9NQT8 1826 aa17.01■□□□□ 0.31
UPF1-208ENST00000600012 CCDC184Q52MB2 194 aa17.01■□□□□ 0.31
UPF1-208ENST00000600012 ADCY9O60503 1353 aa17.01■□□□□ 0.31
UPF1-208ENST00000600012 PLEKHO1Q53GL0 409 aaPredicted RBP17■□□□□ 0.31
UPF1-208ENST00000600012 DCAF5Q96JK2 942 aa17■□□□□ 0.31
UPF1-208ENST00000600012 AMOTQ4VCS5 1084 aa16.99■□□□□ 0.31
UPF1-208ENST00000600012 RTCBQ9Y3I0 505 aaKnown RBP16.99■□□□□ 0.31
UPF1-208ENST00000600012 KDM6AO15550 1401 aaPredicted RBP16.98■□□□□ 0.31
UPF1-208ENST00000600012 MMP10P09238 476 aa16.98■□□□□ 0.31
UPF1-208ENST00000600012 ZNF530Q6P9A1 599 aaPredicted RBP16.98■□□□□ 0.31
UPF1-208ENST00000600012 MORC1Q86VD1 984 aa16.98■□□□□ 0.31
UPF1-208ENST00000600012 GPBP1L1Q9HC44 474 aaPredicted RBP16.98■□□□□ 0.31
UPF1-208ENST00000600012 CICQ96RK0 1608 aaPredicted RBP16.97■□□□□ 0.31
UPF1-208ENST00000600012 ADRA2BP18089 450 aa16.97■□□□□ 0.31
UPF1-208ENST00000600012 TRAPPC3LQ5T215 181 aa16.97■□□□□ 0.31
UPF1-208ENST00000600012 RC3H1Q5TC82 1133 aaKnown RBP16.97■□□□□ 0.31
UPF1-208ENST00000600012 SLC4A9Q96Q91 983 aa16.97■□□□□ 0.31
UPF1-208ENST00000600012 RBM42Q9BTD8 480 aaKnown RBP16.97■□□□□ 0.31
UPF1-208ENST00000600012 MYH14Q7Z406 1995 aaKnown RBP16.97■□□□□ 0.31
UPF1-208ENST00000600012 CNTNAP4Q9C0A0 1308 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 KIAA1551Q9HCM1 1747 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 PPP2R1AP30153 589 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 CABP4P57796 275 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 NLGN1Q8N2Q7 840 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 MRS2Q9HD23 443 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 WWC3Q9ULE0 1092 aa16.96■□□□□ 0.31
UPF1-208ENST00000600012 C4AP0C0L4 1744 aa16.96■□□□□ 0.3
UPF1-208ENST00000600012 N4BP2Q86UW6 1770 aaPredicted RBP16.95■□□□□ 0.3
UPF1-208ENST00000600012 PXDNLA1KZ92 1463 aa16.95■□□□□ 0.3
UPF1-208ENST00000600012 C1orf141Q5JVX7 400 aa16.95■□□□□ 0.3
UPF1-208ENST00000600012 MTHFSP49914 203 aa16.94■□□□□ 0.3
UPF1-208ENST00000600012 AEBP1Q8IUX7 1158 aa16.94■□□□□ 0.3
UPF1-208ENST00000600012 SCN11AQ9UI33 1791 aa16.94■□□□□ 0.3
UPF1-208ENST00000600012 C10orf71Q711Q0 1435 aa16.94■□□□□ 0.3
UPF1-208ENST00000600012 RPS6KA4O75676 772 aa16.93■□□□□ 0.3
UPF1-208ENST00000600012 TGFB2P61812 414 aa16.93■□□□□ 0.3
UPF1-208ENST00000600012 ARHGEF1Q92888 912 aaKnown RBP16.93■□□□□ 0.3
UPF1-208ENST00000600012 RFC4P35249 363 aa16.92■□□□□ 0.3
UPF1-208ENST00000600012 SULT6B1Q6IMI4 303 aa16.92■□□□□ 0.3
UPF1-208ENST00000600012 ZNF526Q8TF50 670 aaPredicted RBP16.92■□□□□ 0.3
UPF1-208ENST00000600012 BRCA1P38398 1863 aaKnown RBP16.92■□□□□ 0.3
UPF1-208ENST00000600012 TJP1Q07157 1748 aa16.91■□□□□ 0.3
UPF1-208ENST00000600012 GYS1P13807 737 aa16.91■□□□□ 0.3
UPF1-208ENST00000600012 CCDC87Q9NVE4 849 aa16.91■□□□□ 0.3
UPF1-208ENST00000600012 PTCD1O75127 700 aaKnown RBP16.9■□□□□ 0.3
UPF1-208ENST00000600012 YTHDC1Q96MU7 727 aaKnown RBP16.9■□□□□ 0.3
UPF1-208ENST00000600012 VIRMAQ69YN4 1812 aaKnown RBP16.89■□□□□ 0.29
UPF1-208ENST00000600012 IL13P35225 146 aa16.89■□□□□ 0.29
UPF1-208ENST00000600012 CRKLP46109 303 aaKnown RBP16.89■□□□□ 0.29
UPF1-208ENST00000600012 NFATC2IPQ8NCF5 419 aa16.89■□□□□ 0.29
UPF1-208ENST00000600012 PARP3Q9Y6F1 533 aa16.89■□□□□ 0.29
UPF1-208ENST00000600012 A0A0G2JLW4 131 aa16.88■□□□□ 0.29
UPF1-208ENST00000600012 BCS1LQ9Y276 419 aa16.88■□□□□ 0.29
UPF1-208ENST00000600012 ARFGEF1Q9Y6D6 1849 aa16.88■□□□□ 0.29
UPF1-208ENST00000600012 DPEP1P16444 411 aa16.86■□□□□ 0.29
UPF1-208ENST00000600012 HSPA6P17066 643 aa16.86■□□□□ 0.29
UPF1-208ENST00000600012 AKAP4Q5JQC9 854 aa16.86■□□□□ 0.29
UPF1-208ENST00000600012 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
UPF1-208ENST00000600012 USP42Q9H9J4 1324 aaKnown RBP16.86■□□□□ 0.29
UPF1-208ENST00000600012 MRC1P22897 1456 aa16.86■□□□□ 0.29
UPF1-208ENST00000600012 ADAMTS7Q9UKP4 1686 aa16.85■□□□□ 0.29
UPF1-208ENST00000600012 KIF3CO14782 793 aa16.84■□□□□ 0.29
UPF1-208ENST00000600012 FCHSD2O94868 740 aa16.84■□□□□ 0.29
UPF1-208ENST00000600012 ARHGAP27Q6ZUM4 889 aa16.84■□□□□ 0.29
UPF1-208ENST00000600012 SLC52A2Q9HAB3 445 aa16.84■□□□□ 0.29
UPF1-208ENST00000600012 SRP68Q9UHB9 627 aaKnown RBP16.84■□□□□ 0.29
UPF1-208ENST00000600012 CEP350Q5VT06 3117 aa16.83■□□□□ 0.29
UPF1-208ENST00000600012 COL3A1P02461 1466 aaPredicted RBP16.83■□□□□ 0.28
UPF1-208ENST00000600012 FKBP8Q14318 412 aa16.83■□□□□ 0.28
UPF1-208ENST00000600012 PNISRQ8TF01 805 aaKnown RBP16.83■□□□□ 0.28
UPF1-208ENST00000600012 INTS5Q6P9B9 1019 aaKnown RBP16.82■□□□□ 0.28
UPF1-208ENST00000600012 KCNA3P22001 575 aa16.81■□□□□ 0.28
UPF1-208ENST00000600012 DDR1Q08345 913 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms