RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TRIM5Q9C035 493 aa24.01■■□□□ 1.43
UPF1-207ENST00000599848 IQCEQ6IPM2 695 aa24.01■■□□□ 1.43
UPF1-207ENST00000599848 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.01■■□□□ 1.43
UPF1-207ENST00000599848 KDM4AO75164 1064 aa24■■□□□ 1.43
UPF1-207ENST00000599848 NOM1Q5C9Z4 860 aaKnown RBP24■■□□□ 1.43
UPF1-207ENST00000599848 MPRIPQ6WCQ1 1025 aa24■■□□□ 1.43
UPF1-207ENST00000599848 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 TTF1Q15361 905 aaPredicted RBP23.99■■□□□ 1.43
UPF1-207ENST00000599848 DRC1Q96MC2 740 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 NAPBQ9H115 298 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 CCDC96Q2M329 555 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 POLA1P09884 1462 aaPredicted RBP23.99■■□□□ 1.43
UPF1-207ENST00000599848 FGFR1OPO95684 399 aaKnown RBP23.99■■□□□ 1.43
UPF1-207ENST00000599848 ME1P48163 572 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 JAKMIP3Q5VZ66 844 aa23.99■■□□□ 1.43
UPF1-207ENST00000599848 GLRX3O76003 335 aaKnown RBP23.99■■□□□ 1.43
UPF1-207ENST00000599848 MAGI1Q96QZ7 1491 aaPredicted RBP23.98■■□□□ 1.43
UPF1-207ENST00000599848 BAG4O95429 457 aaKnown RBP23.98■■□□□ 1.43
UPF1-207ENST00000599848 RRS1Q15050 365 aaKnown RBP23.98■■□□□ 1.43
UPF1-207ENST00000599848 NPHP3Q7Z494 1330 aa23.98■■□□□ 1.43
UPF1-207ENST00000599848 CCDC178Q5BJE1 867 aa23.98■■□□□ 1.43
UPF1-207ENST00000599848 TTC21AQ8NDW8 1320 aa23.98■■□□□ 1.43
UPF1-207ENST00000599848 GOLGA6L10A6NI86 522 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 SERPINC1P01008 464 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 HMGB1P09429 215 aaKnown RBP23.97■■□□□ 1.43
UPF1-207ENST00000599848 ARID3AQ99856 593 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 BRPF1P55201 1214 aaPredicted RBP23.97■■□□□ 1.43
UPF1-207ENST00000599848 TSG101Q99816 390 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 HSP90AA2PQ14568 343 aaPredicted RBP23.97■■□□□ 1.43
UPF1-207ENST00000599848 CCDC181Q5TID7 509 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 PLB1Q6P1J6 1458 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 GSE1Q14687 1217 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 STXBP4Q6ZWJ1 553 aa23.97■■□□□ 1.43
UPF1-207ENST00000599848 ZGPATQ8N5A5 531 aaKnown RBP23.96■■□□□ 1.43
UPF1-207ENST00000599848 CCDC97Q96F63 343 aaPredicted RBP23.96■■□□□ 1.43
UPF1-207ENST00000599848 DBF4Q9UBU7 674 aaPredicted RBP23.96■■□□□ 1.43
UPF1-207ENST00000599848 FOXO3O43524 673 aa23.95■■□□□ 1.42
UPF1-207ENST00000599848 NESP48681 1621 aa23.95■■□□□ 1.42
UPF1-207ENST00000599848 CCDC192P0DO97 292 aa23.94■■□□□ 1.42
UPF1-207ENST00000599848 PDRG1Q9NUG6 133 aa23.94■■□□□ 1.42
UPF1-207ENST00000599848 WASLO00401 505 aaPredicted RBP23.94■■□□□ 1.42
UPF1-207ENST00000599848 ZNF622Q969S3 477 aaKnown RBP eCLIP23.94■■□□□ 1.423e-7■■■□□ 15.5
UPF1-207ENST00000599848 LARP1BQ659C4 914 aaKnown RBP23.93■■□□□ 1.42
UPF1-207ENST00000599848 VPS36Q86VN1 386 aa23.93■■□□□ 1.42
UPF1-207ENST00000599848 LAMC3Q9Y6N6 1575 aa23.93■■□□□ 1.42
UPF1-207ENST00000599848 ZNF397Q8NF99 534 aaPredicted RBP23.93■■□□□ 1.42
UPF1-207ENST00000599848 GBP2P32456 591 aaPredicted RBP23.92■■□□□ 1.42
UPF1-207ENST00000599848 KIF5BP33176 963 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 CETN1Q12798 172 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 NBPF1Q3BBV0 1214 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 DUSP27Q5VZP5 1158 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 STK11IPQ8N1F8 1099 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 FAM135AQ9P2D6 1515 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 EPB41L2O43491 1005 aaKnown RBP23.92■■□□□ 1.42
UPF1-207ENST00000599848 SEPT11Q9NVA2 429 aaKnown RBP23.92■■□□□ 1.42
UPF1-207ENST00000599848 MYD88Q99836 296 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 TSPY26PQ9H489 355 aa23.92■■□□□ 1.42
UPF1-207ENST00000599848 SMTNL1A8MU46 457 aa23.91■■□□□ 1.42
UPF1-207ENST00000599848 OGFOD1Q8N543 542 aa23.91■■□□□ 1.42
UPF1-207ENST00000599848 PDZRN3Q9UPQ7 1066 aa23.91■■□□□ 1.42
UPF1-207ENST00000599848 PPM1FP49593 454 aaPredicted RBP23.91■■□□□ 1.42
UPF1-207ENST00000599848 TAF4BQ92750 862 aa23.91■■□□□ 1.42
UPF1-207ENST00000599848 MVPQ14764 893 aaKnown RBP23.91■■□□□ 1.42
UPF1-207ENST00000599848 TNRQ92752 1358 aa23.91■■□□□ 1.42
UPF1-207ENST00000599848 PDE4BQ07343 736 aa23.9■■□□□ 1.42
UPF1-207ENST00000599848 TSR2Q969E8 191 aaKnown RBP23.9■■□□□ 1.42
UPF1-207ENST00000599848 FERMT2Q96AC1 680 aa23.9■■□□□ 1.42
UPF1-207ENST00000599848 PYM1Q9BRP8 204 aaKnown RBP23.9■■□□□ 1.42
UPF1-207ENST00000599848 NSD3Q9BZ95 1437 aa23.9■■□□□ 1.42
UPF1-207ENST00000599848 NSD2O96028 1365 aa23.89■■□□□ 1.42
UPF1-207ENST00000599848 MINDY4BA8MYZ0 360 aa23.89■■□□□ 1.41
UPF1-207ENST00000599848 UQCRFS1P1P0C7P4 283 aa23.89■■□□□ 1.41
UPF1-207ENST00000599848 IBSPP21815 317 aaPredicted RBP23.89■■□□□ 1.41
UPF1-207ENST00000599848 SUPT6HQ7KZ85 1726 aaKnown RBP23.88■■□□□ 1.41
UPF1-207ENST00000599848 TNMDQ9H2S6 317 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 CCDC152Q4G0S7 254 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 TTLL5Q6EMB2 1281 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 LRRC27Q9C0I9 530 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 FIBPO43427 364 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 NBPF6Q5VWK0 638 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 NBPF5PQ86XG9 351 aaPredicted RBP23.88■■□□□ 1.41
UPF1-207ENST00000599848 IL27Q8NEV9 243 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 NBPF4Q96M43 638 aa23.88■■□□□ 1.41
UPF1-207ENST00000599848 ZNF710Q8N1W2 664 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 ALDH1L2Q3SY69 923 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 CATIPQ7Z7H3 387 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 NYXQ9GZU5 481 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 CLEC11AQ9Y240 323 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 MYCNP04198 464 aaPredicted RBP23.87■■□□□ 1.41
UPF1-207ENST00000599848 CHMP4BP1P59074 171 aa23.87■■□□□ 1.41
UPF1-207ENST00000599848 JAKMIP1Q96N16 626 aaKnown RBP23.86■■□□□ 1.41
UPF1-207ENST00000599848 FERMT1Q9BQL6 677 aa23.86■■□□□ 1.41
UPF1-207ENST00000599848 STK3Q13188 491 aa23.86■■□□□ 1.41
UPF1-207ENST00000599848 CWC25Q9NXE8 425 aaPredicted RBP23.86■■□□□ 1.41
UPF1-207ENST00000599848 CCDC194A0A1B0GVG4 234 aa23.86■■□□□ 1.41
UPF1-207ENST00000599848 EIF5P55010 431 aaKnown RBP23.86■■□□□ 1.41
UPF1-207ENST00000599848 ANAPC15P60006 121 aa23.86■■□□□ 1.41
UPF1-207ENST00000599848 DNAAF4Q8WXU2 420 aa23.86■■□□□ 1.41
UPF1-207ENST00000599848 CCDC85AQ96PX6 553 aaPredicted RBP23.86■■□□□ 1.41
UPF1-207ENST00000599848 C1orf115Q9H7X2 142 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms