RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 USHBP1Q8N6Y0 703 aa18.55■□□□□ 0.56
UPF1-204ENST00000596842 UNC5CLQ8IV45 518 aa18.55■□□□□ 0.56
UPF1-204ENST00000596842 OS9Q13438 667 aaPredicted RBP18.55■□□□□ 0.56
UPF1-204ENST00000596842 MAP3K19Q56UN5 1328 aa18.55■□□□□ 0.56
UPF1-204ENST00000596842 DIP2CQ9Y2E4 1556 aa18.54■□□□□ 0.56
UPF1-204ENST00000596842 FLIIQ13045 1269 aa18.54■□□□□ 0.56
UPF1-204ENST00000596842 SURF6O75683 361 aaKnown RBP18.54■□□□□ 0.56
UPF1-204ENST00000596842 PTPRCP08575 1304 aa18.54■□□□□ 0.56
UPF1-204ENST00000596842 CPS1P31327 1500 aa18.54■□□□□ 0.56
UPF1-204ENST00000596842 CCT4P50991 539 aaKnown RBP18.53■□□□□ 0.56
UPF1-204ENST00000596842 ESYT1Q9BSJ8 1104 aa18.53■□□□□ 0.56
UPF1-204ENST00000596842 ATP10DQ9P241 1426 aa18.53■□□□□ 0.56
UPF1-204ENST00000596842 ARHGAP31Q2M1Z3 1444 aa18.52■□□□□ 0.56
UPF1-204ENST00000596842 ANXA1P04083 346 aa18.52■□□□□ 0.56
UPF1-204ENST00000596842 PLCD3Q8N3E9 789 aa18.52■□□□□ 0.56
UPF1-204ENST00000596842 CHMP3Q9Y3E7 222 aa18.52■□□□□ 0.56
UPF1-204ENST00000596842 NLRP6P59044 892 aa18.52■□□□□ 0.55
UPF1-204ENST00000596842 ZNF445P59923 1031 aa18.51■□□□□ 0.55
UPF1-204ENST00000596842 PPP1R9BQ96SB3 815 aa18.51■□□□□ 0.55
UPF1-204ENST00000596842 UBTFL1P0CB47 393 aaPredicted RBP18.51■□□□□ 0.55
UPF1-204ENST00000596842 GADD45BO75293 160 aaPredicted RBP18.5■□□□□ 0.55
UPF1-204ENST00000596842 CPA1P15085 419 aa18.5■□□□□ 0.55
UPF1-204ENST00000596842 ZNF830Q96NB3 372 aaPredicted RBP18.5■□□□□ 0.55
UPF1-204ENST00000596842 ATP7BP35670 1465 aa18.5■□□□□ 0.55
UPF1-204ENST00000596842 CYP2E1P05181 493 aaPredicted RBP18.49■□□□□ 0.55
UPF1-204ENST00000596842 TMEM131LA2VDJ0 1609 aa18.49■□□□□ 0.55
UPF1-204ENST00000596842 FGD1P98174 961 aa18.49■□□□□ 0.55
UPF1-204ENST00000596842 EYA1Q99502 592 aa18.49■□□□□ 0.55
UPF1-204ENST00000596842 PHAXQ9H814 394 aaKnown RBP18.49■□□□□ 0.55
UPF1-204ENST00000596842 CDK12Q9NYV4 1490 aaPredicted RBP18.49■□□□□ 0.55
UPF1-204ENST00000596842 CHMLP26374 656 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 CEBPAP49715 358 aaPredicted RBP18.48■□□□□ 0.55
UPF1-204ENST00000596842 LRSAM1Q6UWE0 723 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 CWC27Q6UX04 472 aaKnown RBP18.48■□□□□ 0.55
UPF1-204ENST00000596842 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.48■□□□□ 0.55
UPF1-204ENST00000596842 SPG7Q9UQ90 795 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 FIBPO43427 364 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 RBM33Q96EV2 1170 aaKnown RBP18.48■□□□□ 0.55
UPF1-204ENST00000596842 GNAI3P08754 354 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 HDGFP51858 240 aaKnown RBP18.48■□□□□ 0.55
UPF1-204ENST00000596842 CCDC30Q5VVM6 783 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 IL25Q9H293 177 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 NEO1Q92859 1461 aa18.48■□□□□ 0.55
UPF1-204ENST00000596842 HDGFL1Q5TGJ6 251 aa18.47■□□□□ 0.55
UPF1-204ENST00000596842 CPSF1Q10570 1443 aaKnown RBP18.47■□□□□ 0.55
UPF1-204ENST00000596842 KIF20BQ96Q89 1820 aa18.47■□□□□ 0.55
UPF1-204ENST00000596842 SRGAP3O43295 1099 aa18.46■□□□□ 0.55
UPF1-204ENST00000596842 AATKQ6ZMQ8 1374 aa18.46■□□□□ 0.55
UPF1-204ENST00000596842 TPM2P07951 284 aa18.46■□□□□ 0.55
UPF1-204ENST00000596842 TSPY26PQ9H489 355 aa18.46■□□□□ 0.55
UPF1-204ENST00000596842 RGS12O14924 1447 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 UQCRHLA0A096LP55 91 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 UQCRHP07919 91 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 OFD1O75665 1012 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 CLEC17AQ6ZS10 378 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 KNDC1Q76NI1 1749 aa18.45■□□□□ 0.54
UPF1-204ENST00000596842 PREX1Q8TCU6 1659 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 A2ML1A8K2U0 1454 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 MBD3O95983 291 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 KCNJ4P48050 445 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 PPP1R42Q7Z4L9 355 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 USP48Q86UV5 1035 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 PDIA4P13667 645 aaKnown RBP18.44■□□□□ 0.54
UPF1-204ENST00000596842 USP25Q9UHP3 1055 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 ROBO2Q9HCK4 1378 aa18.44■□□□□ 0.54
UPF1-204ENST00000596842 CNPY2Q9Y2B0 182 aa18.43■□□□□ 0.54
UPF1-204ENST00000596842 LMOD2Q6P5Q4 547 aa18.43■□□□□ 0.54
UPF1-204ENST00000596842 ATP8B2P98198 1209 aa18.43■□□□□ 0.54
UPF1-204ENST00000596842 SYAP1Q96A49 352 aaPredicted RBP18.43■□□□□ 0.54
UPF1-204ENST00000596842 GNAT3A8MTJ3 354 aa18.42■□□□□ 0.54
UPF1-204ENST00000596842 C17orf53Q8N3J3 647 aaPredicted RBP18.42■□□□□ 0.54
UPF1-204ENST00000596842 DLG5Q8TDM6 1919 aa18.42■□□□□ 0.54
UPF1-204ENST00000596842 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.42■□□□□ 0.54
UPF1-204ENST00000596842 VPS37CA5D8V6 355 aaPredicted RBP18.42■□□□□ 0.54
UPF1-204ENST00000596842 PDCL3Q9H2J4 239 aa18.42■□□□□ 0.54
UPF1-204ENST00000596842 ANKRD26Q9UPS8 1709 aa18.42■□□□□ 0.54
UPF1-204ENST00000596842 VGLL3A8MV65 326 aa18.41■□□□□ 0.54
UPF1-204ENST00000596842 BRD1O95696 1058 aa18.41■□□□□ 0.54
UPF1-204ENST00000596842 NOL7Q9UMY1 257 aaKnown RBP18.41■□□□□ 0.54
UPF1-204ENST00000596842 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
UPF1-204ENST00000596842 MCM2P49736 904 aa18.41■□□□□ 0.54
UPF1-204ENST00000596842 ZKSCAN5Q9Y2L8 839 aa18.41■□□□□ 0.54
UPF1-204ENST00000596842 HCLS1P14317 486 aaPredicted RBP18.4■□□□□ 0.54
UPF1-204ENST00000596842 TAF7Q15545 349 aaPredicted RBP18.4■□□□□ 0.54
UPF1-204ENST00000596842 ABTB2Q8N961 1025 aa18.4■□□□□ 0.54
UPF1-204ENST00000596842 USP44Q9H0E7 712 aa18.4■□□□□ 0.54
UPF1-204ENST00000596842 KIAA0232Q92628 1395 aa18.4■□□□□ 0.54
UPF1-204ENST00000596842 CCDC39Q9UFE4 941 aa18.4■□□□□ 0.54
UPF1-204ENST00000596842 NBPF7P0C2Y1 421 aaPredicted RBP18.4■□□□□ 0.54
UPF1-204ENST00000596842 SMC3Q9UQE7 1217 aa18.4■□□□□ 0.54
UPF1-204ENST00000596842 CASTP20810 708 aaKnown RBP18.39■□□□□ 0.54
UPF1-204ENST00000596842 CCDC83Q8IWF9 413 aa18.39■□□□□ 0.54
UPF1-204ENST00000596842 TSC1Q92574 1164 aa18.39■□□□□ 0.54
UPF1-204ENST00000596842 JARID2Q92833 1246 aaPredicted RBP18.39■□□□□ 0.54
UPF1-204ENST00000596842 FAM177BA6PVY3 158 aa18.39■□□□□ 0.53
UPF1-204ENST00000596842 LTKP29376 864 aa18.39■□□□□ 0.53
UPF1-204ENST00000596842 DIAPH3Q9NSV4 1193 aa18.39■□□□□ 0.53
UPF1-204ENST00000596842 SRCIN1Q9C0H9 1055 aa18.39■□□□□ 0.53
UPF1-204ENST00000596842 TTC12Q9H892 705 aaPredicted RBP18.39■□□□□ 0.53
UPF1-204ENST00000596842 AMOTL2Q9Y2J4 779 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms