RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PNPLA7Q6ZV29 1317 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 MTHFSDQ2M296 383 aaKnown RBP21.71■■□□□ 1.07
TRIM28-206ENST00000595974 COL5A3P25940 1745 aaPredicted RBP21.71■■□□□ 1.07
TRIM28-206ENST00000595974 CICQ96RK0 1608 aaPredicted RBP21.7■■□□□ 1.06
TRIM28-206ENST00000595974 RALBP1Q15311 655 aa21.69■■□□□ 1.06
TRIM28-206ENST00000595974 GAS2L2Q8NHY3 880 aa21.69■■□□□ 1.06
TRIM28-206ENST00000595974 RSPH6AQ9H0K4 717 aa21.69■■□□□ 1.06
TRIM28-206ENST00000595974 U2AF1L5P0DN76 240 aaPredicted RBP21.68■■□□□ 1.06
TRIM28-206ENST00000595974 PRKAR2BP31323 418 aa21.68■■□□□ 1.06
TRIM28-206ENST00000595974 U2AF1Q01081 240 aaKnown RBP eCLIP21.68■■□□□ 1.065e-13■□□□□ 8.1
TRIM28-206ENST00000595974 SLC16A10Q8TF71 515 aa21.68■■□□□ 1.06
TRIM28-206ENST00000595974 PPP1R1BQ9UD71 204 aaPredicted RBP21.68■■□□□ 1.06
TRIM28-206ENST00000595974 MAP3K5Q99683 1374 aa21.68■■□□□ 1.06
TRIM28-206ENST00000595974 RNMTO43148 476 aaKnown RBP21.67■■□□□ 1.06
TRIM28-206ENST00000595974 SIPA1L3O60292 1781 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-206ENST00000595974 ATP6V1AP38606 617 aa21.66■■□□□ 1.06
TRIM28-206ENST00000595974 PTGER2P43116 358 aa21.66■■□□□ 1.06
TRIM28-206ENST00000595974 NFATC2IPQ8NCF5 419 aa21.66■■□□□ 1.06
TRIM28-206ENST00000595974 AK7Q96M32 723 aa21.66■■□□□ 1.06
TRIM28-206ENST00000595974 SLC52A2Q9HAB3 445 aa21.66■■□□□ 1.06
TRIM28-206ENST00000595974 ATF5Q9Y2D1 282 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-206ENST00000595974 FCHSD2O94868 740 aa21.65■■□□□ 1.06
TRIM28-206ENST00000595974 FLAD1Q8NFF5 587 aa21.65■■□□□ 1.06
TRIM28-206ENST00000595974 LGR6Q9HBX8 967 aa21.65■■□□□ 1.06
TRIM28-206ENST00000595974 UBR2Q8IWV8 1755 aa21.64■■□□□ 1.06
TRIM28-206ENST00000595974 TJP1Q07157 1748 aa21.64■■□□□ 1.06
TRIM28-206ENST00000595974 ITPK1Q13572 414 aa21.64■■□□□ 1.05
TRIM28-206ENST00000595974 LINC00116Q8NCU8 138 aa21.64■■□□□ 1.05
TRIM28-206ENST00000595974 SGIP1Q9BQI5 828 aa21.64■■□□□ 1.05
TRIM28-206ENST00000595974 GNAT3A8MTJ3 354 aa21.63■■□□□ 1.05
TRIM28-206ENST00000595974 RBM42Q9BTD8 480 aaKnown RBP21.63■■□□□ 1.05
TRIM28-206ENST00000595974 MYH14Q7Z406 1995 aaKnown RBP21.62■■□□□ 1.05
TRIM28-206ENST00000595974 MYBBP1AQ9BQG0 1328 aaKnown RBP21.61■■□□□ 1.05
TRIM28-206ENST00000595974 COL23A1Q86Y22 540 aaPredicted RBP21.61■■□□□ 1.05
TRIM28-206ENST00000595974 PHACTR3Q96KR7 559 aa21.61■■□□□ 1.05
TRIM28-206ENST00000595974 SLC4A9Q96Q91 983 aa21.61■■□□□ 1.05
TRIM28-206ENST00000595974 DLG5Q8TDM6 1919 aa21.61■■□□□ 1.05
TRIM28-206ENST00000595974 SSFA2P28290 1259 aa21.6■■□□□ 1.05
TRIM28-206ENST00000595974 KCPQ6ZWJ8 1503 aa21.6■■□□□ 1.05
TRIM28-206ENST00000595974 MSH5O43196 834 aa21.59■■□□□ 1.05
TRIM28-206ENST00000595974 PTCD1O75127 700 aaKnown RBP21.59■■□□□ 1.05
TRIM28-206ENST00000595974 CEMIPQ8WUJ3 1361 aa21.59■■□□□ 1.05
TRIM28-206ENST00000595974 CNTNAP4Q9C0A0 1308 aa21.58■■□□□ 1.05
TRIM28-206ENST00000595974 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.57■■□□□ 1.04
TRIM28-206ENST00000595974 GNPATO15228 680 aa21.57■■□□□ 1.04
TRIM28-206ENST00000595974 POLD1P28340 1107 aa21.57■■□□□ 1.04
TRIM28-206ENST00000595974 TEFQ10587 303 aa21.57■■□□□ 1.04
TRIM28-206ENST00000595974 IL17REQ8NFR9 667 aa21.57■■□□□ 1.04
TRIM28-206ENST00000595974 C4AP0C0L4 1744 aa21.56■■□□□ 1.04
TRIM28-206ENST00000595974 PHF14O94880 888 aa21.56■■□□□ 1.04
TRIM28-206ENST00000595974 NEFMP07197 916 aa21.56■■□□□ 1.04
TRIM28-206ENST00000595974 RC3H1Q5TC82 1133 aaKnown RBP21.56■■□□□ 1.04
TRIM28-206ENST00000595974 AMIGO3Q86WK7 504 aa21.56■■□□□ 1.04
TRIM28-206ENST00000595974 ARXQ96QS3 562 aa21.56■■□□□ 1.04
TRIM28-206ENST00000595974 SLC39A6Q13433 755 aa21.54■■□□□ 1.04
TRIM28-206ENST00000595974 PNNQ9H307 717 aaKnown RBP21.54■■□□□ 1.04
TRIM28-206ENST00000595974 RTF1Q92541 710 aaKnown RBP21.53■■□□□ 1.04
TRIM28-206ENST00000595974 PRKRIP1Q9H875 184 aaPredicted RBP21.53■■□□□ 1.04
TRIM28-206ENST00000595974 RTCBQ9Y3I0 505 aaKnown RBP21.53■■□□□ 1.04
TRIM28-206ENST00000595974 HTATSF1O43719 755 aaKnown RBP21.52■■□□□ 1.04
TRIM28-206ENST00000595974 ADRA2BP18089 450 aa21.52■■□□□ 1.04
TRIM28-206ENST00000595974 TTC5Q8N0Z6 440 aa21.52■■□□□ 1.04
TRIM28-206ENST00000595974 PLEKHF1Q96S99 279 aa21.52■■□□□ 1.04
TRIM28-206ENST00000595974 FHDC1Q9C0D6 1143 aaPredicted RBP21.52■■□□□ 1.04
TRIM28-206ENST00000595974 CRKLP46109 303 aaKnown RBP21.51■■□□□ 1.03
TRIM28-206ENST00000595974 MSL1Q68DK7 614 aa21.51■■□□□ 1.03
TRIM28-206ENST00000595974 VSIG10Q8N0Z9 540 aa21.51■■□□□ 1.03
TRIM28-206ENST00000595974 ZNF316A6NFI3 1004 aaPredicted RBP21.5■■□□□ 1.03
TRIM28-206ENST00000595974 RPS6KA4O75676 772 aa21.5■■□□□ 1.03
TRIM28-206ENST00000595974 SMIM5Q71RC9 77 aa21.5■■□□□ 1.03
TRIM28-206ENST00000595974 MAPK8IP3Q9UPT6 1336 aa21.5■■□□□ 1.03
TRIM28-206ENST00000595974 ZNF790Q6PG37 636 aa21.49■■□□□ 1.03
TRIM28-206ENST00000595974 SYT17Q9BSW7 474 aa21.49■■□□□ 1.03
TRIM28-206ENST00000595974 TRAPPC3LQ5T215 181 aa21.48■■□□□ 1.03
TRIM28-206ENST00000595974 DNAJC10Q8IXB1 793 aa21.48■■□□□ 1.03
TRIM28-206ENST00000595974 NFE2L2Q16236 605 aa21.47■■□□□ 1.03
TRIM28-206ENST00000595974 MCM10Q7L590 875 aa21.47■■□□□ 1.03
TRIM28-206ENST00000595974 HEG1Q9ULI3 1381 aa21.47■■□□□ 1.03
TRIM28-206ENST00000595974 BTBD11A6QL63 1104 aa21.46■■□□□ 1.03
TRIM28-206ENST00000595974 CCDC87Q9NVE4 849 aa21.46■■□□□ 1.03
TRIM28-206ENST00000595974 CYP19A1P11511 503 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-206ENST00000595974 INTS5Q6P9B9 1019 aaKnown RBP21.45■■□□□ 1.02
TRIM28-206ENST00000595974 ARHGEF1Q92888 912 aaKnown RBP21.45■■□□□ 1.02
TRIM28-206ENST00000595974 ZNF496Q96IT1 587 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-206ENST00000595974 KDM3BQ7LBC6 1761 aa21.45■■□□□ 1.02
TRIM28-206ENST00000595974 RFC4P35249 363 aa21.44■■□□□ 1.02
TRIM28-206ENST00000595974 DCTN1Q14203 1278 aa21.44■■□□□ 1.02
TRIM28-206ENST00000595974 WDR43Q15061 677 aaKnown RBP eCLIP21.44■■□□□ 1.02
TRIM28-206ENST00000595974 FMNL2Q96PY5 1086 aa21.44■■□□□ 1.02
TRIM28-206ENST00000595974 DCAF8L1A6NGE4 600 aa21.43■■□□□ 1.02
TRIM28-206ENST00000595974 SOS1Q07889 1333 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-206ENST00000595974 KLHL34Q8N239 644 aa21.42■■□□□ 1.02
TRIM28-206ENST00000595974 TEX13AQ9BXU3 409 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-206ENST00000595974 LAMB4A4D0S4 1761 aa21.41■■□□□ 1.02
TRIM28-206ENST00000595974 STARD3NLO95772 234 aa21.41■■□□□ 1.02
TRIM28-206ENST00000595974 KIF13BQ9NQT8 1826 aa21.41■■□□□ 1.02
TRIM28-206ENST00000595974 COL15A1P39059 1388 aa21.4■■□□□ 1.02
TRIM28-206ENST00000595974 USP42Q9H9J4 1324 aaKnown RBP21.4■■□□□ 1.02
TRIM28-206ENST00000595974 GYS1P13807 737 aa21.4■■□□□ 1.02
TRIM28-206ENST00000595974 NLGN1Q8N2Q7 840 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms