RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 VIRMAQ69YN4 1812 aaKnown RBP20.38■□□□□ 0.85
TRIM28-205ENST00000595028 SLC16A10Q8TF71 515 aa20.37■□□□□ 0.85
TRIM28-205ENST00000595028 DCAF5Q96JK2 942 aa20.37■□□□□ 0.85
TRIM28-205ENST00000595028 HMOX1P09601 288 aa20.36■□□□□ 0.85
TRIM28-205ENST00000595028 YBX3P16989 372 aaKnown RBP eCLIP20.36■□□□□ 0.85
TRIM28-205ENST00000595028 C4BP0C0L5 1744 aa20.36■□□□□ 0.85
TRIM28-205ENST00000595028 ATP10DQ9P241 1426 aa20.36■□□□□ 0.85
TRIM28-205ENST00000595028 PPP2R1AP30153 589 aa20.35■□□□□ 0.85
TRIM28-205ENST00000595028 C1orf141Q5JVX7 400 aa20.35■□□□□ 0.85
TRIM28-205ENST00000595028 ERVV-2B6SEH9 535 aa20.34■□□□□ 0.85
TRIM28-205ENST00000595028 GRIN3BO60391 1043 aa20.34■□□□□ 0.85
TRIM28-205ENST00000595028 ADAMTS7Q9UKP4 1686 aa20.34■□□□□ 0.85
TRIM28-205ENST00000595028 PNPLA7Q6ZV29 1317 aa20.33■□□□□ 0.85
TRIM28-205ENST00000595028 ZNF831Q5JPB2 1677 aa20.33■□□□□ 0.85
TRIM28-205ENST00000595028 HSPA6P17066 643 aa20.33■□□□□ 0.85
TRIM28-205ENST00000595028 CFAP53Q96M91 514 aa20.33■□□□□ 0.85
TRIM28-205ENST00000595028 MRC1P22897 1456 aa20.32■□□□□ 0.84
TRIM28-205ENST00000595028 UBR3Q6ZT12 1888 aa20.31■□□□□ 0.84
TRIM28-205ENST00000595028 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
TRIM28-205ENST00000595028 TFCP2L1Q9NZI6 479 aa20.31■□□□□ 0.84
TRIM28-205ENST00000595028 ASAP1Q9ULH1 1129 aa20.31■□□□□ 0.84
TRIM28-205ENST00000595028 LOC102724428A0A0B4J2F2 783 aa20.3■□□□□ 0.84
TRIM28-205ENST00000595028 HMGB2P26583 209 aaKnown RBP20.3■□□□□ 0.84
TRIM28-205ENST00000595028 SIK1P57059 783 aa20.3■□□□□ 0.84
TRIM28-205ENST00000595028 AKAP4Q5JQC9 854 aa20.3■□□□□ 0.84
TRIM28-205ENST00000595028 GPBP1L1Q9HC44 474 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-205ENST00000595028 ATG3Q9NT62 314 aa20.3■□□□□ 0.84
TRIM28-205ENST00000595028 COL5A3P25940 1745 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-205ENST00000595028 CABP4P57796 275 aa20.29■□□□□ 0.84
TRIM28-205ENST00000595028 CICQ96RK0 1608 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-205ENST00000595028 MTHFSDQ2M296 383 aaKnown RBP20.27■□□□□ 0.84
TRIM28-205ENST00000595028 NUDCQ9Y266 331 aa20.26■□□□□ 0.83
TRIM28-205ENST00000595028 ITPK1Q13572 414 aa20.25■□□□□ 0.83
TRIM28-205ENST00000595028 LINC00116Q8NCU8 138 aa20.25■□□□□ 0.83
TRIM28-205ENST00000595028 TJP1Q07157 1748 aa20.24■□□□□ 0.83
TRIM28-205ENST00000595028 ADCY9O60503 1353 aa20.24■□□□□ 0.83
TRIM28-205ENST00000595028 ZEB1P37275 1124 aaPredicted RBP20.24■□□□□ 0.83
TRIM28-205ENST00000595028 ATP6V1AP38606 617 aa20.24■□□□□ 0.83
TRIM28-205ENST00000595028 ZNF526Q8TF50 670 aaPredicted RBP20.24■□□□□ 0.83
TRIM28-205ENST00000595028 AK7Q96M32 723 aa20.24■□□□□ 0.83
TRIM28-205ENST00000595028 RSPH6AQ9H0K4 717 aa20.24■□□□□ 0.83
TRIM28-205ENST00000595028 RNMTO43148 476 aaKnown RBP20.23■□□□□ 0.83
TRIM28-205ENST00000595028 COL23A1Q86Y22 540 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-205ENST00000595028 NFATC2IPQ8NCF5 419 aa20.23■□□□□ 0.83
TRIM28-205ENST00000595028 GAS2L2Q8NHY3 880 aa20.23■□□□□ 0.83
TRIM28-205ENST00000595028 SIPA1L3O60292 1781 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-205ENST00000595028 PRKAR2BP31323 418 aa20.22■□□□□ 0.83
TRIM28-205ENST00000595028 DDX10Q13206 875 aaKnown RBP20.22■□□□□ 0.83
TRIM28-205ENST00000595028 SLC4A9Q96Q91 983 aa20.22■□□□□ 0.83
TRIM28-205ENST00000595028 SLC52A2Q9HAB3 445 aa20.22■□□□□ 0.83
TRIM28-205ENST00000595028 LGR6Q9HBX8 967 aa20.22■□□□□ 0.83
TRIM28-205ENST00000595028 UBR2Q8IWV8 1755 aa20.21■□□□□ 0.83
TRIM28-205ENST00000595028 U2AF1L5P0DN76 240 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-205ENST00000595028 U2AF1Q01081 240 aaKnown RBP eCLIP20.21■□□□□ 0.83
TRIM28-205ENST00000595028 FLAD1Q8NFF5 587 aa20.21■□□□□ 0.83
TRIM28-205ENST00000595028 RBM42Q9BTD8 480 aaKnown RBP20.21■□□□□ 0.83
TRIM28-205ENST00000595028 AMIGO3Q86WK7 504 aa20.2■□□□□ 0.82
TRIM28-205ENST00000595028 MYH14Q7Z406 1995 aaKnown RBP20.19■□□□□ 0.82
TRIM28-205ENST00000595028 KCPQ6ZWJ8 1503 aa20.19■□□□□ 0.82
TRIM28-205ENST00000595028 MSH5O43196 834 aa20.19■□□□□ 0.82
TRIM28-205ENST00000595028 RALBP1Q15311 655 aa20.19■□□□□ 0.82
TRIM28-205ENST00000595028 GNPATO15228 680 aa20.18■□□□□ 0.82
TRIM28-205ENST00000595028 SSFA2P28290 1259 aa20.18■□□□□ 0.82
TRIM28-205ENST00000595028 PHACTR3Q96KR7 559 aa20.18■□□□□ 0.82
TRIM28-205ENST00000595028 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.17■□□□□ 0.82
TRIM28-205ENST00000595028 GNAT3A8MTJ3 354 aa20.17■□□□□ 0.82
TRIM28-205ENST00000595028 PTCD1O75127 700 aaKnown RBP20.17■□□□□ 0.82
TRIM28-205ENST00000595028 FCHSD2O94868 740 aa20.17■□□□□ 0.82
TRIM28-205ENST00000595028 PHF14O94880 888 aa20.17■□□□□ 0.82
TRIM28-205ENST00000595028 CNTNAP4Q9C0A0 1308 aa20.17■□□□□ 0.82
TRIM28-205ENST00000595028 C4AP0C0L4 1744 aa20.16■□□□□ 0.82
TRIM28-205ENST00000595028 MSL1Q68DK7 614 aa20.16■□□□□ 0.82
TRIM28-205ENST00000595028 CEMIPQ8WUJ3 1361 aa20.15■□□□□ 0.82
TRIM28-205ENST00000595028 SMIM5Q71RC9 77 aa20.14■□□□□ 0.81
TRIM28-205ENST00000595028 CD2APQ9Y5K6 639 aa20.14■□□□□ 0.81
TRIM28-205ENST00000595028 DLG5Q8TDM6 1919 aa20.14■□□□□ 0.81
TRIM28-205ENST00000595028 KIF3CO14782 793 aa20.13■□□□□ 0.81
TRIM28-205ENST00000595028 SLC39A6Q13433 755 aa20.13■□□□□ 0.81
TRIM28-205ENST00000595028 RC3H1Q5TC82 1133 aaKnown RBP20.13■□□□□ 0.81
TRIM28-205ENST00000595028 IL17REQ8NFR9 667 aa20.13■□□□□ 0.81
TRIM28-205ENST00000595028 MYBBP1AQ9BQG0 1328 aaKnown RBP20.12■□□□□ 0.81
TRIM28-205ENST00000595028 TEFQ10587 303 aa20.12■□□□□ 0.81
TRIM28-205ENST00000595028 APLP1P51693 650 aa20.11■□□□□ 0.81
TRIM28-205ENST00000595028 RTCBQ9Y3I0 505 aaKnown RBP20.11■□□□□ 0.81
TRIM28-205ENST00000595028 ADRA2BP18089 450 aa20.1■□□□□ 0.81
TRIM28-205ENST00000595028 DNAJC5GQ8N7S2 189 aa20.1■□□□□ 0.81
TRIM28-205ENST00000595028 CRKLP46109 303 aaKnown RBP20.09■□□□□ 0.81
TRIM28-205ENST00000595028 DNAJC10Q8IXB1 793 aa20.09■□□□□ 0.81
TRIM28-205ENST00000595028 RPS6KA4O75676 772 aa20.08■□□□□ 0.81
TRIM28-205ENST00000595028 TTC5Q8N0Z6 440 aa20.08■□□□□ 0.81
TRIM28-205ENST00000595028 TRAPPC3LQ5T215 181 aa20.07■□□□□ 0.8
TRIM28-205ENST00000595028 WWC3Q9ULE0 1092 aa20.07■□□□□ 0.8
TRIM28-205ENST00000595028 NEFMP07197 916 aa20.06■□□□□ 0.8
TRIM28-205ENST00000595028 ZNF790Q6PG37 636 aa20.06■□□□□ 0.8
TRIM28-205ENST00000595028 VSIG10Q8N0Z9 540 aa20.06■□□□□ 0.8
TRIM28-205ENST00000595028 RTF1Q92541 710 aaKnown RBP20.06■□□□□ 0.8
TRIM28-205ENST00000595028 PLEKHF1Q96S99 279 aa20.06■□□□□ 0.8
TRIM28-205ENST00000595028 HTATSF1O43719 755 aaKnown RBP20.05■□□□□ 0.8
TRIM28-205ENST00000595028 ARHGEF1Q92888 912 aaKnown RBP20.05■□□□□ 0.8
TRIM28-205ENST00000595028 PRKRIP1Q9H875 184 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms