RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 LRRC4BQ9NT99 713 aa34.09■■■■□ 3.05
TRIM28-204ENST00000594806 NFE2L2Q16236 605 aa34.08■■■■□ 3.05
TRIM28-204ENST00000594806 CEMIPQ8WUJ3 1361 aa34.08■■■■□ 3.05
TRIM28-204ENST00000594806 TEFQ10587 303 aa34.06■■■■□ 3.04
TRIM28-204ENST00000594806 RUNDC1Q96C34 613 aa34.06■■■■□ 3.04
TRIM28-204ENST00000594806 STK32BQ9NY57 414 aa34.06■■■■□ 3.04
TRIM28-204ENST00000594806 PAPPAQ13219 1627 aa34.05■■■■□ 3.04
TRIM28-204ENST00000594806 DLG5Q8TDM6 1919 aa34.05■■■■□ 3.04
TRIM28-204ENST00000594806 MRS2Q9HD23 443 aa34.05■■■■□ 3.04
TRIM28-204ENST00000594806 LOC102724428A0A0B4J2F2 783 aa34.04■■■■□ 3.04
TRIM28-204ENST00000594806 SIK1P57059 783 aa34.04■■■■□ 3.04
TRIM28-204ENST00000594806 CCDC184Q52MB2 194 aa34.03■■■■□ 3.04
TRIM28-204ENST00000594806 R3HDM1Q15032 1099 aaKnown RBP34.02■■■■□ 3.04
TRIM28-204ENST00000594806 SLC15A2Q16348 729 aa34.02■■■■□ 3.04
TRIM28-204ENST00000594806 ZNF831Q5JPB2 1677 aa34.02■■■■□ 3.04
TRIM28-204ENST00000594806 ANO8Q9HCE9 1232 aaPredicted RBP34■■■■□ 3.03
TRIM28-204ENST00000594806 SIPA1L3O60292 1781 aaPredicted RBP34■■■■□ 3.03
TRIM28-204ENST00000594806 TAF1LQ8IZX4 1826 aa34■■■■□ 3.03
TRIM28-204ENST00000594806 PNISRQ8TF01 805 aaKnown RBP33.99■■■■□ 3.03
TRIM28-204ENST00000594806 TMPOP42166 694 aaKnown RBP33.98■■■■□ 3.03
TRIM28-204ENST00000594806 LMOD3Q0VAK6 560 aa33.98■■■■□ 3.03
TRIM28-204ENST00000594806 CCDC146Q8IYE0 955 aa33.98■■■■□ 3.03
TRIM28-204ENST00000594806 C5P01031 1676 aa33.98■■■■□ 3.03
TRIM28-204ENST00000594806 PSDA5PKW4 1024 aaPredicted RBP33.97■■■■□ 3.03
TRIM28-204ENST00000594806 ATP6V1AP38606 617 aa33.97■■■■□ 3.03
TRIM28-204ENST00000594806 KCNQ4P56696 695 aa33.97■■■■□ 3.03
TRIM28-204ENST00000594806 AKT1S1Q96B36 256 aa33.97■■■■□ 3.03
TRIM28-204ENST00000594806 RIPK4P57078 832 aa33.96■■■■□ 3.03
TRIM28-204ENST00000594806 MCM10Q7L590 875 aa33.96■■■■□ 3.03
TRIM28-204ENST00000594806 RBM42Q9BTD8 480 aaKnown RBP33.96■■■■□ 3.03
TRIM28-204ENST00000594806 TTC5Q8N0Z6 440 aa33.93■■■■□ 3.02
TRIM28-204ENST00000594806 QSER1Q2KHR3 1735 aa33.91■■■■□ 3.02
TRIM28-204ENST00000594806 PTCD1O75127 700 aaKnown RBP33.91■■■■□ 3.02
TRIM28-204ENST00000594806 SLC39A6Q13433 755 aa33.91■■■■□ 3.02
TRIM28-204ENST00000594806 DCTN1Q14203 1278 aa33.91■■■■□ 3.02
TRIM28-204ENST00000594806 ZNF827Q17R98 1081 aa33.91■■■■□ 3.02
TRIM28-204ENST00000594806 BTBD11A6QL63 1104 aa33.9■■■■□ 3.02
TRIM28-204ENST00000594806 TAF7Q15545 349 aaPredicted RBP33.9■■■■□ 3.02
TRIM28-204ENST00000594806 ZNF790Q6PG37 636 aa33.9■■■■□ 3.02
TRIM28-204ENST00000594806 CICQ96RK0 1608 aaPredicted RBP33.9■■■■□ 3.02
TRIM28-204ENST00000594806 ITPK1Q13572 414 aa33.89■■■■□ 3.02
TRIM28-204ENST00000594806 VSIG10Q8N0Z9 540 aa33.89■■■■□ 3.02
TRIM28-204ENST00000594806 SLC4A9Q96Q91 983 aa33.89■■■■□ 3.02
TRIM28-204ENST00000594806 UBR2Q8IWV8 1755 aa33.89■■■■□ 3.02
TRIM28-204ENST00000594806 C4BP0C0L5 1744 aa33.89■■■■□ 3.02
TRIM28-204ENST00000594806 TFCP2L1Q9NZI6 479 aa33.88■■■■□ 3.01
TRIM28-204ENST00000594806 DIEXFQ68CQ4 756 aaKnown RBP33.87■■■■□ 3.01
TRIM28-204ENST00000594806 KCPQ6ZWJ8 1503 aa33.86■■■■□ 3.01
TRIM28-204ENST00000594806 LINC00116Q8NCU8 138 aa33.86■■■■□ 3.01
TRIM28-204ENST00000594806 AK7Q96M32 723 aa33.85■■■■□ 3.01
TRIM28-204ENST00000594806 NEUROD2Q15784 382 aa33.84■■■■□ 3.01
TRIM28-204ENST00000594806 RC3H1Q5TC82 1133 aaKnown RBP33.84■■■■□ 3.01
TRIM28-204ENST00000594806 FLAD1Q8NFF5 587 aa33.84■■■■□ 3.01
TRIM28-204ENST00000594806 RRP7AQ9Y3A4 280 aaKnown RBP33.84■■■■□ 3.01
TRIM28-204ENST00000594806 COL5A3P25940 1745 aaPredicted RBP33.84■■■■□ 3.01
TRIM28-204ENST00000594806 CCER2I3L3R5 266 aa33.83■■■■□ 3.01
TRIM28-204ENST00000594806 APAF1O14727 1248 aa33.83■■■■□ 3.01
TRIM28-204ENST00000594806 CASZ1Q86V15 1759 aa33.83■■■■□ 3.01
TRIM28-204ENST00000594806 FMNL2Q96PY5 1086 aa33.82■■■■□ 3
TRIM28-204ENST00000594806 CNTNAP4Q9C0A0 1308 aa33.81■■■■□ 3
TRIM28-204ENST00000594806 TEX13AQ9BXU3 409 aaPredicted RBP33.81■■■■□ 3
TRIM28-204ENST00000594806 BABAM1Q9NWV8 329 aa33.81■■■■□ 3
TRIM28-204ENST00000594806 TUBGCP6Q96RT7 1819 aa33.81■■■■□ 3
TRIM28-204ENST00000594806 TJP1Q07157 1748 aa33.8■■■■□ 3
TRIM28-204ENST00000594806 ZNF496Q96IT1 587 aaPredicted RBP33.8■■■■□ 3
TRIM28-204ENST00000594806 TRIM35Q9UPQ4 493 aa33.8■■■■□ 3
TRIM28-204ENST00000594806 PNPLA7Q6ZV29 1317 aa33.79■■■■□ 3
TRIM28-204ENST00000594806 NCBP3Q53F19 620 aaKnown RBP33.79■■■■□ 3
TRIM28-204ENST00000594806 SLC16A10Q8TF71 515 aa33.79■■■■□ 3
TRIM28-204ENST00000594806 THUMPD2Q9BTF0 503 aaKnown RBP33.79■■■■□ 3
TRIM28-204ENST00000594806 HEG1Q9ULI3 1381 aa33.79■■■■□ 3
TRIM28-204ENST00000594806 UBR3Q6ZT12 1888 aa33.78■■■■□ 3
TRIM28-204ENST00000594806 SSFA2P28290 1259 aa33.76■■■□□ 2.99
TRIM28-204ENST00000594806 DNAJC10Q8IXB1 793 aa33.76■■■□□ 2.99
TRIM28-204ENST00000594806 KDM3BQ7LBC6 1761 aa33.75■■■□□ 2.99
TRIM28-204ENST00000594806 MYH14Q7Z406 1995 aaKnown RBP33.74■■■□□ 2.99
TRIM28-204ENST00000594806 GNPATO15228 680 aa33.74■■■□□ 2.99
TRIM28-204ENST00000594806 KCNQ3O43525 872 aa33.74■■■□□ 2.99
TRIM28-204ENST00000594806 FAM9BQ8IZU0 186 aa33.74■■■□□ 2.99
TRIM28-204ENST00000594806 RTCBQ9Y3I0 505 aaKnown RBP33.74■■■□□ 2.99
TRIM28-204ENST00000594806 RPS6KA4O75676 772 aa33.73■■■□□ 2.99
TRIM28-204ENST00000594806 STARD3NLO95772 234 aa33.73■■■□□ 2.99
TRIM28-204ENST00000594806 CRKLP46109 303 aaKnown RBP33.73■■■□□ 2.99
TRIM28-204ENST00000594806 CALD1Q05682 793 aaKnown RBP33.73■■■□□ 2.99
TRIM28-204ENST00000594806 PDGFDQ9GZP0 370 aaPredicted RBP33.73■■■□□ 2.99
TRIM28-204ENST00000594806 MTFR1LQ9H019 292 aa33.73■■■□□ 2.99
TRIM28-204ENST00000594806 LRP5O75197 1615 aa33.72■■■□□ 2.99
TRIM28-204ENST00000594806 CYP19A1P11511 503 aaPredicted RBP33.72■■■□□ 2.99
TRIM28-204ENST00000594806 ADRA2BP18089 450 aa33.72■■■□□ 2.99
TRIM28-204ENST00000594806 SPON1Q9HCB6 807 aa33.72■■■□□ 2.99
TRIM28-204ENST00000594806 SNRPA1P09661 255 aaKnown RBP33.71■■■□□ 2.99
TRIM28-204ENST00000594806 CCDC27Q2M243 656 aa33.71■■■□□ 2.99
TRIM28-204ENST00000594806 COL23A1Q86Y22 540 aaPredicted RBP33.71■■■□□ 2.99
TRIM28-204ENST00000594806 MIS18AQ9NYP9 233 aa33.71■■■□□ 2.99
TRIM28-204ENST00000594806 CCDC87Q9NVE4 849 aa33.7■■■□□ 2.99
TRIM28-204ENST00000594806 TSPYL4Q9UJ04 414 aa33.7■■■□□ 2.99
TRIM28-204ENST00000594806 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.69■■■□□ 2.98
TRIM28-204ENST00000594806 NGEFQ8N5V2 710 aa33.69■■■□□ 2.98
TRIM28-204ENST00000594806 TRAPPC3LQ5T215 181 aa33.67■■■□□ 2.98
TRIM28-204ENST00000594806 INTS5Q6P9B9 1019 aaKnown RBP33.67■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms