RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CTAGE5	O15320	804 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	MAP3K11	Q16584	847 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC112	Q8NEF3	446 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	NGDN	Q8NEJ9	315 aa	Known RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	ZNF396	Q96N95	335 aa	Predicted RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	USP26	Q9BXU7	913 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	DDX19A	Q9NUU7	478 aa	Known RBP	4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	CFAP45	Q9UL16	551 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	LIMCH1	Q9UPQ0	1083 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	PAXBP1	Q9Y5B6	917 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC61	Q9Y6R9	512 aa		4.21	□□□□□ -1.74
VMP1-216	ENST00000592790	FYB1	O15117	783 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	VAMP4	O75379	141 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TPM1	P09493	284 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	NEXN	Q0ZGT2	675 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.2	□□□□□ -1.74	1e-22	■■■□□ 16.8
VMP1-216	ENST00000592790	SF3A1	Q15459	793 aa	Known RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	NUTM2D	Q5VT03	806 aa	Predicted RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	LMOD2	Q6P5Q4	547 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	KIF1BP	Q96EK5	621 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TSPYL1	Q9H0U9	437 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	NUP62CL	Q9H1M0	184 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790		A0A1W2PP64	1363 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	ABCC4	O15439	1325 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	GLRX3	O76003	335 aa	Known RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	GNL2	Q13823	731 aa	Known RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	GOLGA6L1	Q8N7Z2	621 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC94	Q9BW85	323 aa	Predicted RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TRIM5	Q9C035	493 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TNMD	Q9H2S6	317 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	MBIP	Q9NS73	344 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	C9orf78	Q9NZ63	289 aa	Predicted RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	USP25	Q9UHP3	1055 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	KIAA0232	Q92628	1395 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	SDS	P20132	328 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TEF	Q10587	303 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	TPD52L1	Q16890	204 aa	Predicted RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	CPLX2	Q6PUV4	134 aa	Known RBP	4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	PLEKHM2	Q8IWE5	1019 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	BABAM1	Q9NWV8	329 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	LMTK2	Q8IWU2	1503 aa		4.2	□□□□□ -1.74
VMP1-216	ENST00000592790	SURF6	O75683	361 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	CREBRF	Q8IUR6	639 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	TMX3	Q96JJ7	454 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	FEZ1	Q99689	392 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ACBD3	Q9H3P7	528 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	CWC15	Q9P013	229 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	TRIM35	Q9UPQ4	493 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PTCH1	Q13635	1447 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	EDC4	Q6P2E9	1401 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	KIN	O60870	393 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	XPC	Q01831	940 aa	Predicted RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	SULT6B1	Q6IMI4	303 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	GPBP1L1	Q9HC44	474 aa	Predicted RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	SLC24A3	Q9HC58	644 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PDRG1	Q9NUG6	133 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	IQSEC2	Q5JU85	1478 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	QRICH2	Q9H0J4	1663 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	FAM135B	Q49AJ0	1406 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ZCCHC11	Q5TAX3	1644 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ABCA6	Q8N139	1617 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC171	Q6TFL3	1326 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ATP7B	P35670	1465 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	FIBP	O43427	364 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	DHX16	O60231	1041 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ZSCAN22	P10073	491 aa	Predicted RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PDE1A	P54750	535 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	ESYT1	Q9BSJ8	1104 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	LMBRD1	Q9NUN5	540 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	NAP1L2	Q9ULW6	460 aa	Predicted RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	MYO3A	Q8NEV4	1616 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	STX6	O43752	255 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	TNNT3	P45378	269 aa	Predicted RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PRIM1	P49642	420 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	FAM193A	P78312	1265 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	NOM1	Q5C9Z4	860 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	C1orf141	Q5JVX7	400 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	LARP1B	Q659C4	914 aa	Known RBP	4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PPIP5K1	Q6PFW1	1433 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	RIMS2	Q9UQ26	1411 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	NCOA3	Q9Y6Q9	1424 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	PIK3R4	Q99570	1358 aa		4.19	□□□□□ -1.74
VMP1-216	ENST00000592790	NPAT	Q14207	1427 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	YTHDC2	Q9H6S0	1430 aa	Known RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	WASL	O00401	505 aa	Predicted RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	CBFA2T2	O43439	604 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	KIF20A	O95235	890 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	GSDMD	P57764	484 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	MYRIP	Q8NFW9	859 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	IPO4	Q8TEX9	1081 aa	Known RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	HMG20B	Q9P0W2	317 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790		U3KPZ7	1027 aa	Predicted RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	ADGRB3	O60242	1522 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	ADCY5	O95622	1261 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	CEP85	Q6P2H3	762 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	BLOC1S2	Q6QNY1	142 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	CEP57L1	Q8IYX8	460 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	MNS1	Q8NEH6	495 aa		4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms