RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-223ENST00000591239 FCHSD2O94868 740 aa12.28□□□□□ -0.44
DNMT1-223ENST00000591239 HMGB2P26583 209 aaKnown RBP12.28□□□□□ -0.44
DNMT1-223ENST00000591239 MAPK8IP2Q13387 824 aaPredicted RBP12.28□□□□□ -0.44
DNMT1-223ENST00000591239 PHACTR3Q96KR7 559 aa12.28□□□□□ -0.44
DNMT1-223ENST00000591239 SPON1Q9HCB6 807 aa12.28□□□□□ -0.44
DNMT1-223ENST00000591239 ZNF316A6NFI3 1004 aaPredicted RBP12.27□□□□□ -0.45
DNMT1-223ENST00000591239 ZBTB7AO95365 584 aa12.27□□□□□ -0.45
DNMT1-223ENST00000591239 GAS2L2Q8NHY3 880 aa12.27□□□□□ -0.45
DNMT1-223ENST00000591239 CASZ1Q86V15 1759 aa12.27□□□□□ -0.45
DNMT1-223ENST00000591239 SCN11AQ9UI33 1791 aa12.26□□□□□ -0.45
DNMT1-223ENST00000591239 ATP6V1AP38606 617 aa12.26□□□□□ -0.45
DNMT1-223ENST00000591239 SLC52A2Q9HAB3 445 aa12.26□□□□□ -0.45
DNMT1-223ENST00000591239 PNPLA7Q6ZV29 1317 aa12.26□□□□□ -0.45
DNMT1-223ENST00000591239 MYBBP1AQ9BQG0 1328 aaKnown RBP12.26□□□□□ -0.45
DNMT1-223ENST00000591239 C5P01031 1676 aa12.26□□□□□ -0.45
DNMT1-223ENST00000591239 GNAT3A8MTJ3 354 aa12.25□□□□□ -0.45
DNMT1-223ENST00000591239 ITPK1Q13572 414 aa12.25□□□□□ -0.45
DNMT1-223ENST00000591239 RBM42Q9BTD8 480 aaKnown RBP12.25□□□□□ -0.45
DNMT1-223ENST00000591239 MTFR1LQ9H019 292 aa12.25□□□□□ -0.45
DNMT1-223ENST00000591239 ATF5Q9Y2D1 282 aaPredicted RBP12.25□□□□□ -0.45
DNMT1-223ENST00000591239 MAP3K5Q99683 1374 aa12.25□□□□□ -0.45
DNMT1-223ENST00000591239 TAF1LQ8IZX4 1826 aa12.25□□□□□ -0.45
DNMT1-223ENST00000591239 PTCD1O75127 700 aaKnown RBP12.24□□□□□ -0.45
DNMT1-223ENST00000591239 LINC00116Q8NCU8 138 aa12.24□□□□□ -0.45
DNMT1-223ENST00000591239 IL17REQ8NFR9 667 aa12.24□□□□□ -0.45
DNMT1-223ENST00000591239 SLC4A9Q96Q91 983 aa12.24□□□□□ -0.45
DNMT1-223ENST00000591239 PRKRIP1Q9H875 184 aaPredicted RBP12.24□□□□□ -0.45
DNMT1-223ENST00000591239 QSER1Q2KHR3 1735 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 ADAMTS7Q9UKP4 1686 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 MRC1P22897 1456 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 PTGER2P43116 358 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 SLC16A10Q8TF71 515 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 AK7Q96M32 723 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 TUBGCP6Q96RT7 1819 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 C4BP0C0L5 1744 aa12.23□□□□□ -0.45
DNMT1-223ENST00000591239 NEFMP07197 916 aa12.22□□□□□ -0.45
DNMT1-223ENST00000591239 TEFQ10587 303 aa12.22□□□□□ -0.45
DNMT1-223ENST00000591239 SLC39A6Q13433 755 aa12.22□□□□□ -0.45
DNMT1-223ENST00000591239 COL23A1Q86Y22 540 aaPredicted RBP12.22□□□□□ -0.45
DNMT1-223ENST00000591239 PLEKHF1Q96S99 279 aa12.22□□□□□ -0.45
DNMT1-223ENST00000591239 PPP1R1BQ9UD71 204 aaPredicted RBP12.22□□□□□ -0.45
DNMT1-223ENST00000591239 VIRMAQ69YN4 1812 aaKnown RBP12.22□□□□□ -0.45
DNMT1-223ENST00000591239 AMIGO3Q86WK7 504 aa12.21□□□□□ -0.45
DNMT1-223ENST00000591239 FLAD1Q8NFF5 587 aa12.21□□□□□ -0.45
DNMT1-223ENST00000591239 PNNQ9H307 717 aaKnown RBP12.21□□□□□ -0.45
DNMT1-223ENST00000591239 RNF216Q9NWF9 866 aaPredicted RBP12.21□□□□□ -0.45
DNMT1-223ENST00000591239 CEMIPQ8WUJ3 1361 aa12.2□□□□□ -0.46
DNMT1-223ENST00000591239 ZNF831Q5JPB2 1677 aa12.2□□□□□ -0.46
DNMT1-223ENST00000591239 GNPATO15228 680 aa12.2□□□□□ -0.46
DNMT1-223ENST00000591239 SMIM5Q71RC9 77 aa12.2□□□□□ -0.46
DNMT1-223ENST00000591239 RTF1Q92541 710 aaKnown RBP12.2□□□□□ -0.46
DNMT1-223ENST00000591239 SGIP1Q9BQI5 828 aa12.2□□□□□ -0.46
DNMT1-223ENST00000591239 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.19□□□□□ -0.46
DNMT1-223ENST00000591239 HTATSF1O43719 755 aaKnown RBP12.19□□□□□ -0.46
DNMT1-223ENST00000591239 PHF14O94880 888 aa12.19□□□□□ -0.46
DNMT1-223ENST00000591239 SSFA2P28290 1259 aa12.19□□□□□ -0.46
DNMT1-223ENST00000591239 RC3H1Q5TC82 1133 aaKnown RBP12.19□□□□□ -0.46
DNMT1-223ENST00000591239 MCM10Q7L590 875 aa12.19□□□□□ -0.46
DNMT1-223ENST00000591239 CNTNAP4Q9C0A0 1308 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 DCTN1Q14203 1278 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 NFE2L2Q16236 605 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 ZNF790Q6PG37 636 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 TTC5Q8N0Z6 440 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 RTCBQ9Y3I0 505 aaKnown RBP12.18□□□□□ -0.46
DNMT1-223ENST00000591239 UBR3Q6ZT12 1888 aa12.18□□□□□ -0.46
DNMT1-223ENST00000591239 MAPK8IP3Q9UPT6 1336 aa12.17□□□□□ -0.46
DNMT1-223ENST00000591239 BTBD11A6QL63 1104 aa12.17□□□□□ -0.46
DNMT1-223ENST00000591239 POLD1P28340 1107 aa12.17□□□□□ -0.46
DNMT1-223ENST00000591239 CRKLP46109 303 aaKnown RBP12.17□□□□□ -0.46
DNMT1-223ENST00000591239 WDR43Q15061 677 aaKnown RBP eCLIP12.17□□□□□ -0.46
DNMT1-223ENST00000591239 ARXQ96QS3 562 aa12.17□□□□□ -0.46
DNMT1-223ENST00000591239 GOLGB1Q14789 3259 aaKnown RBP12.17□□□□□ -0.46
DNMT1-223ENST00000591239 COL5A3P25940 1745 aaPredicted RBP12.17□□□□□ -0.46
DNMT1-223ENST00000591239 KCPQ6ZWJ8 1503 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 SIPA1L3O60292 1781 aaPredicted RBP12.16□□□□□ -0.46
DNMT1-223ENST00000591239 RPS6KA4O75676 772 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 TRAPPC3LQ5T215 181 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 MSL1Q68DK7 614 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 DNAJC10Q8IXB1 793 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 VSIG10Q8N0Z9 540 aa12.16□□□□□ -0.46
DNMT1-223ENST00000591239 TJP1Q07157 1748 aa12.15□□□□□ -0.46
DNMT1-223ENST00000591239 CYP19A1P11511 503 aaPredicted RBP12.15□□□□□ -0.46
DNMT1-223ENST00000591239 INTS5Q6P9B9 1019 aaKnown RBP12.15□□□□□ -0.46
DNMT1-223ENST00000591239 ZNF496Q96IT1 587 aaPredicted RBP12.15□□□□□ -0.46
DNMT1-223ENST00000591239 ADAMTS8Q9UP79 889 aa12.15□□□□□ -0.46
DNMT1-223ENST00000591239 MYH14Q7Z406 1995 aaKnown RBP12.15□□□□□ -0.46
DNMT1-223ENST00000591239 UTRNP46939 3433 aa12.15□□□□□ -0.46
DNMT1-223ENST00000591239 CICQ96RK0 1608 aaPredicted RBP12.15□□□□□ -0.47
DNMT1-223ENST00000591239 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 KCNQ3O43525 872 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 TAF7Q15545 349 aaPredicted RBP12.14□□□□□ -0.47
DNMT1-223ENST00000591239 CCDC146Q8IYE0 955 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 ARHGEF1Q92888 912 aaKnown RBP12.14□□□□□ -0.47
DNMT1-223ENST00000591239 FMNL2Q96PY5 1086 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 FHDC1Q9C0D6 1143 aaPredicted RBP12.14□□□□□ -0.47
DNMT1-223ENST00000591239 CCDC87Q9NVE4 849 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 UBR2Q8IWV8 1755 aa12.14□□□□□ -0.47
DNMT1-223ENST00000591239 DLG5Q8TDM6 1919 aa12.13□□□□□ -0.47
DNMT1-223ENST00000591239 ANP32CO43423 234 aa12.13□□□□□ -0.47
DNMT1-223ENST00000591239 RFC4P35249 363 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms