RNA–Protein interactions for RNA: ENST00000590704.5

CIRBP-229, Transcript of cold inducible RNA binding protein, human

TSL 2

Gene CIRBP, Length 1,456 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-229	ENST00000590704	TMOD3	Q9NYL9	352 aa		27.92	■■■□□ 2.06
CIRBP-229	ENST00000590704	HTATSF1	O43719	755 aa	Known RBP	27.91	■■■□□ 2.06
CIRBP-229	ENST00000590704	MCM10	Q7L590	875 aa		27.91	■■■□□ 2.06
CIRBP-229	ENST00000590704	CABP4	P57796	275 aa		27.9	■■■□□ 2.06
CIRBP-229	ENST00000590704	CCER2	I3L3R5	266 aa		27.89	■■■□□ 2.06
CIRBP-229	ENST00000590704	KCNQ4	P56696	695 aa		27.89	■■■□□ 2.06
CIRBP-229	ENST00000590704	SLC4A9	Q96Q91	983 aa		27.89	■■■□□ 2.06
CIRBP-229	ENST00000590704	SIPA1L3	O60292	1781 aa	Predicted RBP	27.89	■■■□□ 2.06
CIRBP-229	ENST00000590704	TRIM35	Q9UPQ4	493 aa		27.89	■■■□□ 2.05
CIRBP-229	ENST00000590704	RRP7A	Q9Y3A4	280 aa	Known RBP	27.89	■■■□□ 2.05
CIRBP-229	ENST00000590704	NUP188	Q5SRE5	1749 aa		27.88	■■■□□ 2.05
CIRBP-229	ENST00000590704	MAPK8IP3	Q9UPT6	1336 aa		27.87	■■■□□ 2.05
CIRBP-229	ENST00000590704	RIPK4	P57078	832 aa		27.87	■■■□□ 2.05
CIRBP-229	ENST00000590704	PALLD	Q8WX93	1383 aa		27.86	■■■□□ 2.05
CIRBP-229	ENST00000590704	APAF1	O14727	1248 aa		27.86	■■■□□ 2.05
CIRBP-229	ENST00000590704	THUMPD2	Q9BTF0	503 aa	Known RBP	27.86	■■■□□ 2.05
CIRBP-229	ENST00000590704	SLC39A6	Q13433	755 aa		27.84	■■■□□ 2.05
CIRBP-229	ENST00000590704	PAPPA	Q13219	1627 aa		27.83	■■■□□ 2.05
CIRBP-229	ENST00000590704	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.83	■■■□□ 2.04
CIRBP-229	ENST00000590704	KCNQ3	O43525	872 aa		27.82	■■■□□ 2.04
CIRBP-229	ENST00000590704	NEFM	P07197	916 aa		27.82	■■■□□ 2.04
CIRBP-229	ENST00000590704	FAM9B	Q8IZU0	186 aa		27.82	■■■□□ 2.04
CIRBP-229	ENST00000590704	SMARCC1	Q92922	1105 aa	Predicted RBP	27.82	■■■□□ 2.04
CIRBP-229	ENST00000590704	RTF1	Q92541	710 aa	Known RBP	27.81	■■■□□ 2.04
CIRBP-229	ENST00000590704	SENP3-EIF4A1	A0A087X0R7	540 aa		27.8	■■■□□ 2.04
CIRBP-229	ENST00000590704	LOC102724428	A0A0B4J2F2	783 aa		27.8	■■■□□ 2.04
CIRBP-229	ENST00000590704	SIK1	P57059	783 aa		27.8	■■■□□ 2.04
CIRBP-229	ENST00000590704	NEUROD2	Q15784	382 aa		27.8	■■■□□ 2.04
CIRBP-229	ENST00000590704	SLC27A3	Q5K4L6	730 aa		27.8	■■■□□ 2.04
CIRBP-229	ENST00000590704	ITPK1	Q13572	414 aa		27.79	■■■□□ 2.04
CIRBP-229	ENST00000590704	TEF	Q10587	303 aa		27.78	■■■□□ 2.04
CIRBP-229	ENST00000590704	KCP	Q6ZWJ8	1503 aa		27.78	■■■□□ 2.04
CIRBP-229	ENST00000590704	CCNL1	Q9UK58	526 aa	Predicted RBP	27.77	■■■□□ 2.04
CIRBP-229	ENST00000590704	TAF1L	Q8IZX4	1826 aa		27.76	■■■□□ 2.03
CIRBP-229	ENST00000590704	TAF7	Q15545	349 aa	Predicted RBP	27.76	■■■□□ 2.03
CIRBP-229	ENST00000590704	ZNF790	Q6PG37	636 aa		27.76	■■■□□ 2.03
CIRBP-229	ENST00000590704	AKT1S1	Q96B36	256 aa		27.76	■■■□□ 2.03
CIRBP-229	ENST00000590704	UBR2	Q8IWV8	1755 aa		27.75	■■■□□ 2.03
CIRBP-229	ENST00000590704	ZNF827	Q17R98	1081 aa		27.75	■■■□□ 2.03
CIRBP-229	ENST00000590704	MIS18A	Q9NYP9	233 aa		27.75	■■■□□ 2.03
CIRBP-229	ENST00000590704	ZNF831	Q5JPB2	1677 aa		27.75	■■■□□ 2.03
CIRBP-229	ENST00000590704	PTCD1	O75127	700 aa	Known RBP	27.74	■■■□□ 2.03
CIRBP-229	ENST00000590704	LINC00116	Q8NCU8	138 aa		27.73	■■■□□ 2.03
CIRBP-229	ENST00000590704	BTBD11	A6QL63	1104 aa		27.72	■■■□□ 2.03
CIRBP-229	ENST00000590704	ZNF496	Q96IT1	587 aa	Predicted RBP	27.72	■■■□□ 2.03
CIRBP-229	ENST00000590704	AMIGO3	Q86WK7	504 aa		27.71	■■■□□ 2.03
CIRBP-229	ENST00000590704	RBM42	Q9BTD8	480 aa	Known RBP	27.71	■■■□□ 2.03
CIRBP-229	ENST00000590704	ATP6V1A	P38606	617 aa		27.7	■■■□□ 2.03
CIRBP-229	ENST00000590704	NCBP3	Q53F19	620 aa	Known RBP	27.7	■■■□□ 2.03
CIRBP-229	ENST00000590704	SLC15A2	Q16348	729 aa		27.7	■■■□□ 2.02
CIRBP-229	ENST00000590704	CIC	Q96RK0	1608 aa	Predicted RBP	27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	TJP1	Q07157	1748 aa		27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	C5	P01031	1676 aa		27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	LMOD3	Q0VAK6	560 aa		27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	CCDC27	Q2M243	656 aa		27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	PDGFD	Q9GZP0	370 aa	Predicted RBP	27.69	■■■□□ 2.02
CIRBP-229	ENST00000590704	MYH14	Q7Z406	1995 aa	Known RBP	27.68	■■■□□ 2.02
CIRBP-229	ENST00000590704	R3HDM1	Q15032	1099 aa	Known RBP	27.68	■■■□□ 2.02
CIRBP-229	ENST00000590704	HEG1	Q9ULI3	1381 aa		27.68	■■■□□ 2.02
CIRBP-229	ENST00000590704	KDM3B	Q7LBC6	1761 aa		27.67	■■■□□ 2.02
CIRBP-229	ENST00000590704	CHL1	O00533	1208 aa		27.67	■■■□□ 2.02
CIRBP-229	ENST00000590704	ZNF853	P0CG23	659 aa		27.67	■■■□□ 2.02
CIRBP-229	ENST00000590704	COL5A3	P25940	1745 aa	Predicted RBP	27.66	■■■□□ 2.02
CIRBP-229	ENST00000590704	PSD	A5PKW4	1024 aa	Predicted RBP	27.66	■■■□□ 2.02
CIRBP-229	ENST00000590704	WWC1	Q8IX03	1113 aa		27.66	■■■□□ 2.02
CIRBP-229	ENST00000590704	DNAJC10	Q8IXB1	793 aa		27.66	■■■□□ 2.02
CIRBP-229	ENST00000590704	SMIM5	Q71RC9	77 aa		27.65	■■■□□ 2.02
CIRBP-229	ENST00000590704	VSIG10	Q8N0Z9	540 aa		27.65	■■■□□ 2.02
CIRBP-229	ENST00000590704	TUBGCP6	Q96RT7	1819 aa		27.65	■■■□□ 2.02
CIRBP-229	ENST00000590704	C4B	P0C0L5	1744 aa		27.65	■■■□□ 2.02
CIRBP-229	ENST00000590704	PRAMEF22	A3QJZ6	481 aa		27.64	■■■□□ 2.02
CIRBP-229	ENST00000590704	EIF4A1	P60842	406 aa	Known RBP	27.64	■■■□□ 2.01
CIRBP-229	ENST00000590704	NBPF14	Q5TI25	921 aa		27.64	■■■□□ 2.01
CIRBP-229	ENST00000590704	CYP19A1	P11511	503 aa	Predicted RBP	27.62	■■■□□ 2.01
CIRBP-229	ENST00000590704	INTS5	Q6P9B9	1019 aa	Known RBP	27.62	■■■□□ 2.01
CIRBP-229	ENST00000590704	BABAM1	Q9NWV8	329 aa		27.62	■■■□□ 2.01
CIRBP-229	ENST00000590704	TTC5	Q8N0Z6	440 aa		27.61	■■■□□ 2.01
CIRBP-229	ENST00000590704	STK32B	Q9NY57	414 aa		27.61	■■■□□ 2.01
CIRBP-229	ENST00000590704	SALL2	Q9Y467	1007 aa	Predicted RBP	27.61	■■■□□ 2.01
CIRBP-229	ENST00000590704	PNPLA7	Q6ZV29	1317 aa		27.61	■■■□□ 2.01
CIRBP-229	ENST00000590704	ZNF521	Q96K83	1311 aa		27.61	■■■□□ 2.01
CIRBP-229	ENST00000590704	RC3H1	Q5TC82	1133 aa	Known RBP	27.6	■■■□□ 2.01
CIRBP-229	ENST00000590704	CFAP44	Q96MT7	982 aa		27.6	■■■□□ 2.01
CIRBP-229	ENST00000590704	FMNL2	Q96PY5	1086 aa		27.6	■■■□□ 2.01
CIRBP-229	ENST00000590704	USP16	Q9Y5T5	823 aa		27.6	■■■□□ 2.01
CIRBP-229	ENST00000590704	SRCAP	Q6ZRS2	3230 aa		27.6	■■■□□ 2.01
CIRBP-229	ENST00000590704	UBR3	Q6ZT12	1888 aa		27.59	■■■□□ 2.01
CIRBP-229	ENST00000590704	TSPYL4	Q9UJ04	414 aa		27.58	■■■□□ 2.01
CIRBP-229	ENST00000590704	CNTNAP4	Q9C0A0	1308 aa		27.58	■■■□□ 2.01
CIRBP-229	ENST00000590704	CRKL	P46109	303 aa	Known RBP	27.57	■■■□□ 2
CIRBP-229	ENST00000590704	SPINK5	Q9NQ38	1064 aa	Predicted RBP	27.57	■■■□□ 2
CIRBP-229	ENST00000590704	QSER1	Q2KHR3	1735 aa		27.57	■■■□□ 2
CIRBP-229	ENST00000590704	CASZ1	Q86V15	1759 aa		27.57	■■■□□ 2
CIRBP-229	ENST00000590704	GIGYF1	O75420	1035 aa	Predicted RBP	27.57	■■■□□ 2
CIRBP-229	ENST00000590704	KRT24	Q2M2I5	525 aa		27.57	■■■□□ 2
CIRBP-229	ENST00000590704	COL23A1	Q86Y22	540 aa	Predicted RBP	27.56	■■■□□ 2
CIRBP-229	ENST00000590704	MBIP	Q9NS73	344 aa		27.56	■■■□□ 2
CIRBP-229	ENST00000590704	IFT57	Q9NWB7	429 aa		27.55	■■■□□ 2
CIRBP-229	ENST00000590704	TFCP2L1	Q9NZI6	479 aa		27.54	■■■□□ 2
CIRBP-229	ENST00000590704	RPS6KA4	O75676	772 aa		27.53	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms