RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.77□□□□□ -0.69
CCDC47-205ENST00000582331 GABBR2O75899 941 aa10.77□□□□□ -0.69
CCDC47-205ENST00000582331 NEUROD1Q13562 356 aa10.77□□□□□ -0.69
CCDC47-205ENST00000582331 AMIGO3Q86WK7 504 aa10.77□□□□□ -0.69
CCDC47-205ENST00000582331 USHBP1Q8N6Y0 703 aa10.77□□□□□ -0.69
CCDC47-205ENST00000582331 PUS7Q96PZ0 661 aaKnown RBP10.77□□□□□ -0.69
CCDC47-205ENST00000582331 RGPD2P0DJD1 1756 aa10.77□□□□□ -0.69
CCDC47-205ENST00000582331 NSD3Q9BZ95 1437 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 SSFA2P28290 1259 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 SMIM5Q71RC9 77 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 CARD11Q9BXL7 1154 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 PCDH11XQ9BZA7 1347 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 PCDH11YQ9BZA8 1340 aa10.76□□□□□ -0.69
CCDC47-205ENST00000582331 C4BP0C0L5 1744 aa10.75□□□□□ -0.69
CCDC47-205ENST00000582331 TAF1LQ8IZX4 1826 aa10.75□□□□□ -0.69
CCDC47-205ENST00000582331 MNX1P50219 401 aaPredicted RBP10.75□□□□□ -0.69
CCDC47-205ENST00000582331 RRS1Q15050 365 aaKnown RBP10.74□□□□□ -0.69
CCDC47-205ENST00000582331 COL13A1Q5TAT6 717 aaPredicted RBP10.74□□□□□ -0.69
CCDC47-205ENST00000582331 ARHGAP27Q6ZUM4 889 aa10.74□□□□□ -0.69
CCDC47-205ENST00000582331 NMRK2Q9NPI5 230 aa10.74□□□□□ -0.69
CCDC47-205ENST00000582331 BCS1LQ9Y276 419 aa10.74□□□□□ -0.69
CCDC47-205ENST00000582331 RTL1A6NKG5 1358 aa10.74□□□□□ -0.69
CCDC47-205ENST00000582331 SMG6Q86US8 1419 aaKnown RBP10.74□□□□□ -0.69
CCDC47-205ENST00000582331 CYP27B1O15528 508 aa10.73□□□□□ -0.69
CCDC47-205ENST00000582331 MMP10P09238 476 aa10.73□□□□□ -0.69
CCDC47-205ENST00000582331 TGFB2P61812 414 aa10.73□□□□□ -0.69
CCDC47-205ENST00000582331 C16orf71Q8IYS4 520 aaPredicted RBP10.73□□□□□ -0.69
CCDC47-205ENST00000582331 RBM46Q8TBY0 533 aaKnown RBP10.73□□□□□ -0.69
CCDC47-205ENST00000582331 PIGBQ92521 554 aa10.73□□□□□ -0.69
CCDC47-205ENST00000582331 KLRG1Q96E93 195 aa10.73□□□□□ -0.69
CCDC47-205ENST00000582331 CICQ96RK0 1608 aaPredicted RBP10.73□□□□□ -0.69
CCDC47-205ENST00000582331 LOC102724428A0A0B4J2F2 783 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 A0A0G2JLW4 131 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 SIK1P57059 783 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 JMYQ8N9B5 988 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 LINC00116Q8NCU8 138 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 TOGARAM1Q9Y4F4 1720 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 UBR3Q6ZT12 1888 aa10.72□□□□□ -0.69
CCDC47-205ENST00000582331 PXDNLA1KZ92 1463 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 GNPATO15228 680 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 HTRA3P83110 453 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 FSTL1Q12841 308 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 HSP90AB2PQ58FF8 381 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 TNS4Q8IZW8 715 aa10.71□□□□□ -0.69
CCDC47-205ENST00000582331 ZNF579Q8NAF0 562 aaKnown RBP10.71□□□□□ -0.69
CCDC47-205ENST00000582331 WDR90Q96KV7 1748 aa10.7□□□□□ -0.7
CCDC47-205ENST00000582331 INSRP06213 1382 aa10.7□□□□□ -0.7
CCDC47-205ENST00000582331 FCHSD2O94868 740 aa10.7□□□□□ -0.7
CCDC47-205ENST00000582331 NKX1-1Q15270 411 aaPredicted RBP10.7□□□□□ -0.7
CCDC47-205ENST00000582331 NLGN1Q8N2Q7 840 aa10.7□□□□□ -0.7
CCDC47-205ENST00000582331 ITGB4P16144 1822 aa10.7□□□□□ -0.7
CCDC47-205ENST00000582331 FYB1O15117 783 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 DPEP1P16444 411 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 ATP6V1AP38606 617 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 PRELPP51888 382 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 TMF1P82094 1093 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 ITPK1Q13572 414 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 TRAPPC3LQ5T215 181 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 C9orf131Q5VYM1 1079 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 MIER1Q8N108 512 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 GGNBP2Q9H3C7 697 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 CCDC87Q9NVE4 849 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 TMOD3Q9NYL9 352 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
CCDC47-205ENST00000582331 KDM2BQ8NHM5 1336 aa10.68□□□□□ -0.7
CCDC47-205ENST00000582331 SLC24A1O60721 1099 aa10.68□□□□□ -0.7
CCDC47-205ENST00000582331 ASAP1Q9ULH1 1129 aa10.68□□□□□ -0.7
CCDC47-205ENST00000582331 RTCBQ9Y3I0 505 aaKnown RBP10.68□□□□□ -0.7
CCDC47-205ENST00000582331 N4BP2Q86UW6 1770 aaPredicted RBP10.67□□□□□ -0.7
CCDC47-205ENST00000582331 PLEKHG2Q9H7P9 1386 aa10.67□□□□□ -0.7
CCDC47-205ENST00000582331 RRAGCQ9HB90 399 aa10.67□□□□□ -0.7
CCDC47-205ENST00000582331 MAP2P11137 1827 aaKnown RBP10.67□□□□□ -0.7
CCDC47-205ENST00000582331 KIF13BQ9NQT8 1826 aa10.67□□□□□ -0.7
CCDC47-205ENST00000582331 FLT4P35916 1363 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 KIF24Q5T7B8 1368 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 TESK2Q96S53 571 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 ATG3Q9NT62 314 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 PARP3Q9Y6F1 533 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 KIAA1551Q9HCM1 1747 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 C10orf71Q711Q0 1435 aa10.66□□□□□ -0.7
CCDC47-205ENST00000582331 ST20-MTHFSA0A0A6YYL1 179 aa10.65□□□□□ -0.7
CCDC47-205ENST00000582331 KCNA3P22001 575 aa10.65□□□□□ -0.7
CCDC47-205ENST00000582331 RFC4P35249 363 aa10.65□□□□□ -0.7
CCDC47-205ENST00000582331 ARHGEF1Q92888 912 aaKnown RBP10.65□□□□□ -0.7
CCDC47-205ENST00000582331 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.65□□□□□ -0.71e-8■■□□□ 14
CCDC47-205ENST00000582331 PIM2Q9P1W9 311 aa10.65□□□□□ -0.7
CCDC47-205ENST00000582331 PKD1L3Q7Z443 1732 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 KCPQ6ZWJ8 1503 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 GYS1P13807 737 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 DALRD3Q5D0E6 543 aaKnown RBP10.64□□□□□ -0.71
CCDC47-205ENST00000582331 RC3H1Q5TC82 1133 aaKnown RBP10.64□□□□□ -0.71
CCDC47-205ENST00000582331 IFNL2Q8IZJ0 200 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 SMC1BQ8NDV3 1235 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 DCAF5Q96JK2 942 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 RNF181Q9P0P0 153 aa10.64□□□□□ -0.71
CCDC47-205ENST00000582331 RPS6KA4O75676 772 aa10.63□□□□□ -0.71
CCDC47-205ENST00000582331 PHKG2P15735 406 aa10.63□□□□□ -0.71
CCDC47-205ENST00000582331 PLCD3Q8N3E9 789 aa10.63□□□□□ -0.71
CCDC47-205ENST00000582331 PCNTO95613 3336 aa10.63□□□□□ -0.71
CCDC47-205ENST00000582331 C4AP0C0L4 1744 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms