RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 GNPATO15228 680 aa15.09■□□□□ 0.01
TOP3A-210ENST00000580713 FCHSD2O94868 740 aa15.08■□□□□ 0
TOP3A-210ENST00000580713 TGFB2P61812 414 aa15.08■□□□□ 0
TOP3A-210ENST00000580713 LINC00116Q8NCU8 138 aa15.08■□□□□ 0
TOP3A-210ENST00000580713 PIGBQ92521 554 aa15.08■□□□□ 0
TOP3A-210ENST00000580713 RTL1A6NKG5 1358 aa15.08■□□□□ 0
TOP3A-210ENST00000580713 LOC102724428A0A0B4J2F2 783 aa15.07■□□□□ 0
TOP3A-210ENST00000580713 CYP27B1O15528 508 aa15.07■□□□□ 0
TOP3A-210ENST00000580713 PRELPP51888 382 aa15.07■□□□□ 0
TOP3A-210ENST00000580713 SIK1P57059 783 aa15.07■□□□□ 0
TOP3A-210ENST00000580713 JMYQ8N9B5 988 aa15.07■□□□□ 0
TOP3A-210ENST00000580713 CICQ96RK0 1608 aaPredicted RBP15.06■□□□□ 0
TOP3A-210ENST00000580713 FSTL1Q12841 308 aa15.06■□□□□ 0
TOP3A-210ENST00000580713 C9orf131Q5VYM1 1079 aa15.06■□□□□ 0
TOP3A-210ENST00000580713 PXDNLA1KZ92 1463 aa15.06■□□□□ 0
TOP3A-210ENST00000580713 WDR90Q96KV7 1748 aa15.06■□□□□ 0
TOP3A-210ENST00000580713 UBR3Q6ZT12 1888 aa15.06■□□□□ 0
TOP3A-210ENST00000580713 PUS7Q96PZ0 661 aaKnown RBP15.05■□□□□ -0
TOP3A-210ENST00000580713 TOGARAM1Q9Y4F4 1720 aa15.05■□□□□ -0
TOP3A-210ENST00000580713 DPEP1P16444 411 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 ATP6V1AP38606 617 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 TMF1P82094 1093 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 HSP90AB2PQ58FF8 381 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 CCER1Q8TC90 406 aaPredicted RBP15.04■□□□□ -0
TOP3A-210ENST00000580713 GGNBP2Q9H3C7 697 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 CCDC87Q9NVE4 849 aa15.04■□□□□ -0
TOP3A-210ENST00000580713 KDM2BQ8NHM5 1336 aa15.03■□□□□ -0
TOP3A-210ENST00000580713 ITPK1Q13572 414 aa15.03■□□□□ -0
TOP3A-210ENST00000580713 NLGN1Q8N2Q7 840 aa15.03■□□□□ -0
TOP3A-210ENST00000580713 TMOD3Q9NYL9 352 aa15.03■□□□□ -0
TOP3A-210ENST00000580713 PLEKHG2Q9H7P9 1386 aa15.02■□□□□ -0
TOP3A-210ENST00000580713 TRAPPC3LQ5T215 181 aa15.02■□□□□ -0
TOP3A-210ENST00000580713 RRAGCQ9HB90 399 aa15.02■□□□□ -0
TOP3A-210ENST00000580713 ASAP1Q9ULH1 1129 aa15.02■□□□□ -0
TOP3A-210ENST00000580713 RTCBQ9Y3I0 505 aaKnown RBP15.02■□□□□ -0
TOP3A-210ENST00000580713 N4BP2Q86UW6 1770 aaPredicted RBP15.01□□□□□ -0.01
TOP3A-210ENST00000580713 INSRP06213 1382 aa15.01□□□□□ -0.01
TOP3A-210ENST00000580713 RNF181Q9P0P0 153 aa15.01□□□□□ -0.01
TOP3A-210ENST00000580713 SPG7Q9UQ90 795 aa15.01□□□□□ -0.01
TOP3A-210ENST00000580713 PARP3Q9Y6F1 533 aa15.01□□□□□ -0.01
TOP3A-210ENST00000580713 ITGB4P16144 1822 aa15.01□□□□□ -0.01
TOP3A-210ENST00000580713 FYB1O15117 783 aa15□□□□□ -0.01
TOP3A-210ENST00000580713 KCPQ6ZWJ8 1503 aa14.99□□□□□ -0.01
TOP3A-210ENST00000580713 NKX1-1Q15270 411 aaPredicted RBP14.99□□□□□ -0.01
TOP3A-210ENST00000580713 SMC1BQ8NDV3 1235 aa14.99□□□□□ -0.01
TOP3A-210ENST00000580713 C10orf71Q711Q0 1435 aa14.99□□□□□ -0.01
TOP3A-210ENST00000580713 FLT4P35916 1363 aa14.98□□□□□ -0.01
TOP3A-210ENST00000580713 HSPA1AP0DMV8 641 aaKnown RBP14.98□□□□□ -0.01
TOP3A-210ENST00000580713 HSPA1BP0DMV9 641 aaKnown RBP14.98□□□□□ -0.01
TOP3A-210ENST00000580713 RFC4P35249 363 aa14.98□□□□□ -0.01
TOP3A-210ENST00000580713 ARHGEF1Q92888 912 aaKnown RBP14.98□□□□□ -0.01
TOP3A-210ENST00000580713 PIM2Q9P1W9 311 aa14.98□□□□□ -0.01
TOP3A-210ENST00000580713 DALRD3Q5D0E6 543 aaKnown RBP14.97□□□□□ -0.01
TOP3A-210ENST00000580713 RBM42Q9BTD8 480 aaKnown RBP14.97□□□□□ -0.01
TOP3A-210ENST00000580713 ATG3Q9NT62 314 aa14.97□□□□□ -0.01
TOP3A-210ENST00000580713 KIF13BQ9NQT8 1826 aa14.96□□□□□ -0.01
TOP3A-210ENST00000580713 PPM1GO15355 546 aaPredicted RBP14.96□□□□□ -0.01
TOP3A-210ENST00000580713 GYS1P13807 737 aa14.96□□□□□ -0.01
TOP3A-210ENST00000580713 MAP2P11137 1827 aaKnown RBP14.96□□□□□ -0.01
TOP3A-210ENST00000580713 KIAA1551Q9HCM1 1747 aa14.95□□□□□ -0.02
TOP3A-210ENST00000580713 ST20-MTHFSA0A0A6YYL1 179 aa14.95□□□□□ -0.02
TOP3A-210ENST00000580713 KCNA3P22001 575 aa14.95□□□□□ -0.02
TOP3A-210ENST00000580713 IFNL2Q8IZJ0 200 aa14.95□□□□□ -0.02
TOP3A-210ENST00000580713 DCAF5Q96JK2 942 aa14.95□□□□□ -0.02
TOP3A-210ENST00000580713 CLSPNQ9HAW4 1339 aa14.94□□□□□ -0.02
TOP3A-210ENST00000580713 SLC24A1O60721 1099 aa14.94□□□□□ -0.02
TOP3A-210ENST00000580713 TESK2Q96S53 571 aa14.94□□□□□ -0.02
TOP3A-210ENST00000580713 EMILIN1Q9Y6C2 1016 aa14.94□□□□□ -0.02
TOP3A-210ENST00000580713 PHKG2P15735 406 aa14.93□□□□□ -0.02
TOP3A-210ENST00000580713 RC3H1Q5TC82 1133 aaKnown RBP14.93□□□□□ -0.02
TOP3A-210ENST00000580713 KIF24Q5T7B8 1368 aa14.93□□□□□ -0.02
TOP3A-210ENST00000580713 RPS6KA4O75676 772 aa14.92□□□□□ -0.02
TOP3A-210ENST00000580713 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.92□□□□□ -0.02
TOP3A-210ENST00000580713 C4AP0C0L4 1744 aa14.92□□□□□ -0.02
TOP3A-210ENST00000580713 PKD1L3Q7Z443 1732 aa14.92□□□□□ -0.02
TOP3A-210ENST00000580713 CHRNA5P30532 468 aa14.91□□□□□ -0.02
TOP3A-210ENST00000580713 SLC4A9Q96Q91 983 aa14.91□□□□□ -0.02
TOP3A-210ENST00000580713 VEGFAP15692 232 aaPredicted RBP14.9□□□□□ -0.02
TOP3A-210ENST00000580713 EYA1Q99502 592 aa14.9□□□□□ -0.02
TOP3A-210ENST00000580713 CNTNAP4Q9C0A0 1308 aa14.9□□□□□ -0.02
TOP3A-210ENST00000580713 RASSF7Q02833 373 aa14.89□□□□□ -0.03
TOP3A-210ENST00000580713 SRP68Q9UHB9 627 aaKnown RBP14.89□□□□□ -0.03
TOP3A-210ENST00000580713 ARFGEF1Q9Y6D6 1849 aa14.89□□□□□ -0.03
TOP3A-210ENST00000580713 PCNTO95613 3336 aa14.89□□□□□ -0.03
TOP3A-210ENST00000580713 BRCA1P38398 1863 aaKnown RBP14.89□□□□□ -0.03
TOP3A-210ENST00000580713 KDRP35968 1356 aa14.88□□□□□ -0.03
TOP3A-210ENST00000580713 TNRC6CQ9HCJ0 1690 aaKnown RBP14.88□□□□□ -0.03
TOP3A-210ENST00000580713 ZEB1P37275 1124 aaPredicted RBP14.88□□□□□ -0.03
TOP3A-210ENST00000580713 FKBP8Q14318 412 aa14.88□□□□□ -0.03
TOP3A-210ENST00000580713 TONSLQ96HA7 1378 aa14.87□□□□□ -0.03
TOP3A-210ENST00000580713 GLTPD2A6NH11 291 aa14.87□□□□□ -0.03
TOP3A-210ENST00000580713 DDR1Q08345 913 aa14.87□□□□□ -0.03
TOP3A-210ENST00000580713 NCAPD2Q15021 1401 aa14.86□□□□□ -0.03
TOP3A-210ENST00000580713 ERVV-2B6SEH9 535 aa14.86□□□□□ -0.03
TOP3A-210ENST00000580713 PTCD1O75127 700 aaKnown RBP14.86□□□□□ -0.03
TOP3A-210ENST00000580713 LMNB1P20700 586 aa14.86□□□□□ -0.03
TOP3A-210ENST00000580713 ZC3H4Q9UPT8 1303 aaKnown RBP14.86□□□□□ -0.03
TOP3A-210ENST00000580713 HSP90AB1P08238 724 aaKnown RBP14.85□□□□□ -0.03
TOP3A-210ENST00000580713 CRKLP46109 303 aaKnown RBP14.85□□□□□ -0.03
TOP3A-210ENST00000580713 CABP4P57796 275 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms