RNA–Protein interactions for RNA: ENST00000580646.5

GGA3-209, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-209ENST00000580646 ATG3Q9NT62 314 aa13.18□□□□□ -0.3
GGA3-209ENST00000580646 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 TOGARAM1Q9Y4F4 1720 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 U2SURPO15042 1029 aaKnown RBP13.17□□□□□ -0.3
GGA3-209ENST00000580646 MSH5O43196 834 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 HMOX1P09601 288 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 COL23A1Q86Y22 540 aaPredicted RBP13.17□□□□□ -0.3
GGA3-209ENST00000580646 ITGB4P16144 1822 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 ADAMTS7Q9UKP4 1686 aa13.17□□□□□ -0.3
GGA3-209ENST00000580646 DLG5Q8TDM6 1919 aa13.16□□□□□ -0.3
GGA3-209ENST00000580646 CABP4P57796 275 aa13.16□□□□□ -0.3
GGA3-209ENST00000580646 FLAD1Q8NFF5 587 aa13.16□□□□□ -0.3
GGA3-209ENST00000580646 SYT17Q9BSW7 474 aa13.16□□□□□ -0.3
GGA3-209ENST00000580646 FHDC1Q9C0D6 1143 aaPredicted RBP13.16□□□□□ -0.3
GGA3-209ENST00000580646 RSPH6AQ9H0K4 717 aa13.16□□□□□ -0.3
GGA3-209ENST00000580646 PNNQ9H307 717 aaKnown RBP13.16□□□□□ -0.3
GGA3-209ENST00000580646 DCAF8L1A6NGE4 600 aa13.15□□□□□ -0.3
GGA3-209ENST00000580646 U2AF1L5P0DN76 240 aaPredicted RBP13.15□□□□□ -0.3
GGA3-209ENST00000580646 POLD1P28340 1107 aa13.15□□□□□ -0.3
GGA3-209ENST00000580646 ATP6V1AP38606 617 aa13.15□□□□□ -0.3
GGA3-209ENST00000580646 C1QTNF8P60827 252 aa13.15□□□□□ -0.3
GGA3-209ENST00000580646 U2AF1Q01081 240 aaKnown RBP eCLIP13.15□□□□□ -0.3
GGA3-209ENST00000580646 AK7Q96M32 723 aa13.15□□□□□ -0.3
GGA3-209ENST00000580646 KDM6AO15550 1401 aaPredicted RBP13.14□□□□□ -0.31
GGA3-209ENST00000580646 ITPK1Q13572 414 aa13.14□□□□□ -0.31
GGA3-209ENST00000580646 AKAP4Q5JQC9 854 aa13.14□□□□□ -0.31
GGA3-209ENST00000580646 DIEXFQ68CQ4 756 aaKnown RBP13.14□□□□□ -0.31
GGA3-209ENST00000580646 LINC00116Q8NCU8 138 aa13.14□□□□□ -0.31
GGA3-209ENST00000580646 CEP350Q5VT06 3117 aa13.13□□□□□ -0.31
GGA3-209ENST00000580646 NFATC2IPQ8NCF5 419 aa13.13□□□□□ -0.31
GGA3-209ENST00000580646 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
GGA3-209ENST00000580646 PRKAR2BP31323 418 aa13.12□□□□□ -0.31
GGA3-209ENST00000580646 WDR43Q15061 677 aaKnown RBP eCLIP13.12□□□□□ -0.31
GGA3-209ENST00000580646 MTHFSDQ2M296 383 aaKnown RBP13.12□□□□□ -0.31
GGA3-209ENST00000580646 AMIGO3Q86WK7 504 aa13.12□□□□□ -0.31
GGA3-209ENST00000580646 GAS2L2Q8NHY3 880 aa13.12□□□□□ -0.31
GGA3-209ENST00000580646 SLC4A9Q96Q91 983 aa13.12□□□□□ -0.31
GGA3-209ENST00000580646 QSER1Q2KHR3 1735 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.11□□□□□ -0.31
GGA3-209ENST00000580646 CCER2I3L3R5 266 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 PHF14O94880 888 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 SSFA2P28290 1259 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 MSL1Q68DK7 614 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 SMIM5Q71RC9 77 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 PLEKHF1Q96S99 279 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
GGA3-209ENST00000580646 SIPA1L3O60292 1781 aaPredicted RBP13.11□□□□□ -0.31
GGA3-209ENST00000580646 MAP3K5Q99683 1374 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 C5P01031 1676 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 GNPATO15228 680 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 RNMTO43148 476 aaKnown RBP13.1□□□□□ -0.31
GGA3-209ENST00000580646 NEFMP07197 916 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 KLHL34Q8N239 644 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 MRS2Q9HD23 443 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 MRC1P22897 1456 aa13.1□□□□□ -0.31
GGA3-209ENST00000580646 PTCD1O75127 700 aaKnown RBP13.09□□□□□ -0.31
GGA3-209ENST00000580646 C4BP0C0L5 1744 aa13.09□□□□□ -0.31
GGA3-209ENST00000580646 CCDC184Q52MB2 194 aa13.09□□□□□ -0.31
GGA3-209ENST00000580646 PNISRQ8TF01 805 aaKnown RBP13.09□□□□□ -0.31
GGA3-209ENST00000580646 SLC52A2Q9HAB3 445 aa13.09□□□□□ -0.31
GGA3-209ENST00000580646 TUBGCP6Q96RT7 1819 aa13.09□□□□□ -0.31
GGA3-209ENST00000580646 RC3H1Q5TC82 1133 aaKnown RBP13.08□□□□□ -0.32
GGA3-209ENST00000580646 PHACTR3Q96KR7 559 aa13.08□□□□□ -0.32
GGA3-209ENST00000580646 ADAMTS8Q9UP79 889 aa13.08□□□□□ -0.32
GGA3-209ENST00000580646 TAF1LQ8IZX4 1826 aa13.07□□□□□ -0.32
GGA3-209ENST00000580646 HTATSF1O43719 755 aaKnown RBP13.07□□□□□ -0.32
GGA3-209ENST00000580646 RTCBQ9Y3I0 505 aaKnown RBP13.07□□□□□ -0.32
GGA3-209ENST00000580646 ZNF831Q5JPB2 1677 aa13.07□□□□□ -0.32
GGA3-209ENST00000580646 MAPK8IP3Q9UPT6 1336 aa13.07□□□□□ -0.32
GGA3-209ENST00000580646 GNAT3A8MTJ3 354 aa13.06□□□□□ -0.32
GGA3-209ENST00000580646 TRAPPC3LQ5T215 181 aa13.06□□□□□ -0.32
GGA3-209ENST00000580646 RUNDC1Q96C34 613 aa13.06□□□□□ -0.32
GGA3-209ENST00000580646 CNTNAP4Q9C0A0 1308 aa13.06□□□□□ -0.32
GGA3-209ENST00000580646 COL24A1Q17RW2 1714 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 RPS6KA4O75676 772 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 SLC39A6Q13433 755 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 NFE2L2Q16236 605 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 NLGN2Q8NFZ4 835 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 CEMIPQ8WUJ3 1361 aa13.05□□□□□ -0.32
GGA3-209ENST00000580646 UBR2Q8IWV8 1755 aa13.04□□□□□ -0.32
GGA3-209ENST00000580646 CICQ96RK0 1608 aaPredicted RBP13.04□□□□□ -0.32
GGA3-209ENST00000580646 ADRA2BP18089 450 aa13.04□□□□□ -0.32
GGA3-209ENST00000580646 IL17REQ8NFR9 667 aa13.04□□□□□ -0.32
GGA3-209ENST00000580646 ARHGEF1Q92888 912 aaKnown RBP13.04□□□□□ -0.32
GGA3-209ENST00000580646 CRKLP46109 303 aaKnown RBP13.03□□□□□ -0.32
GGA3-209ENST00000580646 GPR162Q16538 588 aa13.03□□□□□ -0.32
GGA3-209ENST00000580646 NCBP3Q53F19 620 aaKnown RBP13.03□□□□□ -0.32
GGA3-209ENST00000580646 DNAJC10Q8IXB1 793 aa13.03□□□□□ -0.32
GGA3-209ENST00000580646 CD2APQ9Y5K6 639 aa13.03□□□□□ -0.32
GGA3-209ENST00000580646 UBR3Q6ZT12 1888 aa13.03□□□□□ -0.32
GGA3-209ENST00000580646 RFC4P35249 363 aa13.02□□□□□ -0.33
GGA3-209ENST00000580646 TEFQ10587 303 aa13.02□□□□□ -0.33
GGA3-209ENST00000580646 NLGN1Q8N2Q7 840 aa13.02□□□□□ -0.33
GGA3-209ENST00000580646 TMPOP42166 694 aaKnown RBP13.01□□□□□ -0.33
GGA3-209ENST00000580646 LMOD3Q0VAK6 560 aa13.01□□□□□ -0.33
GGA3-209ENST00000580646 INTS5Q6P9B9 1019 aaKnown RBP13.01□□□□□ -0.33
GGA3-209ENST00000580646 MIER1Q8N108 512 aa13.01□□□□□ -0.33
GGA3-209ENST00000580646 RTF1Q92541 710 aaKnown RBP13.01□□□□□ -0.33
GGA3-209ENST00000580646 KDM3BQ7LBC6 1761 aa13.01□□□□□ -0.33
GGA3-209ENST00000580646 MMP10P09238 476 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms