RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SHANK3Q9BYB0 1731 aa19.7■□□□□ 0.74
SS18-215ENST00000580642 BRPF1P55201 1214 aaPredicted RBP19.69■□□□□ 0.74
SS18-215ENST00000580642 FAM98CQ17RN3 349 aaKnown RBP19.69■□□□□ 0.74
SS18-215ENST00000580642 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.69■□□□□ 0.74
SS18-215ENST00000580642 QTRT2Q9H974 415 aaKnown RBP19.69■□□□□ 0.74
SS18-215ENST00000580642 RARSP54136 660 aaKnown RBP19.68■□□□□ 0.74
SS18-215ENST00000580642 TWISTNBQ3B726 338 aaPredicted RBP19.68■□□□□ 0.74
SS18-215ENST00000580642 SUPT16HQ9Y5B9 1047 aaKnown RBP19.68■□□□□ 0.74
SS18-215ENST00000580642 VAMP4O75379 141 aa19.67■□□□□ 0.74
SS18-215ENST00000580642 BCL9O00512 1426 aa19.67■□□□□ 0.74
SS18-215ENST00000580642 GLI3P10071 1580 aa19.66■□□□□ 0.74
SS18-215ENST00000580642 THSD7AQ9UPZ6 1657 aa19.66■□□□□ 0.74
SS18-215ENST00000580642 NFATC2IPQ8NCF5 419 aa19.66■□□□□ 0.74
SS18-215ENST00000580642 SIPA1L3O60292 1781 aaPredicted RBP19.65■□□□□ 0.74
SS18-215ENST00000580642 NEFLP07196 543 aa19.65■□□□□ 0.74
SS18-215ENST00000580642 EIF4A1P60842 406 aaKnown RBP19.65■□□□□ 0.74
SS18-215ENST00000580642 ZNF790Q6PG37 636 aa19.65■□□□□ 0.74
SS18-215ENST00000580642 C8orf58Q8NAV2 365 aa19.65■□□□□ 0.74
SS18-215ENST00000580642 HEG1Q9ULI3 1381 aa19.65■□□□□ 0.74
SS18-215ENST00000580642 RBM6P78332 1123 aaKnown RBP19.64■□□□□ 0.73
SS18-215ENST00000580642 MIS18AQ9NYP9 233 aa19.64■□□□□ 0.73
SS18-215ENST00000580642 KDM3BQ7LBC6 1761 aa19.64■□□□□ 0.73
SS18-215ENST00000580642 RRP1P56182 461 aaKnown RBP19.63■□□□□ 0.73
SS18-215ENST00000580642 ERICH6BQ5W0A0 696 aa19.63■□□□□ 0.73
SS18-215ENST00000580642 MARCH10Q8NA82 808 aaPredicted RBP19.63■□□□□ 0.73
SS18-215ENST00000580642 TMOD3Q9NYL9 352 aa19.63■□□□□ 0.73
SS18-215ENST00000580642 TTC5Q8N0Z6 440 aa19.62■□□□□ 0.73
SS18-215ENST00000580642 KIF16BQ96L93 1317 aa19.61■□□□□ 0.73
SS18-215ENST00000580642 MS4A1P11836 297 aa19.61■□□□□ 0.73
SS18-215ENST00000580642 TSPYL6Q8N831 410 aa19.61■□□□□ 0.73
SS18-215ENST00000580642 VIRMAQ69YN4 1812 aaKnown RBP19.6■□□□□ 0.73
SS18-215ENST00000580642 IPO8O15397 1037 aaKnown RBP19.6■□□□□ 0.73
SS18-215ENST00000580642 CCDC30Q5VVM6 783 aa19.6■□□□□ 0.73
SS18-215ENST00000580642 FMNL2Q96PY5 1086 aa19.6■□□□□ 0.73
SS18-215ENST00000580642 SEPT12Q8IYM1 358 aa19.59■□□□□ 0.73
SS18-215ENST00000580642 SSH1Q8WYL5 1049 aa19.59■□□□□ 0.73
SS18-215ENST00000580642 ARHGAP45Q92619 1136 aa19.59■□□□□ 0.73
SS18-215ENST00000580642 SMC4Q9NTJ3 1288 aa19.59■□□□□ 0.73
SS18-215ENST00000580642 GIGYF1O75420 1035 aaPredicted RBP19.58■□□□□ 0.72
SS18-215ENST00000580642 PDE3AQ14432 1141 aa19.58■□□□□ 0.72
SS18-215ENST00000580642 A0A0G2JS52 829 aa19.57■□□□□ 0.72
SS18-215ENST00000580642 BCAR3O75815 825 aa19.57■□□□□ 0.72
SS18-215ENST00000580642 SNRPA1P09661 255 aaKnown RBP19.57■□□□□ 0.72
SS18-215ENST00000580642 MYT1Q01538 1121 aa19.57■□□□□ 0.72
SS18-215ENST00000580642 VSIG10Q8N0Z9 540 aa19.57■□□□□ 0.72
SS18-215ENST00000580642 PIGBQ92521 554 aa19.57■□□□□ 0.72
SS18-215ENST00000580642 ELL2O00472 640 aaPredicted RBP19.56■□□□□ 0.72
SS18-215ENST00000580642 STK31Q9BXU1 1019 aa19.56■□□□□ 0.72
SS18-215ENST00000580642 KCNQ3O43525 872 aa19.55■□□□□ 0.72
SS18-215ENST00000580642 RXRBP28702 533 aa19.55■□□□□ 0.72
SS18-215ENST00000580642 PRIM1P49642 420 aaKnown RBP19.55■□□□□ 0.72
SS18-215ENST00000580642 KRT24Q2M2I5 525 aa19.55■□□□□ 0.72
SS18-215ENST00000580642 MRPL50Q8N5N7 158 aaKnown RBP19.55■□□□□ 0.72
SS18-215ENST00000580642 TEX13AQ9BXU3 409 aaPredicted RBP19.55■□□□□ 0.72
SS18-215ENST00000580642 TOGARAM1Q9Y4F4 1720 aa19.55■□□□□ 0.72
SS18-215ENST00000580642 PAPPAQ13219 1627 aa19.54■□□□□ 0.72
SS18-215ENST00000580642 ZKSCAN2Q63HK3 967 aa19.54■□□□□ 0.72
SS18-215ENST00000580642 SMARCC1Q92922 1105 aaPredicted RBP19.54■□□□□ 0.72
SS18-215ENST00000580642 ZNF496Q96IT1 587 aaPredicted RBP19.54■□□□□ 0.72
SS18-215ENST00000580642 ERBB4Q15303 1308 aa19.53■□□□□ 0.72
SS18-215ENST00000580642 SLC39A6Q13433 755 aa19.53■□□□□ 0.72
SS18-215ENST00000580642 HDGFL1Q5TGJ6 251 aa19.53■□□□□ 0.72
SS18-215ENST00000580642 PTPRCP08575 1304 aa19.52■□□□□ 0.72
SS18-215ENST00000580642 CANXP27824 592 aaKnown RBP19.52■□□□□ 0.72
SS18-215ENST00000580642 ATG3Q9NT62 314 aa19.52■□□□□ 0.72
SS18-215ENST00000580642 DBF4Q9UBU7 674 aaPredicted RBP19.52■□□□□ 0.72
SS18-215ENST00000580642 ATF7IPQ6VMQ6 1270 aa19.51■□□□□ 0.71
SS18-215ENST00000580642 KRT27Q7Z3Y8 459 aa19.51■□□□□ 0.71
SS18-215ENST00000580642 API5Q9BZZ5 524 aaKnown RBP19.51■□□□□ 0.71
SS18-215ENST00000580642 KCPQ6ZWJ8 1503 aa19.51■□□□□ 0.71
SS18-215ENST00000580642 UBR2Q8IWV8 1755 aa19.5■□□□□ 0.71
SS18-215ENST00000580642 SLC4A2P04920 1241 aa19.5■□□□□ 0.71
SS18-215ENST00000580642 AAMPQ13685 434 aa19.5■□□□□ 0.71
SS18-215ENST00000580642 FAM196AQ6ZSG2 479 aa19.5■□□□□ 0.71
SS18-215ENST00000580642 NOB1Q9ULX3 412 aaKnown RBP19.5■□□□□ 0.71
SS18-215ENST00000580642 DOT1LQ8TEK3 1739 aa19.49■□□□□ 0.71
SS18-215ENST00000580642 FRAT1Q92837 279 aaPredicted RBP19.49■□□□□ 0.71
SS18-215ENST00000580642 SYTL4Q96C24 671 aaPredicted RBP19.49■□□□□ 0.71
SS18-215ENST00000580642 BCL2L13Q9BXK5 485 aa19.49■□□□□ 0.71
SS18-215ENST00000580642 ITGB4P16144 1822 aa19.48■□□□□ 0.71
SS18-215ENST00000580642 HMGB2P26583 209 aaKnown RBP19.48■□□□□ 0.71
SS18-215ENST00000580642 DDX21Q9NR30 783 aaKnown RBP eCLIP19.48■□□□□ 0.71
SS18-215ENST00000580642 HYPKQ9NX55 129 aa19.48■□□□□ 0.71
SS18-215ENST00000580642 RGS17Q9UGC6 210 aaPredicted RBP19.48■□□□□ 0.71
SS18-215ENST00000580642 ASAP1Q9ULH1 1129 aa19.48■□□□□ 0.71
SS18-215ENST00000580642 GTF3C3Q9Y5Q9 886 aa19.48■□□□□ 0.71
SS18-215ENST00000580642 FKBP8Q14318 412 aa19.47■□□□□ 0.71
SS18-215ENST00000580642 ILDR1Q86SU0 546 aaPredicted RBP19.47■□□□□ 0.71
SS18-215ENST00000580642 DZIP1LQ8IYY4 767 aaKnown RBP19.47■□□□□ 0.71
SS18-215ENST00000580642 CACNA1FO60840 1977 aa19.46■□□□□ 0.71
SS18-215ENST00000580642 PLIN1O60240 522 aa19.46■□□□□ 0.71
SS18-215ENST00000580642 STARD3NLO95772 234 aa19.46■□□□□ 0.71
SS18-215ENST00000580642 TRIM27P14373 513 aa19.45■□□□□ 0.7
SS18-215ENST00000580642 EIF2S2P20042 333 aaKnown RBP19.45■□□□□ 0.7
SS18-215ENST00000580642 FTSJ3Q8IY81 847 aaKnown RBP19.45■□□□□ 0.7
SS18-215ENST00000580642 ACSBG1Q96GR2 724 aa19.45■□□□□ 0.7
SS18-215ENST00000580642 BCL11BQ9C0K0 894 aaPredicted RBP19.45■□□□□ 0.7
SS18-215ENST00000580642 CHMP4BQ9H444 224 aaKnown RBP19.45■□□□□ 0.7
SS18-215ENST00000580642 NHSQ6T4R5 1651 aa19.44■□□□□ 0.7
SS18-215ENST00000580642 PTCD1O75127 700 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms