RNA–Protein interactions for RNA: ENST00000576932.5

TOM1L1-223, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 1 (best)

Gene TOM1L1, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-223	ENST00000576932	NLGN2	Q8NFZ4	835 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	SLC39A7	Q92504	469 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	OCEL1	Q9H607	264 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	ATP10D	Q9P241	1426 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	ERBB3	P21860	1342 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	TTC21B	Q7Z4L5	1316 aa		13.37	□□□□□ -0.27
TOM1L1-223	ENST00000576932	YBX3	P16989	372 aa	Known RBP eCLIP	13.36	□□□□□ -0.27	3e-12	■■□□□ 11.8
TOM1L1-223	ENST00000576932	ADCY9	O60503	1353 aa		13.35	□□□□□ -0.27
TOM1L1-223	ENST00000576932	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.35	□□□□□ -0.27
TOM1L1-223	ENST00000576932	NBPF1	Q3BBV0	1214 aa		13.34	□□□□□ -0.27
TOM1L1-223	ENST00000576932	TFCP2L1	Q9NZI6	479 aa		13.34	□□□□□ -0.27
TOM1L1-223	ENST00000576932	EVC2	Q86UK5	1308 aa		13.34	□□□□□ -0.27
TOM1L1-223	ENST00000576932	C7	P10643	843 aa		13.33	□□□□□ -0.28
TOM1L1-223	ENST00000576932	TUBGCP6	Q96RT7	1819 aa		13.33	□□□□□ -0.28
TOM1L1-223	ENST00000576932	KAT6B	Q8WYB5	2073 aa		13.32	□□□□□ -0.28
TOM1L1-223	ENST00000576932	USP54	Q70EL1	1684 aa		13.32	□□□□□ -0.28
TOM1L1-223	ENST00000576932	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.32	□□□□□ -0.28
TOM1L1-223	ENST00000576932	USP31	Q70CQ4	1352 aa		13.32	□□□□□ -0.28
TOM1L1-223	ENST00000576932	NLRP2	Q9NX02	1062 aa		13.31	□□□□□ -0.28
TOM1L1-223	ENST00000576932	CD2AP	Q9Y5K6	639 aa		13.31	□□□□□ -0.28
TOM1L1-223	ENST00000576932	HMGB2	P26583	209 aa	Known RBP	13.3	□□□□□ -0.28
TOM1L1-223	ENST00000576932	ANKRD36B	Q8N2N9	1353 aa		13.3	□□□□□ -0.28
TOM1L1-223	ENST00000576932	LY75	O60449	1722 aa		13.3	□□□□□ -0.28
TOM1L1-223	ENST00000576932	MS4A4A	Q96JQ5	239 aa		13.29	□□□□□ -0.28
TOM1L1-223	ENST00000576932	IRX5	P78411	483 aa	Predicted RBP	13.28	□□□□□ -0.28
TOM1L1-223	ENST00000576932	KTN1	Q86UP2	1357 aa	Known RBP	13.28	□□□□□ -0.28
TOM1L1-223	ENST00000576932	PPP1R37	O75864	691 aa		13.27	□□□□□ -0.29
TOM1L1-223	ENST00000576932	PDE4A	P27815	886 aa		13.27	□□□□□ -0.29
TOM1L1-223	ENST00000576932	ANKRD24	Q8TF21	1146 aa		13.27	□□□□□ -0.29
TOM1L1-223	ENST00000576932	MON2	Q7Z3U7	1717 aa		13.27	□□□□□ -0.29
TOM1L1-223	ENST00000576932	LTN1	O94822	1766 aa		13.26	□□□□□ -0.29
TOM1L1-223	ENST00000576932	NSD2	O96028	1365 aa		13.26	□□□□□ -0.29
TOM1L1-223	ENST00000576932	APLP1	P51693	650 aa		13.26	□□□□□ -0.29
TOM1L1-223	ENST00000576932	COL23A1	Q86Y22	540 aa	Predicted RBP	13.26	□□□□□ -0.29
TOM1L1-223	ENST00000576932	FAM208A	Q9UK61	1670 aa	Known RBP	13.26	□□□□□ -0.29
TOM1L1-223	ENST00000576932	FLAD1	Q8NFF5	587 aa		13.25	□□□□□ -0.29
TOM1L1-223	ENST00000576932	CCNL1	Q9UK58	526 aa	Predicted RBP	13.25	□□□□□ -0.29
TOM1L1-223	ENST00000576932	KIF3C	O14782	793 aa		13.24	□□□□□ -0.29
TOM1L1-223	ENST00000576932	PRIM1	P49642	420 aa	Known RBP	13.24	□□□□□ -0.29
TOM1L1-223	ENST00000576932	DDX54	Q8TDD1	881 aa	Known RBP	13.24	□□□□□ -0.29
TOM1L1-223	ENST00000576932	DOT1L	Q8TEK3	1739 aa		13.24	□□□□□ -0.29
TOM1L1-223	ENST00000576932	KCNQ4	P56696	695 aa		13.23	□□□□□ -0.29
TOM1L1-223	ENST00000576932	SYTL4	Q96C24	671 aa	Predicted RBP	13.23	□□□□□ -0.29
TOM1L1-223	ENST00000576932	DNAJC5G	Q8N7S2	189 aa		13.22	□□□□□ -0.29
TOM1L1-223	ENST00000576932	ZNF526	Q8TF50	670 aa	Predicted RBP	13.22	□□□□□ -0.29
TOM1L1-223	ENST00000576932	METRN	Q9UJH8	293 aa		13.22	□□□□□ -0.29
TOM1L1-223	ENST00000576932	BOLA1	Q9Y3E2	137 aa		13.22	□□□□□ -0.29
TOM1L1-223	ENST00000576932	USP47	Q96K76	1375 aa		13.21	□□□□□ -0.29
TOM1L1-223	ENST00000576932	SBNO2	Q9Y2G9	1366 aa		13.21	□□□□□ -0.29
TOM1L1-223	ENST00000576932	PDCD7	Q8N8D1	485 aa	Known RBP	13.21	□□□□□ -0.29
TOM1L1-223	ENST00000576932	IP6K1	Q92551	441 aa		13.21	□□□□□ -0.29
TOM1L1-223	ENST00000576932	CIC	Q96RK0	1608 aa	Predicted RBP	13.21	□□□□□ -0.3
TOM1L1-223	ENST00000576932	TOMM70	O94826	608 aa		13.2	□□□□□ -0.3
TOM1L1-223	ENST00000576932	MSL1	Q68DK7	614 aa		13.2	□□□□□ -0.3
TOM1L1-223	ENST00000576932	NME9	Q86XW9	330 aa		13.2	□□□□□ -0.3
TOM1L1-223	ENST00000576932	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.2	□□□□□ -0.3	1e-6	■■□□□ 13.3
TOM1L1-223	ENST00000576932	IGSF1	Q8N6C5	1336 aa		13.19	□□□□□ -0.3
TOM1L1-223	ENST00000576932	C5	P01031	1676 aa		13.19	□□□□□ -0.3
TOM1L1-223	ENST00000576932	CD163L1	Q9NR16	1453 aa		13.19	□□□□□ -0.3
TOM1L1-223	ENST00000576932	ZCRB1	Q8TBF4	217 aa	Known RBP	13.19	□□□□□ -0.3
TOM1L1-223	ENST00000576932	EDC4	Q6P2E9	1401 aa	Known RBP	13.19	□□□□□ -0.3
TOM1L1-223	ENST00000576932	CGNL1	Q0VF96	1302 aa		13.18	□□□□□ -0.3
TOM1L1-223	ENST00000576932	NBR1	Q14596	966 aa		13.18	□□□□□ -0.3
TOM1L1-223	ENST00000576932	MICALL2	Q8IY33	904 aa		13.18	□□□□□ -0.3
TOM1L1-223	ENST00000576932	NSD3	Q9BZ95	1437 aa		13.17	□□□□□ -0.3
TOM1L1-223	ENST00000576932	TMC2	Q8TDI7	906 aa		13.17	□□□□□ -0.3
TOM1L1-223	ENST00000576932	TAF1L	Q8IZX4	1826 aa		13.16	□□□□□ -0.3
TOM1L1-223	ENST00000576932	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.16	□□□□□ -0.3
TOM1L1-223	ENST00000576932	MEGF6	O75095	1541 aa		13.15	□□□□□ -0.3
TOM1L1-223	ENST00000576932	JMY	Q8N9B5	988 aa		13.15	□□□□□ -0.3
TOM1L1-223	ENST00000576932	ROCK2	O75116	1388 aa	Known RBP	13.15	□□□□□ -0.3
TOM1L1-223	ENST00000576932	DPY19L2	Q6NUT2	758 aa		13.14	□□□□□ -0.31
TOM1L1-223	ENST00000576932	C3orf67	Q6ZVT6	689 aa		13.14	□□□□□ -0.31
TOM1L1-223	ENST00000576932	DDX27	Q96GQ7	796 aa	Known RBP	13.14	□□□□□ -0.31
TOM1L1-223	ENST00000576932	LARP6	Q9BRS8	491 aa	Known RBP	13.14	□□□□□ -0.31
TOM1L1-223	ENST00000576932	C4B	P0C0L5	1744 aa		13.13	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PALLD	Q8WX93	1383 aa		13.13	□□□□□ -0.31
TOM1L1-223	ENST00000576932	TERF2IP	Q9NYB0	399 aa		13.13	□□□□□ -0.31
TOM1L1-223	ENST00000576932	WDR90	Q96KV7	1748 aa		13.13	□□□□□ -0.31
TOM1L1-223	ENST00000576932	RTL1	A6NKG5	1358 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	SSFA2	P28290	1259 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	HOXC9	P31274	260 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	RBM46	Q8TBY0	533 aa	Known RBP	13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	SMARCC1	Q92922	1105 aa	Predicted RBP	13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	L3MBTL2	Q969R5	705 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	KLRG1	Q96E93	195 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	LTV1	Q96GA3	475 aa	Predicted RBP	13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	AK7	Q96M32	723 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PUS7	Q96PZ0	661 aa	Known RBP	13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	TOGARAM1	Q9Y4F4	1720 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	UBR3	Q6ZT12	1888 aa		13.12	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PCNT	O95613	3336 aa		13.11	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PRELP	P51888	382 aa		13.11	□□□□□ -0.31
TOM1L1-223	ENST00000576932	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.11	□□□□□ -0.31
TOM1L1-223	ENST00000576932	MAP3K19	Q56UN5	1328 aa		13.11	□□□□□ -0.31
TOM1L1-223	ENST00000576932		A0A1W2PP64	1363 aa		13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	FSTL1	Q12841	308 aa		13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	CRISPLD2	Q9H0B8	497 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms