RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 FHDC1Q9C0D6 1143 aaPredicted RBP10.59□□□□□ -0.71
NUP88-213ENST00000576862 FAM196BA6NMK8 535 aa10.58□□□□□ -0.72
NUP88-213ENST00000576862 TPCN2Q8NHX9 752 aa10.58□□□□□ -0.72
NUP88-213ENST00000576862 GRIP2Q9C0E4 1043 aa10.58□□□□□ -0.72
NUP88-213ENST00000576862 ZNF358Q9NW07 568 aa10.58□□□□□ -0.72
NUP88-213ENST00000576862 USP17L15C9J2P7 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L10C9JJH3 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L13C9JLJ4 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L12C9JPN9 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L11C9JVI0 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L21D6R901 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L18D6R9N7 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L22D6RA61 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L17D6RBQ6 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L19D6RCP7 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L20D6RJB6 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 MAN1A2O60476 641 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 USP17L24Q0WX57 530 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 SLC4A9Q96Q91 983 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 SERTAD1Q9UHV2 236 aa10.57□□□□□ -0.72
NUP88-213ENST00000576862 LARP1Q6PKG0 1096 aaKnown RBP10.56□□□□□ -0.72
NUP88-213ENST00000576862 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.55□□□□□ -0.72
NUP88-213ENST00000576862 PBXIP1Q96AQ6 731 aa10.55□□□□□ -0.72
NUP88-213ENST00000576862 ARXQ96QS3 562 aa10.55□□□□□ -0.72
NUP88-213ENST00000576862 SFI1A8K8P3 1242 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 SMTNP53814 917 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 MTFR1Q15390 333 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 TLR1Q15399 786 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 LYSMD3Q7Z3D4 306 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 PRICKLE2Q7Z3G6 844 aa10.54□□□□□ -0.72
NUP88-213ENST00000576862 DPYDQ12882 1025 aa10.53□□□□□ -0.72
NUP88-213ENST00000576862 SLC27A3Q5K4L6 730 aa10.53□□□□□ -0.72
NUP88-213ENST00000576862 ANKMY2Q8IV38 441 aa10.53□□□□□ -0.72
NUP88-213ENST00000576862 ARID3AQ99856 593 aa10.53□□□□□ -0.72
NUP88-213ENST00000576862 EPHA4P54764 986 aa10.52□□□□□ -0.73
NUP88-213ENST00000576862 ZSCAN10Q96SZ4 725 aaPredicted RBP10.52□□□□□ -0.73
NUP88-213ENST00000576862 USP3Q9Y6I4 520 aa10.52□□□□□ -0.73
NUP88-213ENST00000576862 A6NJY4 79 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 SPATA31C2B4DYI2 1134 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 BACH1O14867 736 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 ATG7O95352 703 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 RHOQP17081 205 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 SEC13P55735 322 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 POU4F2Q12837 409 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 ZNF295-AS1Q8N0V1 137 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 ZMIZ1Q9ULJ6 1067 aa10.51□□□□□ -0.73
NUP88-213ENST00000576862 IQSEC3Q9UPP2 1182 aaPredicted RBP10.51□□□□□ -0.73
NUP88-213ENST00000576862 SENP3-EIF4A1A0A087X0R7 540 aa10.5□□□□□ -0.73
NUP88-213ENST00000576862 M0R2N6 131 aa10.5□□□□□ -0.73
NUP88-213ENST00000576862 PTSQ03393 145 aa10.5□□□□□ -0.73
NUP88-213ENST00000576862 PPARGC1BQ86YN6 1023 aaKnown RBP10.5□□□□□ -0.73
NUP88-213ENST00000576862 TNS4Q8IZW8 715 aa10.5□□□□□ -0.73
NUP88-213ENST00000576862 NOVA2Q9UNW9 492 aaKnown RBP10.5□□□□□ -0.73
NUP88-213ENST00000576862 FOXK2Q01167 660 aa10.49□□□□□ -0.73
NUP88-213ENST00000576862 ELOAQ14241 798 aaKnown RBP10.49□□□□□ -0.73
NUP88-213ENST00000576862 NBPF10Q6P3W6 841 aaKnown RBP10.49□□□□□ -0.73
NUP88-213ENST00000576862 NBPF15Q8N660 670 aa10.49□□□□□ -0.73
NUP88-213ENST00000576862 TSEN2Q8NCE0 465 aaKnown RBP10.49□□□□□ -0.73
NUP88-213ENST00000576862 CDK2AP1O14519 115 aa10.48□□□□□ -0.73
NUP88-213ENST00000576862 TMEM214Q6NUQ4 689 aaKnown RBP10.48□□□□□ -0.73
NUP88-213ENST00000576862 SCHIP1Q9P0W5 487 aaPredicted RBP10.48□□□□□ -0.73
NUP88-213ENST00000576862 SLC35F4A4IF30 521 aa10.47□□□□□ -0.73
NUP88-213ENST00000576862 C4orf17Q53FE4 359 aa10.47□□□□□ -0.73
NUP88-213ENST00000576862 RHBDD1Q8TEB9 315 aa10.47□□□□□ -0.73
NUP88-213ENST00000576862 STK32AQ8WU08 396 aa10.47□□□□□ -0.73
NUP88-213ENST00000576862 RBM19Q9Y4C8 960 aaKnown RBP10.47□□□□□ -0.73
NUP88-213ENST00000576862 PPP1R15AO75807 674 aaPredicted RBP10.46□□□□□ -0.73
NUP88-213ENST00000576862 TAS1R3Q7RTX0 852 aa10.46□□□□□ -0.73
NUP88-213ENST00000576862 FAM200AQ8TCP9 573 aa10.46□□□□□ -0.73
NUP88-213ENST00000576862 PHKA2P46019 1235 aa10.45□□□□□ -0.74
NUP88-213ENST00000576862 WDR44Q5JSH3 913 aa10.45□□□□□ -0.74
NUP88-213ENST00000576862 GNASQ5JWF2 1037 aa10.45□□□□□ -0.74
NUP88-213ENST00000576862 TBCELQ5QJ74 424 aa10.45□□□□□ -0.74
NUP88-213ENST00000576862 TSPAN10Q9H1Z9 355 aaPredicted RBP10.45□□□□□ -0.74
NUP88-213ENST00000576862 LGR5O75473 907 aa10.44□□□□□ -0.74
NUP88-213ENST00000576862 FAM69CQ0P6D2 419 aa10.44□□□□□ -0.74
NUP88-213ENST00000576862 SLC9A9Q8IVB4 645 aa10.44□□□□□ -0.74
NUP88-213ENST00000576862 CCDC155Q8N6L0 562 aa10.44□□□□□ -0.74
NUP88-213ENST00000576862 NXF1Q9UBU9 619 aaKnown RBP10.44□□□□□ -0.74
NUP88-213ENST00000576862 C21orf2O43822 256 aa10.43□□□□□ -0.74
NUP88-213ENST00000576862 GTF2E1P29083 439 aaPredicted RBP10.43□□□□□ -0.74
NUP88-213ENST00000576862 TMEM164Q5U3C3 297 aa10.43□□□□□ -0.74
NUP88-213ENST00000576862 ZNF775Q96BV0 537 aaPredicted RBP10.43□□□□□ -0.74
NUP88-213ENST00000576862 NIFKQ9BYG3 293 aaKnown RBP10.43□□□□□ -0.74
NUP88-213ENST00000576862 PPFIA3O75145 1194 aa10.42□□□□□ -0.74
NUP88-213ENST00000576862 ZDHHC1Q8WTX9 485 aa10.42□□□□□ -0.74
NUP88-213ENST00000576862 TIMMDC1Q9NPL8 285 aa10.42□□□□□ -0.74
NUP88-213ENST00000576862 ACIN1Q9UKV3 1341 aaKnown RBP10.41□□□□□ -0.74
NUP88-213ENST00000576862 TERTO14746 1132 aaKnown RBP10.41□□□□□ -0.74
NUP88-213ENST00000576862 PLA2G4AP47712 749 aa10.41□□□□□ -0.74
NUP88-213ENST00000576862 VEGFBP49765 207 aa10.41□□□□□ -0.74
NUP88-213ENST00000576862 HINFPQ9BQA5 517 aa10.41□□□□□ -0.74
NUP88-213ENST00000576862 DYRK1BQ9Y463 629 aa10.41□□□□□ -0.74
NUP88-213ENST00000576862 TEAD4Q15561 434 aa10.4□□□□□ -0.74
NUP88-213ENST00000576862 CABP1Q9NZU7 370 aa10.4□□□□□ -0.74
NUP88-213ENST00000576862 PARP3Q9Y6F1 533 aa10.4□□□□□ -0.74
NUP88-213ENST00000576862 H3BM21 787 aa10.39□□□□□ -0.75
NUP88-213ENST00000576862 SH3PXD2AQ5TCZ1 1133 aa10.39□□□□□ -0.75
NUP88-213ENST00000576862 POTEAQ6S8J7 498 aa10.39□□□□□ -0.75
NUP88-213ENST00000576862 NPAS3Q8IXF0 933 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms