RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FCHSD2O94868 740 aa27.42■■□□□ 1.98
VPS53-210ENST00000571456 PCDH11XQ9BZA7 1347 aa27.41■■□□□ 1.98
VPS53-210ENST00000571456 PCDH11YQ9BZA8 1340 aa27.41■■□□□ 1.98
VPS53-210ENST00000571456 APLP1P51693 650 aa27.41■■□□□ 1.98
VPS53-210ENST00000571456 MSL1Q68DK7 614 aa27.41■■□□□ 1.98
VPS53-210ENST00000571456 SYTL4Q96C24 671 aaPredicted RBP27.41■■□□□ 1.98
VPS53-210ENST00000571456 U2AF1L5P0DN76 240 aaPredicted RBP27.4■■□□□ 1.98
VPS53-210ENST00000571456 U2AF1Q01081 240 aaKnown RBP eCLIP27.4■■□□□ 1.98
VPS53-210ENST00000571456 PLEKHO1Q53GL0 409 aaPredicted RBP27.4■■□□□ 1.98
VPS53-210ENST00000571456 DIEXFQ68CQ4 756 aaKnown RBP27.4■■□□□ 1.98
VPS53-210ENST00000571456 DOT1LQ8TEK3 1739 aa27.39■■□□□ 1.98
VPS53-210ENST00000571456 KIF3CO14782 793 aa27.39■■□□□ 1.98
VPS53-210ENST00000571456 PRIM1P49642 420 aaKnown RBP27.39■■□□□ 1.98
VPS53-210ENST00000571456 CCNL1Q9UK58 526 aaPredicted RBP27.39■■□□□ 1.98
VPS53-210ENST00000571456 AEBP1Q8IUX7 1158 aa27.38■■□□□ 1.97
VPS53-210ENST00000571456 HMOX1P09601 288 aa27.36■■□□□ 1.97
VPS53-210ENST00000571456 DNAJC5GQ8N7S2 189 aa27.36■■□□□ 1.97
VPS53-210ENST00000571456 NEFMP07197 916 aa27.35■■□□□ 1.97
VPS53-210ENST00000571456 WDR43Q15061 677 aaKnown RBP eCLIP27.35■■□□□ 1.97
VPS53-210ENST00000571456 RSPH6AQ9H0K4 717 aa27.34■■□□□ 1.97
VPS53-210ENST00000571456 IFNL2Q8IZJ0 200 aa27.33■■□□□ 1.97
VPS53-210ENST00000571456 HSP90AB1P08238 724 aaKnown RBP27.32■■□□□ 1.96
VPS53-210ENST00000571456 GAS2L2Q8NHY3 880 aa27.3■■□□□ 1.96
VPS53-210ENST00000571456 MRS2Q9HD23 443 aa27.3■■□□□ 1.96
VPS53-210ENST00000571456 PRKAR2BP31323 418 aa27.29■■□□□ 1.96
VPS53-210ENST00000571456 NKX1-1Q15270 411 aaPredicted RBP27.29■■□□□ 1.96
VPS53-210ENST00000571456 C5P01031 1676 aa27.29■■□□□ 1.96
VPS53-210ENST00000571456 CCER2I3L3R5 266 aa27.28■■□□□ 1.96
VPS53-210ENST00000571456 C1orf141Q5JVX7 400 aa27.28■■□□□ 1.96
VPS53-210ENST00000571456 CYP27B1O15528 508 aa27.27■■□□□ 1.96
VPS53-210ENST00000571456 PHKG2P15735 406 aa27.27■■□□□ 1.96
VPS53-210ENST00000571456 ZNF530Q6P9A1 599 aaPredicted RBP27.27■■□□□ 1.96
VPS53-210ENST00000571456 FLAD1Q8NFF5 587 aa27.27■■□□□ 1.96
VPS53-210ENST00000571456 TOMM70O94826 608 aa27.26■■□□□ 1.95
VPS53-210ENST00000571456 WWC3Q9ULE0 1092 aa27.26■■□□□ 1.95
VPS53-210ENST00000571456 AKAP4Q5JQC9 854 aa27.25■■□□□ 1.95
VPS53-210ENST00000571456 TAF1LQ8IZX4 1826 aa27.25■■□□□ 1.95
VPS53-210ENST00000571456 MAPK8IP3Q9UPT6 1336 aa27.24■■□□□ 1.95
VPS53-210ENST00000571456 COL13A1Q5TAT6 717 aaPredicted RBP27.24■■□□□ 1.95
VPS53-210ENST00000571456 CAPN15O75808 1086 aa27.23■■□□□ 1.95
VPS53-210ENST00000571456 DCAF5Q96JK2 942 aa27.23■■□□□ 1.95
VPS53-210ENST00000571456 WDR90Q96KV7 1748 aa27.23■■□□□ 1.95
VPS53-210ENST00000571456 PCNTO95613 3336 aa27.22■■□□□ 1.95
VPS53-210ENST00000571456 HMGB2P26583 209 aaKnown RBP27.22■■□□□ 1.95
VPS53-210ENST00000571456 MTHFSDQ2M296 383 aaKnown RBP27.22■■□□□ 1.95
VPS53-210ENST00000571456 PNISRQ8TF01 805 aaKnown RBP27.22■■□□□ 1.95
VPS53-210ENST00000571456 PLEKHF1Q96S99 279 aa27.22■■□□□ 1.95
VPS53-210ENST00000571456 ADAMTS8Q9UP79 889 aa27.21■■□□□ 1.95
VPS53-210ENST00000571456 CICQ96RK0 1608 aaPredicted RBP27.19■■□□□ 1.94
VPS53-210ENST00000571456 RUNDC1Q96C34 613 aa27.19■■□□□ 1.94
VPS53-210ENST00000571456 SCN11AQ9UI33 1791 aa27.19■■□□□ 1.94
VPS53-210ENST00000571456 ERVV-2B6SEH9 535 aa27.18■■□□□ 1.94
VPS53-210ENST00000571456 HTATSF1O43719 755 aaKnown RBP27.18■■□□□ 1.94
VPS53-210ENST00000571456 CCDC184Q52MB2 194 aa27.18■■□□□ 1.94
VPS53-210ENST00000571456 PHACTR3Q96KR7 559 aa27.18■■□□□ 1.94
VPS53-210ENST00000571456 GNAT3A8MTJ3 354 aa27.17■■□□□ 1.94
VPS53-210ENST00000571456 ADAMTS7Q9UKP4 1686 aa27.17■■□□□ 1.94
VPS53-210ENST00000571456 VIRMAQ69YN4 1812 aaKnown RBP27.16■■□□□ 1.94
VPS53-210ENST00000571456 ITGB4P16144 1822 aa27.16■■□□□ 1.94
VPS53-210ENST00000571456 TOGARAM1Q9Y4F4 1720 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 PRELPP51888 382 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 TNS4Q8IZW8 715 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 JMYQ8N9B5 988 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 KLRG1Q96E93 195 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 UBR3Q6ZT12 1888 aa27.14■■□□□ 1.94
VPS53-210ENST00000571456 C4BP0C0L5 1744 aa27.13■■□□□ 1.93
VPS53-210ENST00000571456 NFE2L2Q16236 605 aa27.13■■□□□ 1.93
VPS53-210ENST00000571456 DLG5Q8TDM6 1919 aa27.12■■□□□ 1.93
VPS53-210ENST00000571456 LMOD3Q0VAK6 560 aa27.12■■□□□ 1.93
VPS53-210ENST00000571456 RTF1Q92541 710 aaKnown RBP27.12■■□□□ 1.93
VPS53-210ENST00000571456 KDM6AO15550 1401 aaPredicted RBP27.12■■□□□ 1.93
VPS53-210ENST00000571456 AK7Q96M32 723 aa27.11■■□□□ 1.93
VPS53-210ENST00000571456 NMRK2Q9NPI5 230 aa27.11■■□□□ 1.93
VPS53-210ENST00000571456 PALLDQ8WX93 1383 aa27.1■■□□□ 1.93
VPS53-210ENST00000571456 RBM46Q8TBY0 533 aaKnown RBP27.1■■□□□ 1.93
VPS53-210ENST00000571456 TMOD3Q9NYL9 352 aa27.1■■□□□ 1.93
VPS53-210ENST00000571456 MRC1P22897 1456 aa27.09■■□□□ 1.93
VPS53-210ENST00000571456 RNMTO43148 476 aaKnown RBP27.09■■□□□ 1.93
VPS53-210ENST00000571456 NCBP3Q53F19 620 aaKnown RBP27.09■■□□□ 1.93
VPS53-210ENST00000571456 MPRIPQ6WCQ1 1025 aa27.09■■□□□ 1.93
VPS53-210ENST00000571456 AMIGO3Q86WK7 504 aa27.09■■□□□ 1.93
VPS53-210ENST00000571456 HTRA3P83110 453 aa27.08■■□□□ 1.93
VPS53-210ENST00000571456 MIER1Q8N108 512 aa27.08■■□□□ 1.93
VPS53-210ENST00000571456 PHF14O94880 888 aa27.07■■□□□ 1.92
VPS53-210ENST00000571456 TMPOP42166 694 aaKnown RBP27.07■■□□□ 1.92
VPS53-210ENST00000571456 CABP4P57796 275 aa27.07■■□□□ 1.92
VPS53-210ENST00000571456 CEMIPQ8WUJ3 1361 aa27.07■■□□□ 1.92
VPS53-210ENST00000571456 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.06■■□□□ 1.92
VPS53-210ENST00000571456 SMARCC1Q92922 1105 aaPredicted RBP27.06■■□□□ 1.92
VPS53-210ENST00000571456 CCDC146Q8IYE0 955 aa27.05■■□□□ 1.92
VPS53-210ENST00000571456 NGEFQ8N5V2 710 aa27.05■■□□□ 1.92
VPS53-210ENST00000571456 SLC52A2Q9HAB3 445 aa27.05■■□□□ 1.92
VPS53-210ENST00000571456 KIF13BQ9NQT8 1826 aa27.04■■□□□ 1.92
VPS53-210ENST00000571456 TEFQ10587 303 aa27.04■■□□□ 1.92
VPS53-210ENST00000571456 C16orf71Q8IYS4 520 aaPredicted RBP27.04■■□□□ 1.92
VPS53-210ENST00000571456 N4BP2Q86UW6 1770 aaPredicted RBP27.04■■□□□ 1.92
VPS53-210ENST00000571456 RIPK4P57078 832 aa27.03■■□□□ 1.92
VPS53-210ENST00000571456 SMIM5Q71RC9 77 aa27.03■■□□□ 1.92
VPS53-210ENST00000571456 FAM9BQ8IZU0 186 aa27.03■■□□□ 1.92
VPS53-210ENST00000571456 PXDNLA1KZ92 1463 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms