RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 USHBP1Q8N6Y0 703 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 L3MBTL2Q969R5 705 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 RRAGCQ9HB90 399 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 PIGBQ92521 554 aa25.71■■□□□ 1.71
CLK3-227ENST00000570296 C4AP0C0L4 1744 aa25.71■■□□□ 1.71
CLK3-227ENST00000570296 CYP27B1O15528 508 aa25.7■■□□□ 1.7
CLK3-227ENST00000570296 NLGN1Q8N2Q7 840 aa25.7■■□□□ 1.7
CLK3-227ENST00000570296 CCDC87Q9NVE4 849 aa25.7■■□□□ 1.7
CLK3-227ENST00000570296 SBF1O95248 1867 aa25.69■■□□□ 1.7
CLK3-227ENST00000570296 RNF181Q9P0P0 153 aa25.68■■□□□ 1.7
CLK3-227ENST00000570296 FBLN1P23142 703 aa25.67■■□□□ 1.7
CLK3-227ENST00000570296 TMF1P82094 1093 aa25.67■■□□□ 1.7
CLK3-227ENST00000570296 DCAF5Q96JK2 942 aa25.66■■□□□ 1.7
CLK3-227ENST00000570296 KCNA3P22001 575 aa25.65■■□□□ 1.7
CLK3-227ENST00000570296 ITPK1Q13572 414 aa25.65■■□□□ 1.7
CLK3-227ENST00000570296 PUS7Q96PZ0 661 aaKnown RBP25.65■■□□□ 1.7
CLK3-227ENST00000570296 PIM2Q9P1W9 311 aa25.65■■□□□ 1.7
CLK3-227ENST00000570296 NKX1-1Q15270 411 aaPredicted RBP25.64■■□□□ 1.7
CLK3-227ENST00000570296 ZC3H4Q9UPT8 1303 aaKnown RBP25.63■■□□□ 1.69
CLK3-227ENST00000570296 TRAPPC3LQ5T215 181 aa25.63■■□□□ 1.69
CLK3-227ENST00000570296 ATP6V1AP38606 617 aa25.62■■□□□ 1.69
CLK3-227ENST00000570296 DALRD3Q5D0E6 543 aaKnown RBP25.62■■□□□ 1.69
CLK3-227ENST00000570296 RRS1Q15050 365 aaKnown RBP25.61■■□□□ 1.69
CLK3-227ENST00000570296 RTCBQ9Y3I0 505 aaKnown RBP25.61■■□□□ 1.69
CLK3-227ENST00000570296 PARP3Q9Y6F1 533 aa25.61■■□□□ 1.69
CLK3-227ENST00000570296 INSRP06213 1382 aa25.6■■□□□ 1.69
CLK3-227ENST00000570296 ADRA2BP18089 450 aa25.6■■□□□ 1.69
CLK3-227ENST00000570296 PCDH10Q9P2E7 1040 aa25.6■■□□□ 1.69
CLK3-227ENST00000570296 TMOD3Q9NYL9 352 aa25.59■■□□□ 1.69
CLK3-227ENST00000570296 ZNF831Q5JPB2 1677 aa25.58■■□□□ 1.69
CLK3-227ENST00000570296 GYS1P13807 737 aa25.58■■□□□ 1.69
CLK3-227ENST00000570296 VEGFAP15692 232 aaPredicted RBP25.58■■□□□ 1.69
CLK3-227ENST00000570296 ASAP1Q9ULH1 1129 aa25.58■■□□□ 1.69
CLK3-227ENST00000570296 ARHGEF1Q92888 912 aaKnown RBP25.55■■□□□ 1.68
CLK3-227ENST00000570296 KIF24Q5T7B8 1368 aa25.55■■□□□ 1.68
CLK3-227ENST00000570296 KDM6AO15550 1401 aaPredicted RBP25.54■■□□□ 1.68
CLK3-227ENST00000570296 HSP90AB2PQ58FF8 381 aa25.54■■□□□ 1.68
CLK3-227ENST00000570296 FLT4P35916 1363 aa25.54■■□□□ 1.68
CLK3-227ENST00000570296 KDRP35968 1356 aa25.54■■□□□ 1.68
CLK3-227ENST00000570296 RC3H1Q5TC82 1133 aaKnown RBP25.53■■□□□ 1.68
CLK3-227ENST00000570296 SPG7Q9UQ90 795 aa25.53■■□□□ 1.68
CLK3-227ENST00000570296 COL5A3P25940 1745 aaPredicted RBP25.53■■□□□ 1.68
CLK3-227ENST00000570296 GLTPD2A6NH11 291 aa25.52■■□□□ 1.68
CLK3-227ENST00000570296 RFC4P35249 363 aa25.52■■□□□ 1.68
CLK3-227ENST00000570296 PRDM10Q9NQV6 1147 aa25.52■■□□□ 1.68
CLK3-227ENST00000570296 ATG3Q9NT62 314 aa25.52■■□□□ 1.68
CLK3-227ENST00000570296 NCAPD2Q15021 1401 aa25.52■■□□□ 1.68
CLK3-227ENST00000570296 CARD11Q9BXL7 1154 aa25.51■■□□□ 1.67
CLK3-227ENST00000570296 CNTNAP4Q9C0A0 1308 aa25.5■■□□□ 1.67
CLK3-227ENST00000570296 RPS6KA4O75676 772 aa25.48■■□□□ 1.67
CLK3-227ENST00000570296 CREBZFQ9NS37 354 aa25.48■■□□□ 1.67
CLK3-227ENST00000570296 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.48■■□□□ 1.67
CLK3-227ENST00000570296 TIAM2Q8IVF5 1701 aa25.48■■□□□ 1.67
CLK3-227ENST00000570296 LMNB1P20700 586 aa25.47■■□□□ 1.67
CLK3-227ENST00000570296 MYH14Q7Z406 1995 aaKnown RBP25.47■■□□□ 1.67
CLK3-227ENST00000570296 FYB1O15117 783 aa25.46■■□□□ 1.67
CLK3-227ENST00000570296 FOXN1O15353 648 aa25.46■■□□□ 1.67
CLK3-227ENST00000570296 CHRNA5P30532 468 aa25.45■■□□□ 1.66
CLK3-227ENST00000570296 RASSF7Q02833 373 aa25.44■■□□□ 1.66
CLK3-227ENST00000570296 IFNL2Q8IZJ0 200 aa25.44■■□□□ 1.66
CLK3-227ENST00000570296 SLC4A9Q96Q91 983 aa25.44■■□□□ 1.66
CLK3-227ENST00000570296 GGNBP2Q9H3C7 697 aa25.44■■□□□ 1.66
CLK3-227ENST00000570296 CCDC88AQ3V6T2 1871 aa25.44■■□□□ 1.66
CLK3-227ENST00000570296 MKRN1Q9UHC7 482 aaKnown RBP25.43■■□□□ 1.66
CLK3-227ENST00000570296 PHKG2P15735 406 aa25.42■■□□□ 1.66
CLK3-227ENST00000570296 DDR1Q08345 913 aa25.42■■□□□ 1.66
CLK3-227ENST00000570296 TONSLQ96HA7 1378 aa25.42■■□□□ 1.66
CLK3-227ENST00000570296 CTCFP49711 727 aaPredicted RBP25.41■■□□□ 1.66
CLK3-227ENST00000570296 FAM161AQ3B820 660 aa25.41■■□□□ 1.66
CLK3-227ENST00000570296 KIF20BQ96Q89 1820 aa25.41■■□□□ 1.66
CLK3-227ENST00000570296 SIN3AQ96ST3 1273 aa25.4■■□□□ 1.66
CLK3-227ENST00000570296 RBM42Q9BTD8 480 aaKnown RBP25.4■■□□□ 1.66
CLK3-227ENST00000570296 DLEC1Q9Y238 1755 aa25.39■■□□□ 1.66
CLK3-227ENST00000570296 POTECB2RU33 542 aa25.39■■□□□ 1.66
CLK3-227ENST00000570296 FKBP8Q14318 412 aa25.39■■□□□ 1.66
CLK3-227ENST00000570296 AIDAQ96BJ3 306 aa25.39■■□□□ 1.66
CLK3-227ENST00000570296 USP42Q9H9J4 1324 aaKnown RBP25.38■■□□□ 1.65
CLK3-227ENST00000570296 CNTNAP1P78357 1384 aa25.38■■□□□ 1.65
CLK3-227ENST00000570296 CHADLQ6NUI6 762 aa25.36■■□□□ 1.65
CLK3-227ENST00000570296 SRP68Q9UHB9 627 aaKnown RBP25.36■■□□□ 1.65
CLK3-227ENST00000570296 ANKRD26Q9UPS8 1709 aa25.35■■□□□ 1.65
CLK3-227ENST00000570296 ERVV-2B6SEH9 535 aa25.35■■□□□ 1.65
CLK3-227ENST00000570296 POLRMTO00411 1230 aaKnown RBP25.35■■□□□ 1.65
CLK3-227ENST00000570296 SLC24A1O60721 1099 aa25.35■■□□□ 1.65
CLK3-227ENST00000570296 DPY19L2Q6NUT2 758 aa25.35■■□□□ 1.65
CLK3-227ENST00000570296 TESK2Q96S53 571 aa25.35■■□□□ 1.65
CLK3-227ENST00000570296 NEUROD1Q13562 356 aa25.34■■□□□ 1.65
CLK3-227ENST00000570296 DICER1Q9UPY3 1922 aaKnown RBP25.33■■□□□ 1.65
CLK3-227ENST00000570296 TM4SF1P30408 202 aa25.33■■□□□ 1.65
CLK3-227ENST00000570296 ABHD8Q96I13 439 aa25.33■■□□□ 1.65
CLK3-227ENST00000570296 EMILIN1Q9Y6C2 1016 aa25.33■■□□□ 1.65
CLK3-227ENST00000570296 VIRMAQ69YN4 1812 aaKnown RBP25.32■■□□□ 1.64
CLK3-227ENST00000570296 AFDNP55196 1824 aaKnown RBP25.31■■□□□ 1.64
CLK3-227ENST00000570296 CRKLP46109 303 aaKnown RBP25.31■■□□□ 1.64
CLK3-227ENST00000570296 EYA1Q99502 592 aa25.31■■□□□ 1.64
CLK3-227ENST00000570296 ADAMTS7Q9UKP4 1686 aa25.3■■□□□ 1.64
CLK3-227ENST00000570296 TTLL6Q8N841 843 aa25.3■■□□□ 1.64
CLK3-227ENST00000570296 NRXN2Q9P2S2 1712 aa25.29■■□□□ 1.64
CLK3-227ENST00000570296 NFKBIEO00221 500 aa25.29■■□□□ 1.64
CLK3-227ENST00000570296 WBP1LQ9NX94 342 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms