RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 LINC00116Q8NCU8 138 aa27.29■■□□□ 1.96
CLK3-225ENST00000569063 FLAD1Q8NFF5 587 aa27.29■■□□□ 1.96
CLK3-225ENST00000569063 COL24A1Q17RW2 1714 aa27.28■■□□□ 1.96
CLK3-225ENST00000569063 ITPK1Q13572 414 aa27.28■■□□□ 1.96
CLK3-225ENST00000569063 AK7Q96M32 723 aa27.28■■□□□ 1.96
CLK3-225ENST00000569063 ARXQ96QS3 562 aa27.28■■□□□ 1.96
CLK3-225ENST00000569063 SCN11AQ9UI33 1791 aa27.27■■□□□ 1.96
CLK3-225ENST00000569063 ZNF831Q5JPB2 1677 aa27.26■■□□□ 1.95
CLK3-225ENST00000569063 MSH5O43196 834 aa27.25■■□□□ 1.95
CLK3-225ENST00000569063 FHDC1Q9C0D6 1143 aaPredicted RBP27.25■■□□□ 1.95
CLK3-225ENST00000569063 LGR6Q9HBX8 967 aa27.25■■□□□ 1.95
CLK3-225ENST00000569063 POLD1P28340 1107 aa27.24■■□□□ 1.95
CLK3-225ENST00000569063 SLC4A9Q96Q91 983 aa27.24■■□□□ 1.95
CLK3-225ENST00000569063 RBM42Q9BTD8 480 aaKnown RBP27.24■■□□□ 1.95
CLK3-225ENST00000569063 NUDCQ9Y266 331 aa27.24■■□□□ 1.95
CLK3-225ENST00000569063 RNMTO43148 476 aaKnown RBP27.23■■□□□ 1.95
CLK3-225ENST00000569063 AMIGO3Q86WK7 504 aa27.23■■□□□ 1.95
CLK3-225ENST00000569063 SYT17Q9BSW7 474 aa27.23■■□□□ 1.95
CLK3-225ENST00000569063 SLC52A2Q9HAB3 445 aa27.23■■□□□ 1.95
CLK3-225ENST00000569063 UBR3Q6ZT12 1888 aa27.21■■□□□ 1.95
CLK3-225ENST00000569063 SSFA2P28290 1259 aa27.21■■□□□ 1.95
CLK3-225ENST00000569063 MAP3K5Q99683 1374 aa27.21■■□□□ 1.95
CLK3-225ENST00000569063 ADAMTS7Q9UKP4 1686 aa27.21■■□□□ 1.95
CLK3-225ENST00000569063 MRC1P22897 1456 aa27.2■■□□□ 1.95
CLK3-225ENST00000569063 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.2■■□□□ 1.94
CLK3-225ENST00000569063 GAS2L2Q8NHY3 880 aa27.2■■□□□ 1.94
CLK3-225ENST00000569063 RSPH6AQ9H0K4 717 aa27.2■■□□□ 1.94
CLK3-225ENST00000569063 PTCD1O75127 700 aaKnown RBP27.18■■□□□ 1.94
CLK3-225ENST00000569063 GNPATO15228 680 aa27.17■■□□□ 1.94
CLK3-225ENST00000569063 PHF14O94880 888 aa27.17■■□□□ 1.94
CLK3-225ENST00000569063 PRKAR2BP31323 418 aa27.17■■□□□ 1.94
CLK3-225ENST00000569063 RC3H1Q5TC82 1133 aaKnown RBP27.17■■□□□ 1.94
CLK3-225ENST00000569063 DCAF8L1A6NGE4 600 aa27.16■■□□□ 1.94
CLK3-225ENST00000569063 U2AF1L5P0DN76 240 aaPredicted RBP27.16■■□□□ 1.94
CLK3-225ENST00000569063 U2AF1Q01081 240 aaKnown RBP eCLIP27.16■■□□□ 1.94
CLK3-225ENST00000569063 SMIM5Q71RC9 77 aa27.16■■□□□ 1.94
CLK3-225ENST00000569063 GNAT3A8MTJ3 354 aa27.15■■□□□ 1.94
CLK3-225ENST00000569063 FCHSD2O94868 740 aa27.15■■□□□ 1.94
CLK3-225ENST00000569063 PHACTR3Q96KR7 559 aa27.15■■□□□ 1.94
CLK3-225ENST00000569063 COL5A3P25940 1745 aaPredicted RBP27.15■■□□□ 1.94
CLK3-225ENST00000569063 CNTNAP4Q9C0A0 1308 aa27.15■■□□□ 1.94
CLK3-225ENST00000569063 VIRMAQ69YN4 1812 aaKnown RBP27.14■■□□□ 1.94
CLK3-225ENST00000569063 MSL1Q68DK7 614 aa27.14■■□□□ 1.94
CLK3-225ENST00000569063 DDX10Q13206 875 aaKnown RBP27.13■■□□□ 1.93
CLK3-225ENST00000569063 RTCBQ9Y3I0 505 aaKnown RBP27.13■■□□□ 1.93
CLK3-225ENST00000569063 IL17REQ8NFR9 667 aa27.12■■□□□ 1.93
CLK3-225ENST00000569063 CICQ96RK0 1608 aaPredicted RBP27.12■■□□□ 1.93
CLK3-225ENST00000569063 RPS6KA4O75676 772 aa27.1■■□□□ 1.93
CLK3-225ENST00000569063 ADRA2BP18089 450 aa27.1■■□□□ 1.93
CLK3-225ENST00000569063 SLC39A6Q13433 755 aa27.1■■□□□ 1.93
CLK3-225ENST00000569063 RALBP1Q15311 655 aa27.1■■□□□ 1.93
CLK3-225ENST00000569063 TRAPPC3LQ5T215 181 aa27.1■■□□□ 1.93
CLK3-225ENST00000569063 CEMIPQ8WUJ3 1361 aa27.08■■□□□ 1.93
CLK3-225ENST00000569063 TJP1Q07157 1748 aa27.07■■□□□ 1.92
CLK3-225ENST00000569063 CRKLP46109 303 aaKnown RBP27.07■■□□□ 1.92
CLK3-225ENST00000569063 KCPQ6ZWJ8 1503 aa27.06■■□□□ 1.92
CLK3-225ENST00000569063 ZEB1P37275 1124 aaPredicted RBP27.06■■□□□ 1.92
CLK3-225ENST00000569063 TEFQ10587 303 aa27.06■■□□□ 1.92
CLK3-225ENST00000569063 KLHL34Q8N239 644 aa27.06■■□□□ 1.92
CLK3-225ENST00000569063 ARHGEF1Q92888 912 aaKnown RBP27.06■■□□□ 1.92
CLK3-225ENST00000569063 VSIG10Q8N0Z9 540 aa27.05■■□□□ 1.92
CLK3-225ENST00000569063 MYH14Q7Z406 1995 aaKnown RBP27.05■■□□□ 1.92
CLK3-225ENST00000569063 DNAJC10Q8IXB1 793 aa27.04■■□□□ 1.92
CLK3-225ENST00000569063 INTS5Q6P9B9 1019 aaKnown RBP27.03■■□□□ 1.92
CLK3-225ENST00000569063 RFC4P35249 363 aa27.02■■□□□ 1.92
CLK3-225ENST00000569063 TTC5Q8N0Z6 440 aa27.02■■□□□ 1.92
CLK3-225ENST00000569063 NLGN2Q8NFZ4 835 aa27.02■■□□□ 1.92
CLK3-225ENST00000569063 CD2APQ9Y5K6 639 aa27.02■■□□□ 1.92
CLK3-225ENST00000569063 SIPA1L3O60292 1781 aaPredicted RBP27.02■■□□□ 1.92
CLK3-225ENST00000569063 UBR2Q8IWV8 1755 aa27.02■■□□□ 1.92
CLK3-225ENST00000569063 CYP19A1P11511 503 aaPredicted RBP27.01■■□□□ 1.91
CLK3-225ENST00000569063 ZNF790Q6PG37 636 aa27.01■■□□□ 1.91
CLK3-225ENST00000569063 HTATSF1O43719 755 aaKnown RBP27■■□□□ 1.91
CLK3-225ENST00000569063 NLGN1Q8N2Q7 840 aa27■■□□□ 1.91
CLK3-225ENST00000569063 CCDC87Q9NVE4 849 aa27■■□□□ 1.91
CLK3-225ENST00000569063 RTF1Q92541 710 aaKnown RBP26.99■■□□□ 1.91
CLK3-225ENST00000569063 PLEKHF1Q96S99 279 aa26.99■■□□□ 1.91
CLK3-225ENST00000569063 MYBBP1AQ9BQG0 1328 aaKnown RBP26.97■■□□□ 1.91
CLK3-225ENST00000569063 NEFMP07197 916 aa26.97■■□□□ 1.91
CLK3-225ENST00000569063 GYS1P13807 737 aa26.97■■□□□ 1.91
CLK3-225ENST00000569063 ZNF496Q96IT1 587 aaPredicted RBP26.97■■□□□ 1.91
CLK3-225ENST00000569063 PNNQ9H307 717 aaKnown RBP26.97■■□□□ 1.91
CLK3-225ENST00000569063 MMP10P09238 476 aa26.96■■□□□ 1.91
CLK3-225ENST00000569063 MCM10Q7L590 875 aa26.96■■□□□ 1.91
CLK3-225ENST00000569063 C4AP0C0L4 1744 aa26.96■■□□□ 1.91
CLK3-225ENST00000569063 BTBD11A6QL63 1104 aa26.95■■□□□ 1.9
CLK3-225ENST00000569063 GPR162Q16538 588 aa26.95■■□□□ 1.9
CLK3-225ENST00000569063 HEG1Q9ULI3 1381 aa26.95■■□□□ 1.9
CLK3-225ENST00000569063 SOS1Q07889 1333 aaPredicted RBP26.94■■□□□ 1.9
CLK3-225ENST00000569063 USP42Q9H9J4 1324 aaKnown RBP26.94■■□□□ 1.9
CLK3-225ENST00000569063 YY1P25490 414 aa26.94■■□□□ 1.9
CLK3-225ENST00000569063 TEX13AQ9BXU3 409 aaPredicted RBP26.94■■□□□ 1.9
CLK3-225ENST00000569063 STARD3NLO95772 234 aa26.93■■□□□ 1.9
CLK3-225ENST00000569063 FMNL2Q96PY5 1086 aa26.93■■□□□ 1.9
CLK3-225ENST00000569063 DCTN1Q14203 1278 aa26.92■■□□□ 1.9
CLK3-225ENST00000569063 ZBTB1Q9Y2K1 713 aa26.92■■□□□ 1.9
CLK3-225ENST00000569063 SRP68Q9UHB9 627 aaKnown RBP26.91■■□□□ 1.9
CLK3-225ENST00000569063 KCNQ3O43525 872 aa26.9■■□□□ 1.9
CLK3-225ENST00000569063 NFE2L2Q16236 605 aa26.9■■□□□ 1.9
CLK3-225ENST00000569063 UTRNP46939 3433 aa26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms