RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CABP4P57796 275 aa17.28■□□□□ 0.36
CLK3-224ENST00000568605 PROM2Q8N271 834 aa17.28■□□□□ 0.36
CLK3-224ENST00000568605 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
CLK3-224ENST00000568605 PIGBQ92521 554 aa17.27■□□□□ 0.36
CLK3-224ENST00000568605 KDM3BQ7LBC6 1761 aa17.25■□□□□ 0.35
CLK3-224ENST00000568605 COL24A1Q17RW2 1714 aa17.25■□□□□ 0.35
CLK3-224ENST00000568605 GNAT3A8MTJ3 354 aa17.25■□□□□ 0.35
CLK3-224ENST00000568605 ANP32CO43423 234 aa17.25■□□□□ 0.35
CLK3-224ENST00000568605 WDR43Q15061 677 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLK3-224ENST00000568605 ANO8Q9HCE9 1232 aaPredicted RBP17.25■□□□□ 0.35
CLK3-224ENST00000568605 SLC15A2Q16348 729 aa17.24■□□□□ 0.35
CLK3-224ENST00000568605 LAMB4A4D0S4 1761 aa17.24■□□□□ 0.35
CLK3-224ENST00000568605 C4AP0C0L4 1744 aa17.24■□□□□ 0.35
CLK3-224ENST00000568605 MYH14Q7Z406 1995 aaKnown RBP17.23■□□□□ 0.35
CLK3-224ENST00000568605 RNMTO43148 476 aaKnown RBP17.23■□□□□ 0.35
CLK3-224ENST00000568605 SLC52A2Q9HAB3 445 aa17.23■□□□□ 0.35
CLK3-224ENST00000568605 LRRC4BQ9NT99 713 aa17.23■□□□□ 0.35
CLK3-224ENST00000568605 RTF1Q92541 710 aaKnown RBP17.22■□□□□ 0.35
CLK3-224ENST00000568605 LOC102724428A0A0B4J2F2 783 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 SIK1P57059 783 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 TEFQ10587 303 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 NFATC2IPQ8NCF5 419 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 PHACTR3Q96KR7 559 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 ATG3Q9NT62 314 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 ASAP1Q9ULH1 1129 aa17.21■□□□□ 0.35
CLK3-224ENST00000568605 KCPQ6ZWJ8 1503 aa17.21■□□□□ 0.34
CLK3-224ENST00000568605 CEMIPQ8WUJ3 1361 aa17.2■□□□□ 0.34
CLK3-224ENST00000568605 ZNF827Q17R98 1081 aa17.19■□□□□ 0.34
CLK3-224ENST00000568605 LGR6Q9HBX8 967 aa17.19■□□□□ 0.34
CLK3-224ENST00000568605 HTATSF1O43719 755 aaKnown RBP17.18■□□□□ 0.34
CLK3-224ENST00000568605 ATP6V1AP38606 617 aa17.18■□□□□ 0.34
CLK3-224ENST00000568605 KCNQ4P56696 695 aa17.18■□□□□ 0.34
CLK3-224ENST00000568605 AKT1S1Q96B36 256 aa17.18■□□□□ 0.34
CLK3-224ENST00000568605 RBM42Q9BTD8 480 aaKnown RBP17.18■□□□□ 0.34
CLK3-224ENST00000568605 TFCP2L1Q9NZI6 479 aa17.18■□□□□ 0.34
CLK3-224ENST00000568605 TTC5Q8N0Z6 440 aa17.17■□□□□ 0.34
CLK3-224ENST00000568605 AK7Q96M32 723 aa17.17■□□□□ 0.34
CLK3-224ENST00000568605 PLEKHF1Q96S99 279 aa17.17■□□□□ 0.34
CLK3-224ENST00000568605 NFE2L2Q16236 605 aa17.16■□□□□ 0.34
CLK3-224ENST00000568605 IL17REQ8NFR9 667 aa17.15■□□□□ 0.34
CLK3-224ENST00000568605 LMOD3Q0VAK6 560 aa17.14■□□□□ 0.33
CLK3-224ENST00000568605 FLAD1Q8NFF5 587 aa17.14■□□□□ 0.33
CLK3-224ENST00000568605 SPON1Q9HCB6 807 aa17.14■□□□□ 0.33
CLK3-224ENST00000568605 PTCD1O75127 700 aaKnown RBP17.13■□□□□ 0.33
CLK3-224ENST00000568605 LINC00116Q8NCU8 138 aa17.13■□□□□ 0.33
CLK3-224ENST00000568605 RUNDC1Q96C34 613 aa17.13■□□□□ 0.33
CLK3-224ENST00000568605 PNPLA7Q6ZV29 1317 aa17.13■□□□□ 0.33
CLK3-224ENST00000568605 CNTNAP4Q9C0A0 1308 aa17.13■□□□□ 0.33
CLK3-224ENST00000568605 ITPK1Q13572 414 aa17.12■□□□□ 0.33
CLK3-224ENST00000568605 MCM10Q7L590 875 aa17.12■□□□□ 0.33
CLK3-224ENST00000568605 SLC16A10Q8TF71 515 aa17.12■□□□□ 0.33
CLK3-224ENST00000568605 MTFR1LQ9H019 292 aa17.12■□□□□ 0.33
CLK3-224ENST00000568605 BTBD11A6QL63 1104 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 SSFA2P28290 1259 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 SLC39A6Q13433 755 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 VSIG10Q8N0Z9 540 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 MRS2Q9HD23 443 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
CLK3-224ENST00000568605 SCN7AQ01118 1682 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 BCORQ6W2J9 1755 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 GNPATO15228 680 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 MSH5O43196 834 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 ZNF790Q6PG37 636 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
CLK3-224ENST00000568605 ZBTB7AO95365 584 aa17.09■□□□□ 0.33
CLK3-224ENST00000568605 RIPK4P57078 832 aa17.09■□□□□ 0.33
CLK3-224ENST00000568605 RC3H1Q5TC82 1133 aaKnown RBP17.09■□□□□ 0.33
CLK3-224ENST00000568605 FMNL2Q96PY5 1086 aa17.09■□□□□ 0.33
CLK3-224ENST00000568605 SLC4A9Q96Q91 983 aa17.09■□□□□ 0.33
CLK3-224ENST00000568605 HEG1Q9ULI3 1381 aa17.09■□□□□ 0.33
CLK3-224ENST00000568605 TMPOP42166 694 aaKnown RBP17.08■□□□□ 0.32
CLK3-224ENST00000568605 DCTN1Q14203 1278 aa17.08■□□□□ 0.32
CLK3-224ENST00000568605 PNISRQ8TF01 805 aaKnown RBP17.08■□□□□ 0.32
CLK3-224ENST00000568605 PDGFDQ9GZP0 370 aaPredicted RBP17.08■□□□□ 0.32
CLK3-224ENST00000568605 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
CLK3-224ENST00000568605 RTCBQ9Y3I0 505 aaKnown RBP17.08■□□□□ 0.32
CLK3-224ENST00000568605 PHF14O94880 888 aa17.07■□□□□ 0.32
CLK3-224ENST00000568605 ADRA2BP18089 450 aa17.07■□□□□ 0.32
CLK3-224ENST00000568605 TEX13AQ9BXU3 409 aaPredicted RBP17.07■□□□□ 0.32
CLK3-224ENST00000568605 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.06■□□□□ 0.32
CLK3-224ENST00000568605 POLD1P28340 1107 aa17.06■□□□□ 0.32
CLK3-224ENST00000568605 TAF7Q15545 349 aaPredicted RBP17.06■□□□□ 0.32
CLK3-224ENST00000568605 COL23A1Q86Y22 540 aaPredicted RBP17.06■□□□□ 0.32
CLK3-224ENST00000568605 CRKLP46109 303 aaKnown RBP17.05■□□□□ 0.32
CLK3-224ENST00000568605 DNAJC10Q8IXB1 793 aa17.05■□□□□ 0.32
CLK3-224ENST00000568605 ZNF496Q96IT1 587 aaPredicted RBP17.05■□□□□ 0.32
CLK3-224ENST00000568605 KIF13BQ9NQT8 1826 aa17.05■□□□□ 0.32
CLK3-224ENST00000568605 STARD3NLO95772 234 aa17.04■□□□□ 0.32
CLK3-224ENST00000568605 NEUROD2Q15784 382 aa17.04■□□□□ 0.32
CLK3-224ENST00000568605 CCDC87Q9NVE4 849 aa17.04■□□□□ 0.32
CLK3-224ENST00000568605 ATF5Q9Y2D1 282 aaPredicted RBP17.04■□□□□ 0.32
CLK3-224ENST00000568605 RPS6KA4O75676 772 aa17.03■□□□□ 0.32
CLK3-224ENST00000568605 CCDC184Q52MB2 194 aa17.03■□□□□ 0.32
CLK3-224ENST00000568605 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
CLK3-224ENST00000568605 RRP7AQ9Y3A4 280 aaKnown RBP17.03■□□□□ 0.32
CLK3-224ENST00000568605 AFDNP55196 1824 aaKnown RBP17.03■□□□□ 0.32
CLK3-224ENST00000568605 COL15A1P39059 1388 aa17.02■□□□□ 0.32
CLK3-224ENST00000568605 CYP19A1P11511 503 aaPredicted RBP17.01■□□□□ 0.31
CLK3-224ENST00000568605 THUMPD2Q9BTF0 503 aaKnown RBP17.01■□□□□ 0.31
CLK3-224ENST00000568605 BABAM1Q9NWV8 329 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms