RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ZNF831Q5JPB2 1677 aa24.3■■□□□ 1.48
CLK3-221ENST00000568139 KDRP35968 1356 aa24.29■■□□□ 1.48
CLK3-221ENST00000568139 WWC3Q9ULE0 1092 aa24.29■■□□□ 1.48
CLK3-221ENST00000568139 ERVV-2B6SEH9 535 aa24.28■■□□□ 1.48
CLK3-221ENST00000568139 TNNT2P45379 298 aaPredicted RBP24.28■■□□□ 1.48
CLK3-221ENST00000568139 CEP350Q5VT06 3117 aa24.28■■□□□ 1.48
CLK3-221ENST00000568139 MMP10P09238 476 aa24.27■■□□□ 1.48
CLK3-221ENST00000568139 SLC4A9Q96Q91 983 aa24.27■■□□□ 1.48
CLK3-221ENST00000568139 TRAPPC3LQ5T215 181 aa24.26■■□□□ 1.47
CLK3-221ENST00000568139 ZNF526Q8TF50 670 aaPredicted RBP24.26■■□□□ 1.47
CLK3-221ENST00000568139 RTCBQ9Y3I0 505 aaKnown RBP24.26■■□□□ 1.47
CLK3-221ENST00000568139 CICQ96RK0 1608 aaPredicted RBP24.25■■□□□ 1.47
CLK3-221ENST00000568139 KIAA1551Q9HCM1 1747 aa24.25■■□□□ 1.47
CLK3-221ENST00000568139 HSP90AB1P08238 724 aaKnown RBP24.25■■□□□ 1.47
CLK3-221ENST00000568139 RC3H1Q5TC82 1133 aaKnown RBP24.25■■□□□ 1.47
CLK3-221ENST00000568139 DCAF5Q96JK2 942 aa24.25■■□□□ 1.47
CLK3-221ENST00000568139 COL5A3P25940 1745 aaPredicted RBP24.24■■□□□ 1.47
CLK3-221ENST00000568139 NLGN1Q8N2Q7 840 aa24.24■■□□□ 1.47
CLK3-221ENST00000568139 POLR3GLQ9BT43 218 aa24.24■■□□□ 1.47
CLK3-221ENST00000568139 ADRA2BP18089 450 aa24.23■■□□□ 1.47
CLK3-221ENST00000568139 TGFB2P61812 414 aa24.23■■□□□ 1.47
CLK3-221ENST00000568139 PLEKHO1Q53GL0 409 aaPredicted RBP24.23■■□□□ 1.47
CLK3-221ENST00000568139 RBM42Q9BTD8 480 aaKnown RBP24.23■■□□□ 1.47
CLK3-221ENST00000568139 PXDNLA1KZ92 1463 aa24.23■■□□□ 1.47
CLK3-221ENST00000568139 N4BP2Q86UW6 1770 aaPredicted RBP24.23■■□□□ 1.47
CLK3-221ENST00000568139 CLSPNQ9HAW4 1339 aa24.22■■□□□ 1.47
CLK3-221ENST00000568139 HSPA6P17066 643 aa24.22■■□□□ 1.47
CLK3-221ENST00000568139 ARHGEF1Q92888 912 aaKnown RBP24.22■■□□□ 1.47
CLK3-221ENST00000568139 MYH14Q7Z406 1995 aaKnown RBP24.22■■□□□ 1.47
CLK3-221ENST00000568139 CNTNAP4Q9C0A0 1308 aa24.21■■□□□ 1.47
CLK3-221ENST00000568139 KDM6AO15550 1401 aaPredicted RBP24.2■■□□□ 1.46
CLK3-221ENST00000568139 RPS6KA4O75676 772 aa24.2■■□□□ 1.46
CLK3-221ENST00000568139 AMOTQ4VCS5 1084 aa24.2■■□□□ 1.46
CLK3-221ENST00000568139 PANK3Q9H999 370 aa24.2■■□□□ 1.46
CLK3-221ENST00000568139 C10orf71Q711Q0 1435 aa24.19■■□□□ 1.46
CLK3-221ENST00000568139 KIF3CO14782 793 aa24.19■■□□□ 1.46
CLK3-221ENST00000568139 GYS1P13807 737 aa24.19■■□□□ 1.46
CLK3-221ENST00000568139 ZNF530Q6P9A1 599 aaPredicted RBP24.19■■□□□ 1.46
CLK3-221ENST00000568139 CABP4P57796 275 aa24.18■■□□□ 1.46
CLK3-221ENST00000568139 IFFO2Q5TF58 517 aa24.18■■□□□ 1.46
CLK3-221ENST00000568139 C4AP0C0L4 1744 aa24.18■■□□□ 1.46
CLK3-221ENST00000568139 A0A0G2JLW4 131 aa24.17■■□□□ 1.46
CLK3-221ENST00000568139 RFC4P35249 363 aa24.17■■□□□ 1.46
CLK3-221ENST00000568139 BRCA1P38398 1863 aaKnown RBP24.16■■□□□ 1.46
CLK3-221ENST00000568139 EIF4G2P78344 907 aaKnown RBP eCLIP24.16■■□□□ 1.46
CLK3-221ENST00000568139 CCDC87Q9NVE4 849 aa24.16■■□□□ 1.46
CLK3-221ENST00000568139 BCS1LQ9Y276 419 aa24.16■■□□□ 1.46
CLK3-221ENST00000568139 MTHFSP49914 203 aa24.15■■□□□ 1.46
CLK3-221ENST00000568139 HSPA5P11021 654 aaKnown RBP24.14■■□□□ 1.45
CLK3-221ENST00000568139 PARP3Q9Y6F1 533 aa24.14■■□□□ 1.45
CLK3-221ENST00000568139 DPEP1P16444 411 aa24.13■■□□□ 1.45
CLK3-221ENST00000568139 AEBP1Q8IUX7 1158 aa24.13■■□□□ 1.45
CLK3-221ENST00000568139 C1orf141Q5JVX7 400 aa24.12■■□□□ 1.45
CLK3-221ENST00000568139 MORC1Q86VD1 984 aa24.12■■□□□ 1.45
CLK3-221ENST00000568139 NFATC2IPQ8NCF5 419 aa24.12■■□□□ 1.45
CLK3-221ENST00000568139 PTCD1O75127 700 aaKnown RBP24.11■■□□□ 1.45
CLK3-221ENST00000568139 KCNA3P22001 575 aa24.11■■□□□ 1.45
CLK3-221ENST00000568139 CRKLP46109 303 aaKnown RBP24.11■■□□□ 1.45
CLK3-221ENST00000568139 ARFGEF1Q9Y6D6 1849 aa24.1■■□□□ 1.45
CLK3-221ENST00000568139 ARHGAP27Q6ZUM4 889 aa24.1■■□□□ 1.45
CLK3-221ENST00000568139 SCN11AQ9UI33 1791 aa24.1■■□□□ 1.45
CLK3-221ENST00000568139 FCHSD2O94868 740 aa24.09■■□□□ 1.45
CLK3-221ENST00000568139 SULT6B1Q6IMI4 303 aa24.09■■□□□ 1.45
CLK3-221ENST00000568139 TJP1Q07157 1748 aa24.09■■□□□ 1.45
CLK3-221ENST00000568139 PCGF6Q9BYE7 350 aa24.08■■□□□ 1.45
CLK3-221ENST00000568139 IL13P35225 146 aa24.07■■□□□ 1.44
CLK3-221ENST00000568139 USP42Q9H9J4 1324 aaKnown RBP24.07■■□□□ 1.44
CLK3-221ENST00000568139 TOMM70O94826 608 aa24.06■■□□□ 1.44
CLK3-221ENST00000568139 FKBP8Q14318 412 aa24.06■■□□□ 1.44
CLK3-221ENST00000568139 SRP68Q9UHB9 627 aaKnown RBP24.06■■□□□ 1.44
CLK3-221ENST00000568139 PIM2Q9P1W9 311 aa24.05■■□□□ 1.44
CLK3-221ENST00000568139 ADAMTS7Q9UKP4 1686 aa24.05■■□□□ 1.44
CLK3-221ENST00000568139 DDR1Q08345 913 aa24.04■■□□□ 1.44
CLK3-221ENST00000568139 INTS5Q6P9B9 1019 aaKnown RBP24.04■■□□□ 1.44
CLK3-221ENST00000568139 KNSTRNQ9Y448 316 aa24.04■■□□□ 1.44
CLK3-221ENST00000568139 APLP1P51693 650 aa24.03■■□□□ 1.44
CLK3-221ENST00000568139 AKAP4Q5JQC9 854 aa24.03■■□□□ 1.44
CLK3-221ENST00000568139 C9orf131Q5VYM1 1079 aa24.02■■□□□ 1.44
CLK3-221ENST00000568139 NMRK2Q9NPI5 230 aa24.02■■□□□ 1.44
CLK3-221ENST00000568139 TM4SF1P30408 202 aa24.01■■□□□ 1.43
CLK3-221ENST00000568139 SLC52A2Q9HAB3 445 aa24.01■■□□□ 1.43
CLK3-221ENST00000568139 DALRD3Q5D0E6 543 aaKnown RBP24■■□□□ 1.43
CLK3-221ENST00000568139 VIRMAQ69YN4 1812 aaKnown RBP24■■□□□ 1.43
CLK3-221ENST00000568139 POLRMTO00411 1230 aaKnown RBP23.99■■□□□ 1.43
CLK3-221ENST00000568139 AMER1Q5JTC6 1135 aaPredicted RBP23.99■■□□□ 1.43
CLK3-221ENST00000568139 DNAJC10Q8IXB1 793 aa23.99■■□□□ 1.43
CLK3-221ENST00000568139 LGR6Q9HBX8 967 aa23.99■■□□□ 1.43
CLK3-221ENST00000568139 SBF1O95248 1867 aa23.98■■□□□ 1.43
CLK3-221ENST00000568139 DNAJC5GQ8N7S2 189 aa23.98■■□□□ 1.43
CLK3-221ENST00000568139 RNMTO43148 476 aaKnown RBP23.97■■□□□ 1.43
CLK3-221ENST00000568139 MRC1P22897 1456 aa23.97■■□□□ 1.43
CLK3-221ENST00000568139 CHRNA5P30532 468 aa23.97■■□□□ 1.43
CLK3-221ENST00000568139 SOS1Q07889 1333 aaPredicted RBP23.97■■□□□ 1.43
CLK3-221ENST00000568139 ZPR1O75312 459 aa23.96■■□□□ 1.43
CLK3-221ENST00000568139 CYP19A1P11511 503 aaPredicted RBP23.96■■□□□ 1.43
CLK3-221ENST00000568139 USPL1Q5W0Q7 1092 aa23.96■■□□□ 1.43
CLK3-221ENST00000568139 RBM46Q8TBY0 533 aaKnown RBP23.96■■□□□ 1.43
CLK3-221ENST00000568139 AFDNP55196 1824 aaKnown RBP23.95■■□□□ 1.42
CLK3-221ENST00000568139 SLC39A6Q13433 755 aa23.94■■□□□ 1.42
CLK3-221ENST00000568139 RNF181Q9P0P0 153 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms