RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 EXOC5O00471 708 aa39.42■■■■□ 3.9
CTCF-203ENST00000566078 NKX1-1Q15270 411 aaPredicted RBP39.42■■■■□ 3.9
CTCF-203ENST00000566078 SLC52A2Q9HAB3 445 aa39.42■■■■□ 3.9
CTCF-203ENST00000566078 GLI3P10071 1580 aa39.42■■■■□ 3.9
CTCF-203ENST00000566078 BTBD11A6QL63 1104 aa39.41■■■■□ 3.9
CTCF-203ENST00000566078 ELL2O00472 640 aaPredicted RBP39.41■■■■□ 3.9
CTCF-203ENST00000566078 KRT24Q2M2I5 525 aa39.4■■■■□ 3.9
CTCF-203ENST00000566078 VAMP4O75379 141 aa39.4■■■■□ 3.9
CTCF-203ENST00000566078 THSD7AQ9UPZ6 1657 aa39.39■■■■□ 3.9
CTCF-203ENST00000566078 FBXO41Q8TF61 875 aa39.39■■■■□ 3.9
CTCF-203ENST00000566078 BCL2L13Q9BXK5 485 aa39.39■■■■□ 3.9
CTCF-203ENST00000566078 DOT1LQ8TEK3 1739 aa39.38■■■■□ 3.9
CTCF-203ENST00000566078 PLIN1O60240 522 aa39.37■■■■□ 3.89
CTCF-203ENST00000566078 DDB1Q16531 1140 aa39.37■■■■□ 3.89
CTCF-203ENST00000566078 ZNF428Q96B54 188 aa39.37■■■■□ 3.89
CTCF-203ENST00000566078 ATRNO75882 1429 aa39.37■■■■□ 3.89
CTCF-203ENST00000566078 FAM98CQ17RN3 349 aaKnown RBP39.36■■■■□ 3.89
CTCF-203ENST00000566078 KAT6BQ8WYB5 2073 aa39.36■■■■□ 3.89
CTCF-203ENST00000566078 PAPPAQ13219 1627 aa39.36■■■■□ 3.89
CTCF-203ENST00000566078 GOLGA6L2Q8N9W4 650 aaPredicted RBP39.36■■■■□ 3.89
CTCF-203ENST00000566078 NFATC2IPQ8NCF5 419 aa39.35■■■■□ 3.89
CTCF-203ENST00000566078 SMC4Q9NTJ3 1288 aa39.35■■■■□ 3.89
CTCF-203ENST00000566078 SSH1Q8WYL5 1049 aa39.34■■■■□ 3.89
CTCF-203ENST00000566078 CABP4P57796 275 aa39.33■■■■□ 3.89
CTCF-203ENST00000566078 ALDH1L2Q3SY69 923 aa39.32■■■■□ 3.89
CTCF-203ENST00000566078 ERVV-2B6SEH9 535 aa39.32■■■■□ 3.88
CTCF-203ENST00000566078 CACNA1FO60840 1977 aa39.31■■■■□ 3.88
CTCF-203ENST00000566078 UBR2Q8IWV8 1755 aa39.31■■■■□ 3.88
CTCF-203ENST00000566078 KCNQ3O43525 872 aa39.31■■■■□ 3.88
CTCF-203ENST00000566078 TRPC5Q9UL62 973 aaPredicted RBP39.3■■■■□ 3.88
CTCF-203ENST00000566078 C5P01031 1676 aa39.29■■■■□ 3.88
CTCF-203ENST00000566078 EIF4A1P60842 406 aaKnown RBP39.29■■■■□ 3.88
CTCF-203ENST00000566078 CANXP27824 592 aaKnown RBP39.28■■■■□ 3.88
CTCF-203ENST00000566078 GJD4Q96KN9 370 aaPredicted RBP39.28■■■■□ 3.88
CTCF-203ENST00000566078 FRAT1Q92837 279 aaPredicted RBP39.26■■■■□ 3.88
CTCF-203ENST00000566078 SOS1Q07889 1333 aaPredicted RBP39.25■■■■□ 3.87
CTCF-203ENST00000566078 SLC39A6Q13433 755 aa39.24■■■■□ 3.87
CTCF-203ENST00000566078 A0A0G2JS52 829 aa39.23■■■■□ 3.87
CTCF-203ENST00000566078 MYT1Q01538 1121 aa39.23■■■■□ 3.87
CTCF-203ENST00000566078 ZNF790Q6PG37 636 aa39.23■■■■□ 3.87
CTCF-203ENST00000566078 TCERG1O14776 1098 aaKnown RBP39.22■■■■□ 3.87
CTCF-203ENST00000566078 LAMB4A4D0S4 1761 aa39.21■■■■□ 3.87
CTCF-203ENST00000566078 KIF16BQ96L93 1317 aa39.21■■■■□ 3.87
CTCF-203ENST00000566078 MRPL50Q8N5N7 158 aaKnown RBP39.21■■■■□ 3.87
CTCF-203ENST00000566078 MARCH10Q8NA82 808 aaPredicted RBP39.21■■■■□ 3.87
CTCF-203ENST00000566078 C20orf194Q5TEA3 1177 aa39.2■■■■□ 3.87
CTCF-203ENST00000566078 TTC5Q8N0Z6 440 aa39.19■■■■□ 3.86
CTCF-203ENST00000566078 QTRT2Q9H974 415 aaKnown RBP39.19■■■■□ 3.86
CTCF-203ENST00000566078 TMOD3Q9NYL9 352 aa39.19■■■■□ 3.86
CTCF-203ENST00000566078 HEG1Q9ULI3 1381 aa39.19■■■■□ 3.86
CTCF-203ENST00000566078 BRPF1P55201 1214 aaPredicted RBP39.18■■■■□ 3.86
CTCF-203ENST00000566078 HOXB7P09629 217 aa39.17■■■■□ 3.86
CTCF-203ENST00000566078 ZKSCAN2Q63HK3 967 aa39.15■■■■□ 3.86
CTCF-203ENST00000566078 NOB1Q9ULX3 412 aaKnown RBP39.15■■■■□ 3.86
CTCF-203ENST00000566078 KCPQ6ZWJ8 1503 aa39.15■■■■□ 3.86
CTCF-203ENST00000566078 ERICH6BQ5W0A0 696 aa39.13■■■■□ 3.85
CTCF-203ENST00000566078 BRWD3Q6RI45 1802 aa39.12■■■■□ 3.85
CTCF-203ENST00000566078 HDGFL1Q5TGJ6 251 aa39.12■■■■□ 3.85
CTCF-203ENST00000566078 CCDC30Q5VVM6 783 aa39.12■■■■□ 3.85
CTCF-203ENST00000566078 BCL9O00512 1426 aa39.12■■■■□ 3.85
CTCF-203ENST00000566078 GIGYF1O75420 1035 aaPredicted RBP39.11■■■■□ 3.85
CTCF-203ENST00000566078 NECTIN2Q92692 538 aa39.11■■■■□ 3.85
CTCF-203ENST00000566078 PDE3AQ14432 1141 aa39.11■■■■□ 3.85
CTCF-203ENST00000566078 ZNF496Q96IT1 587 aaPredicted RBP39.11■■■■□ 3.85
CTCF-203ENST00000566078 PIGBQ92521 554 aa39.1■■■■□ 3.85
CTCF-203ENST00000566078 FMNL2Q96PY5 1086 aa39.1■■■■□ 3.85
CTCF-203ENST00000566078 CRBNQ96SW2 442 aa39.1■■■■□ 3.85
CTCF-203ENST00000566078 STK31Q9BXU1 1019 aa39.1■■■■□ 3.85
CTCF-203ENST00000566078 TNNQ9UQP3 1299 aa39.1■■■■□ 3.85
CTCF-203ENST00000566078 IPO8O15397 1037 aaKnown RBP39.09■■■■□ 3.85
CTCF-203ENST00000566078 ZNF772Q68DY9 489 aaPredicted RBP39.09■■■■□ 3.85
CTCF-203ENST00000566078 ONECUT3O60422 494 aaPredicted RBP39.08■■■■□ 3.85
CTCF-203ENST00000566078 SYTL4Q96C24 671 aaPredicted RBP39.08■■■■□ 3.85
CTCF-203ENST00000566078 ATF7IPQ6VMQ6 1270 aa39.07■■■■□ 3.85
CTCF-203ENST00000566078 EXOC6Q8TAG9 804 aa39.07■■■■□ 3.85
CTCF-203ENST00000566078 EIF2S2P20042 333 aaKnown RBP39.07■■■■□ 3.84
CTCF-203ENST00000566078 PANK1Q8TE04 598 aa39.07■■■■□ 3.84
CTCF-203ENST00000566078 SBF2Q86WG5 1849 aa39.06■■■■□ 3.84
CTCF-203ENST00000566078 PRAMEF22A3QJZ6 481 aa39.06■■■■□ 3.84
CTCF-203ENST00000566078 SLC4A2P04920 1241 aa39.06■■■■□ 3.84
CTCF-203ENST00000566078 TRIM27P14373 513 aa39.06■■■■□ 3.84
CTCF-203ENST00000566078 CHMP4AQ9BY43 222 aa39.06■■■■□ 3.84
CTCF-203ENST00000566078 PRIM1P49642 420 aaKnown RBP39.05■■■■□ 3.84
CTCF-203ENST00000566078 CLUAP1Q96AJ1 413 aa39.04■■■■□ 3.84
CTCF-203ENST00000566078 ACSBG1Q96GR2 724 aa39.04■■■■□ 3.84
CTCF-203ENST00000566078 NHSQ6T4R5 1651 aa39.04■■■■□ 3.84
CTCF-203ENST00000566078 MS4A1P11836 297 aa39.03■■■■□ 3.84
CTCF-203ENST00000566078 FTSJ3Q8IY81 847 aaKnown RBP39.03■■■■□ 3.84
CTCF-203ENST00000566078 SEPT12Q8IYM1 358 aa39.03■■■■□ 3.84
CTCF-203ENST00000566078 ARHGAP45Q92619 1136 aa39.03■■■■□ 3.84
CTCF-203ENST00000566078 DZIP1LQ8IYY4 767 aaKnown RBP39.02■■■■□ 3.84
CTCF-203ENST00000566078 SNRPA1P09661 255 aaKnown RBP39.01■■■■□ 3.84
CTCF-203ENST00000566078 RLBP1P12271 317 aa39.01■■■■□ 3.84
CTCF-203ENST00000566078 ASAP1Q9ULH1 1129 aa39■■■■□ 3.83
CTCF-203ENST00000566078 ATG3Q9NT62 314 aa39■■■■□ 3.83
CTCF-203ENST00000566078 CHPF2Q9P2E5 772 aa38.98■■■■□ 3.83
CTCF-203ENST00000566078 PTPRCP08575 1304 aa38.97■■■■□ 3.83
CTCF-203ENST00000566078 PTCD1O75127 700 aaKnown RBP38.97■■■■□ 3.83
CTCF-203ENST00000566078 COG6Q9Y2V7 657 aa38.97■■■■□ 3.83
CTCF-203ENST00000566078 BTAF1O14981 1849 aa38.97■■■■□ 3.83
Retrieved 100 of 20,778 RNA–protein pairs in 181.1 ms