RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	ERVV-2	B6SEH9	535 aa		28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	KNSTRN	Q9Y448	316 aa		28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	CD2AP	Q9Y5K6	639 aa		28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	KDR	P35968	1356 aa		28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	KDM6A	O15550	1401 aa	Predicted RBP	28.69	■■■□□ 2.18
CHD9-208	ENST00000563410	AEBP1	Q8IUX7	1158 aa		28.68	■■■□□ 2.18
CHD9-208	ENST00000563410	DCAF5	Q96JK2	942 aa		28.68	■■■□□ 2.18
CHD9-208	ENST00000563410	COL5A3	P25940	1745 aa	Predicted RBP	28.68	■■■□□ 2.18
CHD9-208	ENST00000563410	HSP90AB1	P08238	724 aa	Known RBP	28.66	■■■□□ 2.18
CHD9-208	ENST00000563410	AMOT	Q4VCS5	1084 aa		28.66	■■■□□ 2.18
CHD9-208	ENST00000563410	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.66	■■■□□ 2.18
CHD9-208	ENST00000563410	SLC4A9	Q96Q91	983 aa		28.66	■■■□□ 2.18
CHD9-208	ENST00000563410	GNPAT	O15228	680 aa		28.65	■■■□□ 2.18
CHD9-208	ENST00000563410	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.65	■■■□□ 2.18
CHD9-208	ENST00000563410	KIF7	Q2M1P5	1343 aa		28.65	■■■□□ 2.18
CHD9-208	ENST00000563410	GRIN3B	O60391	1043 aa		28.64	■■■□□ 2.18
CHD9-208	ENST00000563410	MYH14	Q7Z406	1995 aa	Known RBP	28.64	■■■□□ 2.17
CHD9-208	ENST00000563410	IL13	P35225	146 aa		28.63	■■■□□ 2.17
CHD9-208	ENST00000563410	SCN11A	Q9UI33	1791 aa		28.62	■■■□□ 2.17
CHD9-208	ENST00000563410	SULT6B1	Q6IMI4	303 aa		28.61	■■■□□ 2.17
CHD9-208	ENST00000563410	RBM42	Q9BTD8	480 aa	Known RBP	28.61	■■■□□ 2.17
CHD9-208	ENST00000563410	VIRMA	Q69YN4	1812 aa	Known RBP	28.59	■■■□□ 2.17
CHD9-208	ENST00000563410	MTHFS	P49914	203 aa		28.58	■■■□□ 2.17
CHD9-208	ENST00000563410	CABP4	P57796	275 aa		28.58	■■■□□ 2.17
CHD9-208	ENST00000563410	KIF13B	Q9NQT8	1826 aa		28.57	■■■□□ 2.16
CHD9-208	ENST00000563410	C1orf141	Q5JVX7	400 aa		28.57	■■■□□ 2.16
CHD9-208	ENST00000563410	PER1	O15534	1290 aa	Predicted RBP	28.56	■■■□□ 2.16
CHD9-208	ENST00000563410	RC3H1	Q5TC82	1133 aa	Known RBP	28.56	■■■□□ 2.16
CHD9-208	ENST00000563410	RTCB	Q9Y3I0	505 aa	Known RBP	28.56	■■■□□ 2.16
CHD9-208	ENST00000563410	C4A	P0C0L4	1744 aa		28.55	■■■□□ 2.16
CHD9-208	ENST00000563410	CNTNAP4	Q9C0A0	1308 aa		28.54	■■■□□ 2.16
CHD9-208	ENST00000563410	TRAPPC3L	Q5T215	181 aa		28.54	■■■□□ 2.16
CHD9-208	ENST00000563410	NFATC2IP	Q8NCF5	419 aa		28.54	■■■□□ 2.16
CHD9-208	ENST00000563410	TJP1	Q07157	1748 aa		28.54	■■■□□ 2.16
CHD9-208	ENST00000563410	KIAA1551	Q9HCM1	1747 aa		28.54	■■■□□ 2.16
CHD9-208	ENST00000563410	C1QTNF8	P60827	252 aa		28.53	■■■□□ 2.16
CHD9-208	ENST00000563410	CIC	Q96RK0	1608 aa	Predicted RBP	28.53	■■■□□ 2.16
CHD9-208	ENST00000563410	MMP10	P09238	476 aa		28.52	■■■□□ 2.16
CHD9-208	ENST00000563410	ARHGEF1	Q92888	912 aa	Known RBP	28.52	■■■□□ 2.16
CHD9-208	ENST00000563410	RPS6KA4	O75676	772 aa		28.51	■■■□□ 2.15
CHD9-208	ENST00000563410	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.5	■■■□□ 2.15
CHD9-208	ENST00000563410	PTCD1	O75127	700 aa	Known RBP	28.5	■■■□□ 2.15
CHD9-208	ENST00000563410	ADRA2B	P18089	450 aa		28.5	■■■□□ 2.15
CHD9-208	ENST00000563410	WWC3	Q9ULE0	1092 aa		28.49	■■■□□ 2.15
CHD9-208	ENST00000563410	AKAP4	Q5JQC9	854 aa		28.48	■■■□□ 2.15
CHD9-208	ENST00000563410	NLGN1	Q8N2Q7	840 aa		28.48	■■■□□ 2.15
CHD9-208	ENST00000563410	GIGYF1	O75420	1035 aa	Predicted RBP	28.47	■■■□□ 2.15
CHD9-208	ENST00000563410	GYS1	P13807	737 aa		28.47	■■■□□ 2.15
CHD9-208	ENST00000563410	HMOX1	P09601	288 aa		28.46	■■■□□ 2.15
CHD9-208	ENST00000563410	CC2D1B	Q5T0F9	858 aa	Known RBP	28.46	■■■□□ 2.15
CHD9-208	ENST00000563410	ADAMTS7	Q9UKP4	1686 aa		28.45	■■■□□ 2.15
CHD9-208	ENST00000563410	ATP10D	Q9P241	1426 aa		28.45	■■■□□ 2.15
CHD9-208	ENST00000563410	CRKL	P46109	303 aa	Known RBP	28.45	■■■□□ 2.14
CHD9-208	ENST00000563410	LGR6	Q9HBX8	967 aa		28.45	■■■□□ 2.14
CHD9-208	ENST00000563410	ADCY9	O60503	1353 aa		28.45	■■■□□ 2.14
CHD9-208	ENST00000563410	PXDNL	A1KZ92	1463 aa		28.45	■■■□□ 2.14
CHD9-208	ENST00000563410	MRC1	P22897	1456 aa		28.45	■■■□□ 2.14
CHD9-208	ENST00000563410	RFC4	P35249	363 aa		28.44	■■■□□ 2.14
CHD9-208	ENST00000563410	C10orf71	Q711Q0	1435 aa		28.43	■■■□□ 2.14
CHD9-208	ENST00000563410	SLC52A2	Q9HAB3	445 aa		28.43	■■■□□ 2.14
CHD9-208	ENST00000563410	BRCA1	P38398	1863 aa	Known RBP	28.42	■■■□□ 2.14
CHD9-208	ENST00000563410	SENP3-EIF4A1	A0A087X0R7	540 aa		28.41	■■■□□ 2.14
CHD9-208	ENST00000563410	RNMT	O43148	476 aa	Known RBP	28.41	■■■□□ 2.14
CHD9-208	ENST00000563410	DIAPH1	O60610	1272 aa	Known RBP	28.41	■■■□□ 2.14
CHD9-208	ENST00000563410	COL3A1	P02461	1466 aa	Predicted RBP	28.4	■■■□□ 2.14
CHD9-208	ENST00000563410	NPC1L1	Q9UHC9	1359 aa		28.4	■■■□□ 2.14
CHD9-208	ENST00000563410	TGFB2	P61812	414 aa		28.39	■■■□□ 2.14
CHD9-208	ENST00000563410	MTHFSD	Q2M296	383 aa	Known RBP	28.39	■■■□□ 2.14
CHD9-208	ENST00000563410	INTS5	Q6P9B9	1019 aa	Known RBP	28.38	■■■□□ 2.13
CHD9-208	ENST00000563410	SRP68	Q9UHB9	627 aa	Known RBP	28.38	■■■□□ 2.13
CHD9-208	ENST00000563410	CCDC87	Q9NVE4	849 aa		28.37	■■■□□ 2.13
CHD9-208	ENST00000563410	KCP	Q6ZWJ8	1503 aa		28.37	■■■□□ 2.13
CHD9-208	ENST00000563410	USP42	Q9H9J4	1324 aa	Known RBP	28.37	■■■□□ 2.13
CHD9-208	ENST00000563410		A0A0G2JLW4	131 aa		28.36	■■■□□ 2.13
CHD9-208	ENST00000563410	SLC39A6	Q13433	755 aa		28.36	■■■□□ 2.13
CHD9-208	ENST00000563410	DNAJC10	Q8IXB1	793 aa		28.36	■■■□□ 2.13
CHD9-208	ENST00000563410	PARP3	Q9Y6F1	533 aa		28.36	■■■□□ 2.13
CHD9-208	ENST00000563410	UBR2	Q8IWV8	1755 aa		28.36	■■■□□ 2.13
CHD9-208	ENST00000563410	FKBP8	Q14318	412 aa		28.33	■■■□□ 2.13
CHD9-208	ENST00000563410	ARFGEF1	Q9Y6D6	1849 aa		28.32	■■■□□ 2.12
CHD9-208	ENST00000563410	DPEP1	P16444	411 aa		28.32	■■■□□ 2.12
CHD9-208	ENST00000563410	CNGB1	Q14028	1251 aa	Predicted RBP	28.32	■■■□□ 2.12
CHD9-208	ENST00000563410	GPBP1L1	Q9HC44	474 aa	Predicted RBP	28.32	■■■□□ 2.12
CHD9-208	ENST00000563410	CYP19A1	P11511	503 aa	Predicted RBP	28.31	■■■□□ 2.12
CHD9-208	ENST00000563410	DDR1	Q08345	913 aa		28.31	■■■□□ 2.12
CHD9-208	ENST00000563410	BCS1L	Q9Y276	419 aa		28.31	■■■□□ 2.12
CHD9-208	ENST00000563410	SIPA1L3	O60292	1781 aa	Predicted RBP	28.3	■■■□□ 2.12
CHD9-208	ENST00000563410	SOS1	Q07889	1333 aa	Predicted RBP	28.3	■■■□□ 2.12
CHD9-208	ENST00000563410	KCNA3	P22001	575 aa		28.29	■■■□□ 2.12
CHD9-208	ENST00000563410	ZNF526	Q8TF50	670 aa	Predicted RBP	28.29	■■■□□ 2.12
CHD9-208	ENST00000563410	AFDN	P55196	1824 aa	Known RBP	28.29	■■■□□ 2.12
CHD9-208	ENST00000563410	U2SURP	O15042	1029 aa	Known RBP	28.27	■■■□□ 2.12
CHD9-208	ENST00000563410	TM4SF1	P30408	202 aa		28.26	■■■□□ 2.11
CHD9-208	ENST00000563410	USPL1	Q5W0Q7	1092 aa		28.26	■■■□□ 2.11
CHD9-208	ENST00000563410	VSIG10	Q8N0Z9	540 aa		28.26	■■■□□ 2.11
CHD9-208	ENST00000563410	ZBTB1	Q9Y2K1	713 aa		28.26	■■■□□ 2.11
CHD9-208	ENST00000563410	CEP350	Q5VT06	3117 aa		28.26	■■■□□ 2.11
CHD9-208	ENST00000563410	POLRMT	O00411	1230 aa	Known RBP	28.25	■■■□□ 2.11
CHD9-208	ENST00000563410	ZPR1	O75312	459 aa		28.24	■■■□□ 2.11

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms