RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 PRPF40AO75400 957 aaKnown RBP17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 LRSAM1Q6UWE0 723 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 C14orf37Q86TY3 774 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 MPNDQ8N594 471 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 GPT2Q8TD30 523 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 BCL2L12Q9HB09 334 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 MBIPQ9NS73 344 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 ATF7IPQ6VMQ6 1270 aa17.11■□□□□ 0.33
GTF3C1-203ENST00000562609 MAP3K19Q56UN5 1328 aa17.1■□□□□ 0.33
GTF3C1-203ENST00000562609 U2AF2P26368 475 aaKnown RBP eCLIP17.1■□□□□ 0.33
GTF3C1-203ENST00000562609 NLRP6P59044 892 aa17.1■□□□□ 0.33
GTF3C1-203ENST00000562609 TMEM57Q8N5G2 664 aa17.1■□□□□ 0.33
GTF3C1-203ENST00000562609 RIMS1Q86UR5 1692 aaKnown RBP17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 OVOS2A0A0J9YW53 1432 aa17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 OVOS2Q6IE36 1432 aa17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 HDAC1Q13547 482 aaPredicted RBP17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 MCM10Q7L590 875 aa17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 KIF16BQ96L93 1317 aa17.09■□□□□ 0.33
GTF3C1-203ENST00000562609 AK9Q5TCS8 1911 aa17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 CT47B1P0C2W7 299 aaPredicted RBP17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 NOLC1Q14978 699 aaKnown RBP eCLIP17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 KRT24Q2M2I5 525 aa17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 AEBP2Q6ZN18 517 aaPredicted RBP17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 PAXIP1Q6ZW49 1069 aaPredicted RBP17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 TMEM63CQ9P1W3 806 aa17.08■□□□□ 0.33
GTF3C1-203ENST00000562609 NUCB2P80303 420 aa17.08■□□□□ 0.32
GTF3C1-203ENST00000562609 PKP1Q13835 747 aa17.08■□□□□ 0.32
GTF3C1-203ENST00000562609 ANKLE2Q86XL3 938 aa17.08■□□□□ 0.32
GTF3C1-203ENST00000562609 C8orf58Q8NAV2 365 aa17.08■□□□□ 0.32
GTF3C1-203ENST00000562609 DIP2AQ14689 1571 aa17.08■□□□□ 0.32
GTF3C1-203ENST00000562609 TOPAZ1Q8N9V7 1692 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 FOXO3O43524 673 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 CEP170BQ9Y4F5 1589 aaPredicted RBP17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 VAMP4O75379 141 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 PIBF1Q8WXW3 757 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 LNPKQ9C0E8 428 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 DLG5Q8TDM6 1919 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 PTCH1Q13635 1447 aa17.07■□□□□ 0.32
GTF3C1-203ENST00000562609 AMPHP49418 695 aa17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 MAPK8IP2Q13387 824 aaPredicted RBP17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 C17orf53Q8N3J3 647 aaPredicted RBP17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 NRKQ7Z2Y5 1582 aa17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 GNAI1P63096 354 aa17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 LTV1Q96GA3 475 aaPredicted RBP17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 ABTB2Q8N961 1025 aa17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 MIS18AQ9NYP9 233 aa17.06■□□□□ 0.32
GTF3C1-203ENST00000562609 SSH2Q76I76 1423 aa17.05■□□□□ 0.32
GTF3C1-203ENST00000562609 PEAK1Q9H792 1746 aa17.05■□□□□ 0.32
GTF3C1-203ENST00000562609 CYP2E1P05181 493 aaPredicted RBP17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 TWISTNBQ3B726 338 aaPredicted RBP17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 IFT57Q9NWB7 429 aa17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 NSFL1CQ9UNZ2 370 aaKnown RBP17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 IRX5P78411 483 aaPredicted RBP17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 CFAP44Q96MT7 982 aa17.04■□□□□ 0.32
GTF3C1-203ENST00000562609 ZNF853P0CG23 659 aa17.03■□□□□ 0.32
GTF3C1-203ENST00000562609 KCNJ4P48050 445 aa17.03■□□□□ 0.32
GTF3C1-203ENST00000562609 CHAMP1Q96JM3 812 aa17.03■□□□□ 0.32
GTF3C1-203ENST00000562609 DDX19BQ9UMR2 479 aa17.02■□□□□ 0.32
GTF3C1-203ENST00000562609 TTC21AQ8NDW8 1320 aa17.02■□□□□ 0.32
GTF3C1-203ENST00000562609 BMP2KLQ5H9B9 411 aa17.02■□□□□ 0.32
GTF3C1-203ENST00000562609 C1orf115Q9H7X2 142 aa17.02■□□□□ 0.32
GTF3C1-203ENST00000562609 TTC12Q9H892 705 aaPredicted RBP17.02■□□□□ 0.32
GTF3C1-203ENST00000562609 USP31Q70CQ4 1352 aa17.02■□□□□ 0.31
GTF3C1-203ENST00000562609 IPO8O15397 1037 aaKnown RBP17.02■□□□□ 0.31
GTF3C1-203ENST00000562609 NUCB1Q02818 461 aa17.02■□□□□ 0.31
GTF3C1-203ENST00000562609 TBC1D9Q6ZT07 1266 aa17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 EYA1Q99502 592 aa17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 LMOD3Q0VAK6 560 aa17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 FKBP5Q13451 457 aaPredicted RBP17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 ALDH1L2Q3SY69 923 aa17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 MRPL50Q8N5N7 158 aaKnown RBP17.01■□□□□ 0.31
GTF3C1-203ENST00000562609 XRN1Q8IZH2 1706 aaKnown RBP17■□□□□ 0.31
GTF3C1-203ENST00000562609 MTHFSDQ2M296 383 aaKnown RBP17■□□□□ 0.31
GTF3C1-203ENST00000562609 SETD1BQ9UPS6 1966 aaKnown RBP17■□□□□ 0.31
GTF3C1-203ENST00000562609 CHD1LQ86WJ1 897 aa16.99■□□□□ 0.31
GTF3C1-203ENST00000562609 ANKRD7Q92527 254 aa16.99■□□□□ 0.31
GTF3C1-203ENST00000562609 FEZ1Q99689 392 aa16.99■□□□□ 0.31
GTF3C1-203ENST00000562609 TSPY26PQ9H489 355 aa16.99■□□□□ 0.31
GTF3C1-203ENST00000562609 PHF8Q9UPP1 1060 aa16.99■□□□□ 0.31
GTF3C1-203ENST00000562609 USHBP1Q8N6Y0 703 aa16.98■□□□□ 0.31
GTF3C1-203ENST00000562609 ZBTB40Q9NUA8 1239 aa16.98■□□□□ 0.31
GTF3C1-203ENST00000562609 OGFRQ9NZT2 677 aa16.98■□□□□ 0.31
GTF3C1-203ENST00000562609 RIOK3O14730 519 aaKnown RBP16.98■□□□□ 0.31
GTF3C1-203ENST00000562609 FLT4P35916 1363 aa16.98■□□□□ 0.31
GTF3C1-203ENST00000562609 PIK3C2AO00443 1686 aa16.97■□□□□ 0.31
GTF3C1-203ENST00000562609 SPTLC3Q9NUV7 552 aa16.97■□□□□ 0.31
GTF3C1-203ENST00000562609 LMOD2Q6P5Q4 547 aa16.97■□□□□ 0.31
GTF3C1-203ENST00000562609 NALCNQ8IZF0 1738 aa16.96■□□□□ 0.31
GTF3C1-203ENST00000562609 SBNO1A3KN83 1393 aa16.96■□□□□ 0.31
GTF3C1-203ENST00000562609 ZGPATQ8N5A5 531 aaKnown RBP16.96■□□□□ 0.31
GTF3C1-203ENST00000562609 ORAI2Q96SN7 254 aa16.96■□□□□ 0.31
GTF3C1-203ENST00000562609 ZDHHC9Q9Y397 364 aa16.96■□□□□ 0.31
GTF3C1-203ENST00000562609 HOXC9P31274 260 aa16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 PSME1Q06323 249 aa16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 GABPB1Q06547 395 aaPredicted RBP16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 CHAF1AQ13111 956 aaPredicted RBP16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 FOXD4L5Q5VV16 416 aaPredicted RBP16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 FOXD4L4Q8WXT5 416 aaPredicted RBP16.96■□□□□ 0.3
GTF3C1-203ENST00000562609 DIAPH3Q9NSV4 1193 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms