RNA–Protein interactions for RNA: ENST00000561278.1

SHF-211, Transcript of Src homology 2 domain containing F, humanhuman

TSL 4

Gene SHF, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-211ENST00000561278 ATP6V1AP38606 617 aa16.97■□□□□ 0.31
SHF-211ENST00000561278 MTHFSP49914 203 aa16.97■□□□□ 0.31
SHF-211ENST00000561278 LINC00116Q8NCU8 138 aa16.97■□□□□ 0.31
SHF-211ENST00000561278 KDM6AO15550 1401 aaPredicted RBP16.96■□□□□ 0.31
SHF-211ENST00000561278 CABP4P57796 275 aa16.96■□□□□ 0.31
SHF-211ENST00000561278 GPR162Q16538 588 aa16.96■□□□□ 0.31
SHF-211ENST00000561278 ATG3Q9NT62 314 aa16.96■□□□□ 0.31
SHF-211ENST00000561278 ERVV-2B6SEH9 535 aa16.95■□□□□ 0.3
SHF-211ENST00000561278 GNPATO15228 680 aa16.95■□□□□ 0.3
SHF-211ENST00000561278 SMIM5Q71RC9 77 aa16.95■□□□□ 0.3
SHF-211ENST00000561278 RBM42Q9BTD8 480 aaKnown RBP16.95■□□□□ 0.3
SHF-211ENST00000561278 KDRP35968 1356 aa16.94■□□□□ 0.3
SHF-211ENST00000561278 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.94■□□□□ 0.3
SHF-211ENST00000561278 PER1O15534 1290 aaPredicted RBP16.94■□□□□ 0.3
SHF-211ENST00000561278 ITPK1Q13572 414 aa16.94■□□□□ 0.3
SHF-211ENST00000561278 AMIGO3Q86WK7 504 aa16.94■□□□□ 0.3
SHF-211ENST00000561278 NLGN2Q8NFZ4 835 aa16.94■□□□□ 0.3
SHF-211ENST00000561278 UBR3Q6ZT12 1888 aa16.93■□□□□ 0.3
SHF-211ENST00000561278 HMOX1P09601 288 aa16.93■□□□□ 0.3
SHF-211ENST00000561278 SSFA2P28290 1259 aa16.93■□□□□ 0.3
SHF-211ENST00000561278 MAPK8IP2Q13387 824 aaPredicted RBP16.93■□□□□ 0.3
SHF-211ENST00000561278 DIAPH1O60610 1272 aaKnown RBP16.91■□□□□ 0.3
SHF-211ENST00000561278 PTCD1O75127 700 aaKnown RBP16.89■□□□□ 0.29
SHF-211ENST00000561278 NFATC2IPQ8NCF5 419 aa16.89■□□□□ 0.29
SHF-211ENST00000561278 NPC1L1Q9UHC9 1359 aa16.89■□□□□ 0.29
SHF-211ENST00000561278 AKAP4Q5JQC9 854 aa16.88■□□□□ 0.29
SHF-211ENST00000561278 SLC4A9Q96Q91 983 aa16.88■□□□□ 0.29
SHF-211ENST00000561278 RTCBQ9Y3I0 505 aaKnown RBP16.88■□□□□ 0.29
SHF-211ENST00000561278 U2SURPO15042 1029 aaKnown RBP16.87■□□□□ 0.29
SHF-211ENST00000561278 ZNF831Q5JPB2 1677 aa16.87■□□□□ 0.29
SHF-211ENST00000561278 UTRNP46939 3433 aa16.87■□□□□ 0.29
SHF-211ENST00000561278 COL5A3P25940 1745 aaPredicted RBP16.87■□□□□ 0.29
SHF-211ENST00000561278 SCN11AQ9UI33 1791 aa16.86■□□□□ 0.29
SHF-211ENST00000561278 COL3A1P02461 1466 aaPredicted RBP16.86■□□□□ 0.29
SHF-211ENST00000561278 TRAPPC3LQ5T215 181 aa16.85■□□□□ 0.29
SHF-211ENST00000561278 CD2APQ9Y5K6 639 aa16.85■□□□□ 0.29
SHF-211ENST00000561278 CNTNAP4Q9C0A0 1308 aa16.85■□□□□ 0.29
SHF-211ENST00000561278 MTHFSDQ2M296 383 aaKnown RBP16.84■□□□□ 0.29
SHF-211ENST00000561278 SLC52A2Q9HAB3 445 aa16.84■□□□□ 0.29
SHF-211ENST00000561278 LGR6Q9HBX8 967 aa16.84■□□□□ 0.29
SHF-211ENST00000561278 RNMTO43148 476 aaKnown RBP16.83■□□□□ 0.28
SHF-211ENST00000561278 YBX3P16989 372 aaKnown RBP eCLIP16.83■□□□□ 0.28
SHF-211ENST00000561278 ZNF784Q8NCA9 323 aaPredicted RBP16.83■□□□□ 0.28
SHF-211ENST00000561278 CFAP53Q96M91 514 aa16.83■□□□□ 0.28
SHF-211ENST00000561278 GOLGB1Q14789 3259 aaKnown RBP16.83■□□□□ 0.28
SHF-211ENST00000561278 CHD4Q14839 1912 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 TJP1Q07157 1748 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 MRC1P22897 1456 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 MMP10P09238 476 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 RFC4P35249 363 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 CRKLP46109 303 aaKnown RBP16.82■□□□□ 0.28
SHF-211ENST00000561278 RC3H1Q5TC82 1133 aaKnown RBP16.82■□□□□ 0.28
SHF-211ENST00000561278 WWC3Q9ULE0 1092 aa16.82■□□□□ 0.28
SHF-211ENST00000561278 GRIN3BO60391 1043 aa16.81■□□□□ 0.28
SHF-211ENST00000561278 RPS6KA4O75676 772 aa16.81■□□□□ 0.28
SHF-211ENST00000561278 ARHGEF1Q92888 912 aaKnown RBP16.81■□□□□ 0.28
SHF-211ENST00000561278 CICQ96RK0 1608 aaPredicted RBP16.81■□□□□ 0.28
SHF-211ENST00000561278 C4AP0C0L4 1744 aa16.8■□□□□ 0.28
SHF-211ENST00000561278 SLC39A6Q13433 755 aa16.8■□□□□ 0.28
SHF-211ENST00000561278 NLGN1Q8N2Q7 840 aa16.79■□□□□ 0.28
SHF-211ENST00000561278 VIRMAQ69YN4 1812 aaKnown RBP16.79■□□□□ 0.28
SHF-211ENST00000561278 GAS2L2Q8NHY3 880 aa16.78■□□□□ 0.28
SHF-211ENST00000561278 ADAMTS7Q9UKP4 1686 aa16.78■□□□□ 0.28
SHF-211ENST00000561278 GYS1P13807 737 aa16.77■□□□□ 0.28
SHF-211ENST00000561278 DNAJC10Q8IXB1 793 aa16.77■□□□□ 0.28
SHF-211ENST00000561278 TTC5Q8N0Z6 440 aa16.77■□□□□ 0.28
SHF-211ENST00000561278 KCPQ6ZWJ8 1503 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 PRKAR2BP31323 418 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 TEFQ10587 303 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 CCDC87Q9NVE4 849 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 SRP68Q9UHB9 627 aaKnown RBP16.76■□□□□ 0.27
SHF-211ENST00000561278 NUDCQ9Y266 331 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 PARP3Q9Y6F1 533 aa16.76■□□□□ 0.27
SHF-211ENST00000561278 MYH14Q7Z406 1995 aaKnown RBP16.75■□□□□ 0.27
SHF-211ENST00000561278 GNAT3A8MTJ3 354 aa16.75■□□□□ 0.27
SHF-211ENST00000561278 PPP2R1AP30153 589 aa16.75■□□□□ 0.27
SHF-211ENST00000561278 USP42Q9H9J4 1324 aaKnown RBP16.74■□□□□ 0.27
SHF-211ENST00000561278 C10orf71Q711Q0 1435 aa16.74■□□□□ 0.27
SHF-211ENST00000561278 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
SHF-211ENST00000561278 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
SHF-211ENST00000561278 PXDNLA1KZ92 1463 aa16.73■□□□□ 0.27
SHF-211ENST00000561278 INTS5Q6P9B9 1019 aaKnown RBP16.73■□□□□ 0.27
SHF-211ENST00000561278 RSPH6AQ9H0K4 717 aa16.73■□□□□ 0.27
SHF-211ENST00000561278 ZPR1O75312 459 aa16.72■□□□□ 0.27
SHF-211ENST00000561278 CYP19A1P11511 503 aaPredicted RBP16.72■□□□□ 0.27
SHF-211ENST00000561278 COL15A1P39059 1388 aa16.72■□□□□ 0.27
SHF-211ENST00000561278 UBR2Q8IWV8 1755 aa16.72■□□□□ 0.27
SHF-211ENST00000561278 SOS1Q07889 1333 aaPredicted RBP16.71■□□□□ 0.27
SHF-211ENST00000561278 FKBP8Q14318 412 aa16.71■□□□□ 0.27
SHF-211ENST00000561278 PHACTR3Q96KR7 559 aa16.71■□□□□ 0.27
SHF-211ENST00000561278 ZBTB1Q9Y2K1 713 aa16.71■□□□□ 0.27
SHF-211ENST00000561278 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
SHF-211ENST00000561278 N4BP2Q86UW6 1770 aaPredicted RBP16.7■□□□□ 0.26
SHF-211ENST00000561278 A0A0G2JLW4 131 aa16.7■□□□□ 0.26
SHF-211ENST00000561278 USPL1Q5W0Q7 1092 aa16.7■□□□□ 0.26
SHF-211ENST00000561278 VSIG10Q8N0Z9 540 aa16.7■□□□□ 0.26
SHF-211ENST00000561278 IL17REQ8NFR9 667 aa16.7■□□□□ 0.26
SHF-211ENST00000561278 GIGYF1O75420 1035 aaPredicted RBP16.69■□□□□ 0.26
SHF-211ENST00000561278 CANXP27824 592 aaKnown RBP16.69■□□□□ 0.26
SHF-211ENST00000561278 TGFB2P61812 414 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms