RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATF7IPQ6VMQ6 1270 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 NOL8Q76FK4 1167 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 AK7Q96M32 723 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 IL1RAPL2Q9NP60 686 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 IL17REQ8NFR9 667 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 XAGE3Q8WTP9 111 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 ZNF496Q96IT1 587 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-209ENST00000560637 SRCIN1Q9C0H9 1055 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 TFCP2L1Q9NZI6 479 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 DDX19BQ9UMR2 479 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 ZPR1O75312 459 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 FLIIQ13045 1269 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 DNAJC10Q8IXB1 793 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 IFT57Q9NWB7 429 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 ASAP1Q9ULH1 1129 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 APBA3O96018 575 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 MFAP1P55081 439 aaKnown RBP6.78□□□□□ -1.32
VPS13C-209ENST00000560637 EXOC6BQ9Y2D4 811 aa6.78□□□□□ -1.32
VPS13C-209ENST00000560637 POLR3AO14802 1390 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-209ENST00000560637 NWD1Q149M9 1564 aa6.77□□□□□ -1.32
VPS13C-209ENST00000560637 SOCS7O14512 581 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 G2E3Q7L622 706 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 TRIM35Q9UPQ4 493 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 GNPATO15228 680 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 FGD1P98174 961 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 G3BP1Q13283 466 aaKnown RBP eCLIP6.77□□□□□ -1.334e-7■■■■□ 24.8
VPS13C-209ENST00000560637 UBE3BQ7Z3V4 1068 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 VPS37DQ86XT2 251 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 SEPT12Q8IYM1 358 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 MAP3K2Q9Y2U5 619 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 SRGAP3O43295 1099 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 KCNQ2O43526 872 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 MAP4K4O95819 1239 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-209ENST00000560637 SNRPA1P09661 255 aaKnown RBP6.77□□□□□ -1.33
VPS13C-209ENST00000560637 TRIM27P14373 513 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 CWF19L2Q2TBE0 894 aaKnown RBP6.77□□□□□ -1.33
VPS13C-209ENST00000560637 MSL1Q68DK7 614 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 DCAF5Q96JK2 942 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 USP16Q9Y5T5 823 aa6.77□□□□□ -1.33
VPS13C-209ENST00000560637 A0A087WZG4 1122 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 TRMT112Q9UI30 125 aaKnown RBP6.76□□□□□ -1.33
VPS13C-209ENST00000560637 CCNL1Q9UK58 526 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-209ENST00000560637 RFC4P35249 363 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 FAM161AQ3B820 660 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 ZNF790Q6PG37 636 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 DBF4Q9UBU7 674 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-209ENST00000560637 PCDH11XQ9BZA7 1347 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 PCDH11YQ9BZA8 1340 aa6.76□□□□□ -1.33
VPS13C-209ENST00000560637 CNNM1Q9NRU3 951 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 TOMM22Q9NS69 142 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 TRPC5Q9UL62 973 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-209ENST00000560637 MAP3K5Q99683 1374 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 SMARCA5O60264 1052 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-209ENST00000560637 PHKG2P15735 406 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 RXRBP28702 533 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 UNC5CLQ8IV45 518 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 WDR17Q8IZU2 1322 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 IFIT2P09913 472 aaKnown RBP6.75□□□□□ -1.33
VPS13C-209ENST00000560637 STK11IPQ8N1F8 1099 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 TULP4Q9NRJ4 1543 aa6.75□□□□□ -1.33
VPS13C-209ENST00000560637 CYP27B1O15528 508 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 PIAS4Q8N2W9 510 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-209ENST00000560637 DNAAF4Q8WXU2 420 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 CHMP4CQ96CF2 233 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 LRRFIP2Q9Y608 721 aaKnown RBP6.74□□□□□ -1.33
VPS13C-209ENST00000560637 TRPM1Q7Z4N2 1603 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 RLBP1P12271 317 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 TSHZ3Q63HK5 1081 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 CASC1Q6TDU7 716 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 ANKRD13DQ6ZTN6 518 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 MEIS3Q99687 375 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 INSRP06213 1382 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 LRRC7Q96NW7 1537 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 GNAI2P04899 355 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 DNAJC2Q99543 621 aaKnown RBP6.74□□□□□ -1.33
VPS13C-209ENST00000560637 MPHOSPH8Q99549 860 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 TMEM131LA2VDJ0 1609 aa6.74□□□□□ -1.33
VPS13C-209ENST00000560637 MED1Q15648 1581 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 VAMP4O75379 141 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 CARD10Q9BWT7 1032 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 SLC52A2Q9HAB3 445 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 NIP7Q9Y221 180 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 GNAI3P08754 354 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 MVPQ14764 893 aaKnown RBP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 CCDC57Q2TAC2 916 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 DZIP3Q86Y13 1208 aaKnown RBP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 IQSEC3Q9UPP2 1182 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 ATP7BP35670 1465 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 NBR1Q14596 966 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 ZNF622Q969S3 477 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS13C-209ENST00000560637 FAM89AQ96GI7 184 aa6.73□□□□□ -1.33
VPS13C-209ENST00000560637 RAD21O60216 631 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 CCDC27Q2M243 656 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 PROSER3Q2NL68 480 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 SAMD1Q6SPF0 538 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-209ENST00000560637 KRT27Q7Z3Y8 459 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 NUTM1Q86Y26 1132 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 HDAC5Q9UQL6 1122 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 NBPF5PQ86XG9 351 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-209ENST00000560637 HELBQ8NG08 1087 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms