RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 KCNQ4P56696 695 aa12.46□□□□□ -0.41
LDLR-211ENST00000560173 LGR6Q9HBX8 967 aa12.46□□□□□ -0.41
LDLR-211ENST00000560173 ATG3Q9NT62 314 aa12.46□□□□□ -0.41
LDLR-211ENST00000560173 STK32BQ9NY57 414 aa12.46□□□□□ -0.41
LDLR-211ENST00000560173 GNAT3A8MTJ3 354 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 SLC15A2Q16348 729 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 ZNF827Q17R98 1081 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 NFATC2IPQ8NCF5 419 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 PLEKHF1Q96S99 279 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 SLC52A2Q9HAB3 445 aa12.45□□□□□ -0.42
LDLR-211ENST00000560173 LOC102724428A0A0B4J2F2 783 aa12.44□□□□□ -0.42
LDLR-211ENST00000560173 SIK1P57059 783 aa12.44□□□□□ -0.42
LDLR-211ENST00000560173 C1QTNF8P60827 252 aa12.44□□□□□ -0.42
LDLR-211ENST00000560173 AKT1S1Q96B36 256 aa12.44□□□□□ -0.42
LDLR-211ENST00000560173 CEMIPQ8WUJ3 1361 aa12.43□□□□□ -0.42
LDLR-211ENST00000560173 C5P01031 1676 aa12.43□□□□□ -0.42
LDLR-211ENST00000560173 IL17REQ8NFR9 667 aa12.43□□□□□ -0.42
LDLR-211ENST00000560173 VIRMAQ69YN4 1812 aaKnown RBP12.43□□□□□ -0.42
LDLR-211ENST00000560173 ANP32CO43423 234 aa12.42□□□□□ -0.42
LDLR-211ENST00000560173 NEFMP07197 916 aa12.42□□□□□ -0.42
LDLR-211ENST00000560173 WDR43Q15061 677 aaKnown RBP eCLIP12.42□□□□□ -0.42
LDLR-211ENST00000560173 PNNQ9H307 717 aaKnown RBP12.42□□□□□ -0.42
LDLR-211ENST00000560173 TAF1LQ8IZX4 1826 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 MAPK8IP3Q9UPT6 1336 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 ITPK1Q13572 414 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 NFE2L2Q16236 605 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 SLC4A9Q96Q91 983 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 ZNF831Q5JPB2 1677 aa12.41□□□□□ -0.42
LDLR-211ENST00000560173 SIPA1L3O60292 1781 aaPredicted RBP12.41□□□□□ -0.42
LDLR-211ENST00000560173 HTATSF1O43719 755 aaKnown RBP12.4□□□□□ -0.42
LDLR-211ENST00000560173 TEFQ10587 303 aa12.4□□□□□ -0.42
LDLR-211ENST00000560173 CCDC184Q52MB2 194 aa12.4□□□□□ -0.42
LDLR-211ENST00000560173 LINC00116Q8NCU8 138 aa12.4□□□□□ -0.42
LDLR-211ENST00000560173 PDGFDQ9GZP0 370 aaPredicted RBP12.4□□□□□ -0.42
LDLR-211ENST00000560173 CEP350Q5VT06 3117 aa12.4□□□□□ -0.42
LDLR-211ENST00000560173 KCPQ6ZWJ8 1503 aa12.4□□□□□ -0.42
LDLR-211ENST00000560173 C4BP0C0L5 1744 aa12.4□□□□□ -0.43
LDLR-211ENST00000560173 QSER1Q2KHR3 1735 aa12.4□□□□□ -0.43
LDLR-211ENST00000560173 TUBGCP6Q96RT7 1819 aa12.39□□□□□ -0.43
LDLR-211ENST00000560173 HMGB2P26583 209 aaKnown RBP12.39□□□□□ -0.43
LDLR-211ENST00000560173 ATP6V1AP38606 617 aa12.39□□□□□ -0.43
LDLR-211ENST00000560173 MCM10Q7L590 875 aa12.39□□□□□ -0.43
LDLR-211ENST00000560173 RTF1Q92541 710 aaKnown RBP12.39□□□□□ -0.43
LDLR-211ENST00000560173 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
LDLR-211ENST00000560173 TFCP2L1Q9NZI6 479 aa12.39□□□□□ -0.43
LDLR-211ENST00000560173 ADAMTS8Q9UP79 889 aa12.39□□□□□ -0.43
LDLR-211ENST00000560173 CICQ96RK0 1608 aaPredicted RBP12.39□□□□□ -0.43
LDLR-211ENST00000560173 PNPLA7Q6ZV29 1317 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 PTCD1O75127 700 aaKnown RBP12.38□□□□□ -0.43
LDLR-211ENST00000560173 PTGER2P43116 358 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 SLC39A6Q13433 755 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 DCTN1Q14203 1278 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 CCDC146Q8IYE0 955 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 DLG5Q8TDM6 1919 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 UBR2Q8IWV8 1755 aa12.38□□□□□ -0.43
LDLR-211ENST00000560173 TJP1Q07157 1748 aa12.37□□□□□ -0.43
LDLR-211ENST00000560173 ZBTB7AO95365 584 aa12.37□□□□□ -0.43
LDLR-211ENST00000560173 RUNDC1Q96C34 613 aa12.37□□□□□ -0.43
LDLR-211ENST00000560173 AK7Q96M32 723 aa12.37□□□□□ -0.43
LDLR-211ENST00000560173 COL5A3P25940 1745 aaPredicted RBP12.37□□□□□ -0.43
LDLR-211ENST00000560173 TMPOP42166 694 aaKnown RBP12.36□□□□□ -0.43
LDLR-211ENST00000560173 AMIGO3Q86WK7 504 aa12.36□□□□□ -0.43
LDLR-211ENST00000560173 SYT17Q9BSW7 474 aa12.36□□□□□ -0.43
LDLR-211ENST00000560173 MRS2Q9HD23 443 aa12.36□□□□□ -0.43
LDLR-211ENST00000560173 CNTNAP4Q9C0A0 1308 aa12.36□□□□□ -0.43
LDLR-211ENST00000560173 ZNF790Q6PG37 636 aa12.35□□□□□ -0.43
LDLR-211ENST00000560173 TTC5Q8N0Z6 440 aa12.35□□□□□ -0.43
LDLR-211ENST00000560173 FHDC1Q9C0D6 1143 aaPredicted RBP12.35□□□□□ -0.43
LDLR-211ENST00000560173 ATF5Q9Y2D1 282 aaPredicted RBP12.35□□□□□ -0.43
LDLR-211ENST00000560173 UBR3Q6ZT12 1888 aa12.35□□□□□ -0.43
LDLR-211ENST00000560173 BTBD11A6QL63 1104 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 GNPATO15228 680 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 RIPK4P57078 832 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 RC3H1Q5TC82 1133 aaKnown RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 COL23A1Q86Y22 540 aaPredicted RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 DNAJC10Q8IXB1 793 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 VSIG10Q8N0Z9 540 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 PNISRQ8TF01 805 aaKnown RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 ZNF496Q96IT1 587 aaPredicted RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 THUMPD2Q9BTF0 503 aaKnown RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 MTFR1LQ9H019 292 aa12.34□□□□□ -0.43
LDLR-211ENST00000560173 RRP7AQ9Y3A4 280 aaKnown RBP12.34□□□□□ -0.43
LDLR-211ENST00000560173 HEG1Q9ULI3 1381 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.33□□□□□ -0.44
LDLR-211ENST00000560173 KCNQ3O43525 872 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 SSFA2P28290 1259 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 LMOD3Q0VAK6 560 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 TAF7Q15545 349 aaPredicted RBP12.33□□□□□ -0.44
LDLR-211ENST00000560173 FLAD1Q8NFF5 587 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 SLC16A10Q8TF71 515 aa12.33□□□□□ -0.44
LDLR-211ENST00000560173 MYH14Q7Z406 1995 aaKnown RBP12.32□□□□□ -0.44
LDLR-211ENST00000560173 PHF14O94880 888 aa12.32□□□□□ -0.44
LDLR-211ENST00000560173 CRKLP46109 303 aaKnown RBP12.32□□□□□ -0.44
LDLR-211ENST00000560173 SMIM5Q71RC9 77 aa12.32□□□□□ -0.44
LDLR-211ENST00000560173 FMNL2Q96PY5 1086 aa12.32□□□□□ -0.44
LDLR-211ENST00000560173 GOLGB1Q14789 3259 aaKnown RBP12.31□□□□□ -0.44
LDLR-211ENST00000560173 GIGYF1O75420 1035 aaPredicted RBP12.31□□□□□ -0.44
LDLR-211ENST00000560173 CYP19A1P11511 503 aaPredicted RBP12.31□□□□□ -0.44
LDLR-211ENST00000560173 NEUROD2Q15784 382 aa12.31□□□□□ -0.44
LDLR-211ENST00000560173 INTS5Q6P9B9 1019 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms