RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PALLDQ8WX93 1383 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 VIRMAQ69YN4 1812 aaKnown RBP13.2□□□□□ -0.3
USP3-216ENST00000559873 MCM10Q7L590 875 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 TTC5Q8N0Z6 440 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 PIGBQ92521 554 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 LGR6Q9HBX8 967 aa13.2□□□□□ -0.3
USP3-216ENST00000559873 PLSCR1O15162 318 aa13.19□□□□□ -0.3
USP3-216ENST00000559873 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
USP3-216ENST00000559873 NFATC2IPQ8NCF5 419 aa13.19□□□□□ -0.3
USP3-216ENST00000559873 DCTN1Q14203 1278 aa13.18□□□□□ -0.3
USP3-216ENST00000559873 PAPPAQ13219 1627 aa13.17□□□□□ -0.3
USP3-216ENST00000559873 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
USP3-216ENST00000559873 SLC27A3Q5K4L6 730 aa13.17□□□□□ -0.3
USP3-216ENST00000559873 PTF1AQ7RTS3 328 aa13.17□□□□□ -0.3
USP3-216ENST00000559873 BABAM1Q9NWV8 329 aa13.17□□□□□ -0.3
USP3-216ENST00000559873 SIPA1L3O60292 1781 aaPredicted RBP13.17□□□□□ -0.3
USP3-216ENST00000559873 EN1Q05925 392 aaPredicted RBP13.16□□□□□ -0.3
USP3-216ENST00000559873 TAF7Q15545 349 aaPredicted RBP13.16□□□□□ -0.3
USP3-216ENST00000559873 TRIM35Q9UPQ4 493 aa13.16□□□□□ -0.3
USP3-216ENST00000559873 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
USP3-216ENST00000559873 DEFB132Q7Z7B7 95 aa13.15□□□□□ -0.3
USP3-216ENST00000559873 CAMKK2Q96RR4 588 aa13.15□□□□□ -0.3
USP3-216ENST00000559873 ATG3Q9NT62 314 aa13.15□□□□□ -0.3
USP3-216ENST00000559873 CCNL1Q9UK58 526 aaPredicted RBP13.15□□□□□ -0.3
USP3-216ENST00000559873 LY75O60449 1722 aa13.15□□□□□ -0.3
USP3-216ENST00000559873 RREB1Q92766 1687 aa13.15□□□□□ -0.31
USP3-216ENST00000559873 GNAI1P63096 354 aa13.14□□□□□ -0.31
USP3-216ENST00000559873 ZNF790Q6PG37 636 aa13.14□□□□□ -0.31
USP3-216ENST00000559873 WWC1Q8IX03 1113 aa13.14□□□□□ -0.31
USP3-216ENST00000559873 THUMPD2Q9BTF0 503 aaKnown RBP13.14□□□□□ -0.31
USP3-216ENST00000559873 TSPYL4Q9UJ04 414 aa13.14□□□□□ -0.31
USP3-216ENST00000559873 ASAP1Q9ULH1 1129 aa13.14□□□□□ -0.31
USP3-216ENST00000559873 ZNF831Q5JPB2 1677 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 LOC102724428A0A0B4J2F2 783 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 SIK1P57059 783 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 EZH2Q15910 746 aaKnown RBP13.13□□□□□ -0.31
USP3-216ENST00000559873 FMNL2Q96PY5 1086 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
USP3-216ENST00000559873 IFT57Q9NWB7 429 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 KCPQ6ZWJ8 1503 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 IL16Q14005 1332 aa13.13□□□□□ -0.31
USP3-216ENST00000559873 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 UBR2Q8IWV8 1755 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 ATP6V1AP38606 617 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 SLC39A6Q13433 755 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 NBPF14Q5TI25 921 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 WDR63Q8IWG1 891 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 VSIG10Q8N0Z9 540 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 CFAP44Q96MT7 982 aa13.12□□□□□ -0.31
USP3-216ENST00000559873 SALL2Q9Y467 1007 aaPredicted RBP13.12□□□□□ -0.31
USP3-216ENST00000559873 CICQ96RK0 1608 aaPredicted RBP13.12□□□□□ -0.31
USP3-216ENST00000559873 NUP188Q5SRE5 1749 aa13.11□□□□□ -0.31
USP3-216ENST00000559873 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
USP3-216ENST00000559873 PTCD1O75127 700 aaKnown RBP13.11□□□□□ -0.31
USP3-216ENST00000559873 LAS1LQ9Y4W2 734 aaKnown RBP13.11□□□□□ -0.31
USP3-216ENST00000559873 C5P01031 1676 aa13.1□□□□□ -0.31
USP3-216ENST00000559873 HNRNPUQ00839 825 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP3-216ENST00000559873 TEX13AQ9BXU3 409 aaPredicted RBP13.1□□□□□ -0.31
USP3-216ENST00000559873 SENP3-EIF4A1A0A087X0R7 540 aa13.09□□□□□ -0.31
USP3-216ENST00000559873 CHL1O00533 1208 aa13.09□□□□□ -0.31
USP3-216ENST00000559873 ZNF496Q96IT1 587 aaPredicted RBP13.09□□□□□ -0.31
USP3-216ENST00000559873 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
USP3-216ENST00000559873 STK32BQ9NY57 414 aa13.09□□□□□ -0.31
USP3-216ENST00000559873 SNRPA1P09661 255 aaKnown RBP13.08□□□□□ -0.32
USP3-216ENST00000559873 MIS18AQ9NYP9 233 aa13.08□□□□□ -0.32
USP3-216ENST00000559873 TJP1Q07157 1748 aa13.08□□□□□ -0.32
USP3-216ENST00000559873 STARD3NLO95772 234 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 ZNF853P0CG23 659 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 PROM2Q8N271 834 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 AK7Q96M32 723 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 CHMP4AQ9BY43 222 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 MBIPQ9NS73 344 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 C4BP0C0L5 1744 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 ZNF521Q96K83 1311 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 CNTNAP4Q9C0A0 1308 aa13.07□□□□□ -0.32
USP3-216ENST00000559873 COL5A3P25940 1745 aaPredicted RBP13.06□□□□□ -0.32
USP3-216ENST00000559873 E9PSI1 815 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 KCNQ3O43525 872 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 HOXB7P09629 217 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 EIF4A1P60842 406 aaKnown RBP13.06□□□□□ -0.32
USP3-216ENST00000559873 ITPK1Q13572 414 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 LRRC4BQ9NT99 713 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 LAMB4A4D0S4 1761 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 SOS1Q07889 1333 aaPredicted RBP13.06□□□□□ -0.32
USP3-216ENST00000559873 ZBED9Q6R2W3 1325 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 TAF1LQ8IZX4 1826 aa13.06□□□□□ -0.32
USP3-216ENST00000559873 NPM2Q86SE8 214 aaKnown RBP13.05□□□□□ -0.32
USP3-216ENST00000559873 DNAJC10Q8IXB1 793 aa13.05□□□□□ -0.32
USP3-216ENST00000559873 LINC00116Q8NCU8 138 aa13.05□□□□□ -0.32
USP3-216ENST00000559873 SLC4A9Q96Q91 983 aa13.05□□□□□ -0.32
USP3-216ENST00000559873 FANCIQ9NVI1 1328 aa13.05□□□□□ -0.32
USP3-216ENST00000559873 KCNQ4P56696 695 aa13.04□□□□□ -0.32
USP3-216ENST00000559873 SLC15A2Q16348 729 aa13.04□□□□□ -0.32
USP3-216ENST00000559873 RC3H1Q5TC82 1133 aaKnown RBP13.04□□□□□ -0.32
USP3-216ENST00000559873 FLAD1Q8NFF5 587 aa13.04□□□□□ -0.32
USP3-216ENST00000559873 TFCP2L1Q9NZI6 479 aa13.04□□□□□ -0.32
USP3-216ENST00000559873 GNPATO15228 680 aa13.03□□□□□ -0.32
USP3-216ENST00000559873 GIGYF1O75420 1035 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms