RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 ASAP1Q9ULH1 1129 aa15.24■□□□□ 0.03
SNX1-204ENST00000559061 HSP90AB1P08238 724 aaKnown RBP15.23■□□□□ 0.03
SNX1-204ENST00000559061 KCNQ4P56696 695 aa15.23■□□□□ 0.03
SNX1-204ENST00000559061 TXNRD1Q16881 649 aa15.23■□□□□ 0.03
SNX1-204ENST00000559061 ANO8Q9HCE9 1232 aaPredicted RBP15.23■□□□□ 0.03
SNX1-204ENST00000559061 ATG3Q9NT62 314 aa15.23■□□□□ 0.03
SNX1-204ENST00000559061 PALLDQ8WX93 1383 aa15.23■□□□□ 0.03
SNX1-204ENST00000559061 KDM3BQ7LBC6 1761 aa15.22■□□□□ 0.03
SNX1-204ENST00000559061 GNAT3A8MTJ3 354 aa15.22■□□□□ 0.03
SNX1-204ENST00000559061 DCTN1Q14203 1278 aa15.22■□□□□ 0.03
SNX1-204ENST00000559061 SLC4A9Q96Q91 983 aa15.22■□□□□ 0.03
SNX1-204ENST00000559061 MRS2Q9HD23 443 aa15.22■□□□□ 0.03
SNX1-204ENST00000559061 CASZ1Q86V15 1759 aa15.21■□□□□ 0.03
SNX1-204ENST00000559061 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
SNX1-204ENST00000559061 NFATC2IPQ8NCF5 419 aa15.21■□□□□ 0.03
SNX1-204ENST00000559061 SLC52A2Q9HAB3 445 aa15.21■□□□□ 0.03
SNX1-204ENST00000559061 TMOD3Q9NYL9 352 aa15.21■□□□□ 0.03
SNX1-204ENST00000559061 QSER1Q2KHR3 1735 aa15.2■□□□□ 0.02
SNX1-204ENST00000559061 WDR43Q15061 677 aaKnown RBP eCLIP15.2■□□□□ 0.02
SNX1-204ENST00000559061 MCM10Q7L590 875 aa15.2■□□□□ 0.02
SNX1-204ENST00000559061 C4BP0C0L5 1744 aa15.2■□□□□ 0.02
SNX1-204ENST00000559061 TMPOP42166 694 aaKnown RBP15.19■□□□□ 0.02
SNX1-204ENST00000559061 CABP4P57796 275 aa15.19■□□□□ 0.02
SNX1-204ENST00000559061 DIEXFQ68CQ4 756 aaKnown RBP15.19■□□□□ 0.02
SNX1-204ENST00000559061 THUMPD2Q9BTF0 503 aaKnown RBP15.19■□□□□ 0.02
SNX1-204ENST00000559061 RRP7AQ9Y3A4 280 aaKnown RBP15.19■□□□□ 0.02
SNX1-204ENST00000559061 ZNF827Q17R98 1081 aa15.18■□□□□ 0.02
SNX1-204ENST00000559061 RUNDC1Q96C34 613 aa15.18■□□□□ 0.02
SNX1-204ENST00000559061 TRIM35Q9UPQ4 493 aa15.18■□□□□ 0.02
SNX1-204ENST00000559061 UBR3Q6ZT12 1888 aa15.18■□□□□ 0.02
SNX1-204ENST00000559061 MYH14Q7Z406 1995 aaKnown RBP15.18■□□□□ 0.02
SNX1-204ENST00000559061 SLC39A6Q13433 755 aa15.17■□□□□ 0.02
SNX1-204ENST00000559061 ITPK1Q13572 414 aa15.17■□□□□ 0.02
SNX1-204ENST00000559061 MIER1Q8N108 512 aa15.17■□□□□ 0.02
SNX1-204ENST00000559061 MAPK8IP3Q9UPT6 1336 aa15.17■□□□□ 0.02
SNX1-204ENST00000559061 KCNQ3O43525 872 aa15.16■□□□□ 0.02
SNX1-204ENST00000559061 AMIGO3Q86WK7 504 aa15.16■□□□□ 0.02
SNX1-204ENST00000559061 SENP3-EIF4A1A0A087X0R7 540 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 LOC102724428A0A0B4J2F2 783 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 HTATSF1O43719 755 aaKnown RBP15.15■□□□□ 0.02
SNX1-204ENST00000559061 SIK1P57059 783 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 SLC27A3Q5K4L6 730 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 LINC00116Q8NCU8 138 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 AKT1S1Q96B36 256 aa15.15■□□□□ 0.02
SNX1-204ENST00000559061 PDGFDQ9GZP0 370 aaPredicted RBP15.15■□□□□ 0.02
SNX1-204ENST00000559061 CCNL1Q9UK58 526 aaPredicted RBP15.15■□□□□ 0.02
SNX1-204ENST00000559061 APAF1O14727 1248 aa15.14■□□□□ 0.01
SNX1-204ENST00000559061 RIPK4P57078 832 aa15.14■□□□□ 0.01
SNX1-204ENST00000559061 SMARCC1Q92922 1105 aaPredicted RBP15.14■□□□□ 0.01
SNX1-204ENST00000559061 PSDA5PKW4 1024 aaPredicted RBP15.13■□□□□ 0.01
SNX1-204ENST00000559061 CCER2I3L3R5 266 aa15.13■□□□□ 0.01
SNX1-204ENST00000559061 PNNQ9H307 717 aaKnown RBP15.13■□□□□ 0.01
SNX1-204ENST00000559061 COL24A1Q17RW2 1714 aa15.12■□□□□ 0.01
SNX1-204ENST00000559061 R3HDM1Q15032 1099 aaKnown RBP15.12■□□□□ 0.01
SNX1-204ENST00000559061 C4AP0C0L4 1744 aa15.12■□□□□ 0.01
SNX1-204ENST00000559061 LAMB4A4D0S4 1761 aa15.11■□□□□ 0.01
SNX1-204ENST00000559061 NEUROD2Q15784 382 aa15.11■□□□□ 0.01
SNX1-204ENST00000559061 SMIM5Q71RC9 77 aa15.11■□□□□ 0.01
SNX1-204ENST00000559061 ZNF496Q96IT1 587 aaPredicted RBP15.11■□□□□ 0.01
SNX1-204ENST00000559061 MIS18AQ9NYP9 233 aa15.11■□□□□ 0.01
SNX1-204ENST00000559061 PTCD1O75127 700 aaKnown RBP15.1■□□□□ 0.01
SNX1-204ENST00000559061 TEFQ10587 303 aa15.1■□□□□ 0.01
SNX1-204ENST00000559061 SLC15A2Q16348 729 aa15.1■□□□□ 0.01
SNX1-204ENST00000559061 ZNF790Q6PG37 636 aa15.1■□□□□ 0.01
SNX1-204ENST00000559061 RTF1Q92541 710 aaKnown RBP15.1■□□□□ 0.01
SNX1-204ENST00000559061 ATP6V1AP38606 617 aa15.09■□□□□ 0.01
SNX1-204ENST00000559061 FAM9BQ8IZU0 186 aa15.09■□□□□ 0.01
SNX1-204ENST00000559061 RBM42Q9BTD8 480 aaKnown RBP15.09■□□□□ 0.01
SNX1-204ENST00000559061 PNPLA7Q6ZV29 1317 aa15.09■□□□□ 0.01
SNX1-204ENST00000559061 HEG1Q9ULI3 1381 aa15.09■□□□□ 0.01
SNX1-204ENST00000559061 PRAMEF22A3QJZ6 481 aa15.08■□□□□ 0
SNX1-204ENST00000559061 BTBD11A6QL63 1104 aa15.08■□□□□ 0
SNX1-204ENST00000559061 NEFMP07197 916 aa15.08■□□□□ 0
SNX1-204ENST00000559061 DNAJC10Q8IXB1 793 aa15.08■□□□□ 0
SNX1-204ENST00000559061 TAF7Q15545 349 aaPredicted RBP15.07■□□□□ 0
SNX1-204ENST00000559061 LRP5O75197 1615 aa15.06■□□□□ 0
SNX1-204ENST00000559061 INTS5Q6P9B9 1019 aaKnown RBP15.06■□□□□ 0
SNX1-204ENST00000559061 CNTNAP4Q9C0A0 1308 aa15.06■□□□□ 0
SNX1-204ENST00000559061 ZNF853P0CG23 659 aa15.05■□□□□ -0
SNX1-204ENST00000559061 CYP19A1P11511 503 aaPredicted RBP15.05■□□□□ -0
SNX1-204ENST00000559061 STK32BQ9NY57 414 aa15.05■□□□□ -0
SNX1-204ENST00000559061 ZNF521Q96K83 1311 aa15.04■□□□□ -0
SNX1-204ENST00000559061 CHL1O00533 1208 aa15.04■□□□□ -0
SNX1-204ENST00000559061 EIF4A1P60842 406 aaKnown RBP15.04■□□□□ -0
SNX1-204ENST00000559061 LMOD3Q0VAK6 560 aa15.04■□□□□ -0
SNX1-204ENST00000559061 CCDC27Q2M243 656 aa15.04■□□□□ -0
SNX1-204ENST00000559061 NBPF14Q5TI25 921 aa15.04■□□□□ -0
SNX1-204ENST00000559061 VSIG10Q8N0Z9 540 aa15.04■□□□□ -0
SNX1-204ENST00000559061 SRCAPQ6ZRS2 3230 aa15.04■□□□□ -0
SNX1-204ENST00000559061 CRKLP46109 303 aaKnown RBP15.03■□□□□ -0
SNX1-204ENST00000559061 KRT24Q2M2I5 525 aa15.03■□□□□ -0
SNX1-204ENST00000559061 COL23A1Q86Y22 540 aaPredicted RBP15.03■□□□□ -0
SNX1-204ENST00000559061 WWC1Q8IX03 1113 aa15.03■□□□□ -0
SNX1-204ENST00000559061 NCBP3Q53F19 620 aaKnown RBP15.02■□□□□ -0
SNX1-204ENST00000559061 RC3H1Q5TC82 1133 aaKnown RBP15.02■□□□□ -0
SNX1-204ENST00000559061 TTC5Q8N0Z6 440 aa15.02■□□□□ -0
SNX1-204ENST00000559061 FMNL2Q96PY5 1086 aa15.02■□□□□ -0
SNX1-204ENST00000559061 SCN7AQ01118 1682 aa15.01□□□□□ -0.01
SNX1-204ENST00000559061 GNPATO15228 680 aa15.01□□□□□ -0.01
SNX1-204ENST00000559061 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms