RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 NPATQ14207 1427 aa13.63□□□□□ -0.23
LDLR-208ENST00000558518 CASTP20810 708 aaKnown RBP13.63□□□□□ -0.23
LDLR-208ENST00000558518 CLEC17AQ6ZS10 378 aa13.63□□□□□ -0.23
LDLR-208ENST00000558518 IBTKQ9P2D0 1353 aaPredicted RBP13.62□□□□□ -0.23
LDLR-208ENST00000558518 MYRIPQ8NFW9 859 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 BCL2L12Q9HB09 334 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 ABCC1P33527 1531 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 CHMLP26374 656 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 ATP7AQ04656 1500 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 RIOK3O14730 519 aaKnown RBP13.62□□□□□ -0.23
LDLR-208ENST00000558518 NAA30Q147X3 362 aaPredicted RBP13.62□□□□□ -0.23
LDLR-208ENST00000558518 CCDC183Q5T5S1 534 aa13.62□□□□□ -0.23
LDLR-208ENST00000558518 ANXA1P04083 346 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 PTGS1P23219 599 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 MTERF4Q7Z6M4 381 aaKnown RBP13.61□□□□□ -0.23
LDLR-208ENST00000558518 QRICH2Q9H0J4 1663 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 RTL1A6NKG5 1358 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 MCM5P33992 734 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 ZBTB9Q96C00 473 aa13.61□□□□□ -0.23
LDLR-208ENST00000558518 TRIM5Q9C035 493 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 CFAP74Q9C0B2 1584 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 LRMPQ12912 555 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 LUZP1Q86V48 1076 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 KIF1BO60333 1816 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 STX6O43752 255 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 SYT1P21579 422 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 AK2P54819 239 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 HMGN5P82970 282 aaKnown RBP13.6□□□□□ -0.23
LDLR-208ENST00000558518 ZNF710Q8N1W2 664 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 PIBF1Q8WXW3 757 aa13.6□□□□□ -0.23
LDLR-208ENST00000558518 JAKMIP1Q96N16 626 aaKnown RBP13.6□□□□□ -0.23
LDLR-208ENST00000558518 ZFYVE16Q7Z3T8 1539 aa13.59□□□□□ -0.23
LDLR-208ENST00000558518 TULP4Q9NRJ4 1543 aa13.59□□□□□ -0.23
LDLR-208ENST00000558518 MYOM2P54296 1465 aa13.59□□□□□ -0.23
LDLR-208ENST00000558518 UBTFL1P0CB47 393 aaPredicted RBP13.59□□□□□ -0.23
LDLR-208ENST00000558518 PRPF40BQ6NWY9 871 aaKnown RBP13.59□□□□□ -0.23
LDLR-208ENST00000558518 SMAP1Q8IYB5 467 aaPredicted RBP13.59□□□□□ -0.23
LDLR-208ENST00000558518 DIAPH3Q9NSV4 1193 aa13.59□□□□□ -0.23
LDLR-208ENST00000558518 GJB2P29033 226 aa13.58□□□□□ -0.23
LDLR-208ENST00000558518 MCM2P49736 904 aa13.58□□□□□ -0.23
LDLR-208ENST00000558518 TERF1P54274 439 aa13.58□□□□□ -0.23
LDLR-208ENST00000558518 RIMS2Q9UQ26 1411 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 RPGRIP1LQ68CZ1 1315 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 EIF4A2Q14240 407 aaKnown RBP13.58□□□□□ -0.24
LDLR-208ENST00000558518 TRERF1Q96PN7 1200 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 CGNQ9P2M7 1197 aaKnown RBP13.58□□□□□ -0.24
LDLR-208ENST00000558518 LRRC7Q96NW7 1537 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 LARGE1O95461 756 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 ZNF853P0CG23 659 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 CCDC186Q7Z3E2 898 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 RASEFQ8IZ41 740 aa13.58□□□□□ -0.24
LDLR-208ENST00000558518 KDM4AO75164 1064 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 ZSCAN22P10073 491 aaPredicted RBP13.57□□□□□ -0.24
LDLR-208ENST00000558518 BICD2Q8TD16 824 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 SYTL4Q96C24 671 aaPredicted RBP13.57□□□□□ -0.24
LDLR-208ENST00000558518 NUDT16Q96DE0 195 aaKnown RBP13.57□□□□□ -0.24
LDLR-208ENST00000558518 A0A087WWV3 80 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 SRGAP3O43295 1099 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 NRBP1Q9UHY1 535 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 ERICH4A6NGS2 130 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 AMPHP49418 695 aa13.57□□□□□ -0.24
LDLR-208ENST00000558518 MROH2AA6NES4 1674 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 HAP1P54257 671 aaPredicted RBP13.56□□□□□ -0.24
LDLR-208ENST00000558518 TPD52L1Q16890 204 aaPredicted RBP13.56□□□□□ -0.24
LDLR-208ENST00000558518 TRMT1Q9NXH9 659 aaKnown RBP13.56□□□□□ -0.24
LDLR-208ENST00000558518 TET3O43151 1660 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 PTCH1Q13635 1447 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 GOLGA6L6A8MZA4 724 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 FLIIQ13045 1269 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 YTHDC2Q9H6S0 1430 aaKnown RBP13.56□□□□□ -0.24
LDLR-208ENST00000558518 FGD1P98174 961 aa13.56□□□□□ -0.24
LDLR-208ENST00000558518 LARP1BQ659C4 914 aaKnown RBP13.55□□□□□ -0.24
LDLR-208ENST00000558518 AP5Z1O43299 807 aa13.55□□□□□ -0.24
LDLR-208ENST00000558518 FILIP1Q7Z7B0 1213 aa13.55□□□□□ -0.24
LDLR-208ENST00000558518 F13A1P00488 732 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 UBE2HP62256 183 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 USHBP1Q8N6Y0 703 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 FAM184AQ8NB25 1140 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 PRIMPOLQ96LW4 560 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 FAM135BQ49AJ0 1406 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 CCT4P50991 539 aaKnown RBP13.54□□□□□ -0.24
LDLR-208ENST00000558518 PPP1R42Q7Z4L9 355 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 DDX11Q96FC9 970 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.54□□□□□ -0.24
LDLR-208ENST00000558518 CCDC192P0DO97 292 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 ZSCAN20P17040 1043 aaPredicted RBP13.54□□□□□ -0.24
LDLR-208ENST00000558518 PHAXQ9H814 394 aaKnown RBP13.54□□□□□ -0.24
LDLR-208ENST00000558518 TCHHQ07283 1943 aa13.54□□□□□ -0.24
LDLR-208ENST00000558518 TNMDQ9H2S6 317 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 PDRG1Q9NUG6 133 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 SNX14Q9Y5W7 946 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 BRPF1P55201 1214 aaPredicted RBP13.53□□□□□ -0.24
LDLR-208ENST00000558518 MTHFSDQ2M296 383 aaKnown RBP13.53□□□□□ -0.24
LDLR-208ENST00000558518 ERCC4Q92889 916 aaPredicted RBP13.53□□□□□ -0.24
LDLR-208ENST00000558518 SIL1Q9H173 461 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 LIMCH1Q9UPQ0 1083 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 ATP6V1DQ9Y5K8 247 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 ZBTB22O15209 634 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 GNAI3P08754 354 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 TNNT1P13805 278 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms