RNA–Protein interactions for RNA: ENST00000558347.5

TPM1-212, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,525 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-212ENST00000558347 HMOX1P09601 288 aa13.74□□□□□ -0.21
TPM1-212ENST00000558347 SIK1P57059 783 aa13.74□□□□□ -0.21
TPM1-212ENST00000558347 COL23A1Q86Y22 540 aaPredicted RBP13.74□□□□□ -0.21
TPM1-212ENST00000558347 FHDC1Q9C0D6 1143 aaPredicted RBP13.74□□□□□ -0.21
TPM1-212ENST00000558347 ERVV-2B6SEH9 535 aa13.74□□□□□ -0.21
TPM1-212ENST00000558347 ARXQ96QS3 562 aa13.74□□□□□ -0.21
TPM1-212ENST00000558347 UBR3Q6ZT12 1888 aa13.74□□□□□ -0.21
TPM1-212ENST00000558347 UTRNP46939 3433 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 SCN11AQ9UI33 1791 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 MSH5O43196 834 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 ITPK1Q13572 414 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 C1orf141Q5JVX7 400 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 AMIGO3Q86WK7 504 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 LINC00116Q8NCU8 138 aa13.73□□□□□ -0.21
TPM1-212ENST00000558347 RALBP1Q15311 655 aa13.72□□□□□ -0.21
TPM1-212ENST00000558347 SMIM5Q71RC9 77 aa13.72□□□□□ -0.21
TPM1-212ENST00000558347 SYT17Q9BSW7 474 aa13.72□□□□□ -0.21
TPM1-212ENST00000558347 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.21
TPM1-212ENST00000558347 ATP6V1AP38606 617 aa13.71□□□□□ -0.21
TPM1-212ENST00000558347 AK7Q96M32 723 aa13.71□□□□□ -0.21
TPM1-212ENST00000558347 SLC4A9Q96Q91 983 aa13.71□□□□□ -0.21
TPM1-212ENST00000558347 POLD1P28340 1107 aa13.7□□□□□ -0.22
TPM1-212ENST00000558347 CABP4P57796 275 aa13.7□□□□□ -0.22
TPM1-212ENST00000558347 AKAP4Q5JQC9 854 aa13.7□□□□□ -0.22
TPM1-212ENST00000558347 ZNF831Q5JPB2 1677 aa13.7□□□□□ -0.22
TPM1-212ENST00000558347 NEFLP07196 543 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 HMGB2P26583 209 aaKnown RBP13.69□□□□□ -0.22
TPM1-212ENST00000558347 MTHFSDQ2M296 383 aaKnown RBP13.69□□□□□ -0.22
TPM1-212ENST00000558347 MSL1Q68DK7 614 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 NFATC2IPQ8NCF5 419 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 RBM42Q9BTD8 480 aaKnown RBP13.69□□□□□ -0.22
TPM1-212ENST00000558347 COL5A3P25940 1745 aaPredicted RBP13.69□□□□□ -0.22
TPM1-212ENST00000558347 MAP3K5Q99683 1374 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 U2SURPO15042 1029 aaKnown RBP13.69□□□□□ -0.22
TPM1-212ENST00000558347 PHF14O94880 888 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 FLAD1Q8NFF5 587 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 LGR6Q9HBX8 967 aa13.69□□□□□ -0.22
TPM1-212ENST00000558347 ADAMTS7Q9UKP4 1686 aa13.68□□□□□ -0.22
TPM1-212ENST00000558347 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.68□□□□□ -0.22
TPM1-212ENST00000558347 PPP2R1AP30153 589 aa13.68□□□□□ -0.22
TPM1-212ENST00000558347 GOLGB1Q14789 3259 aaKnown RBP13.67□□□□□ -0.22
TPM1-212ENST00000558347 SSFA2P28290 1259 aa13.67□□□□□ -0.22
TPM1-212ENST00000558347 KLHL34Q8N239 644 aa13.67□□□□□ -0.22
TPM1-212ENST00000558347 MYBBP1AQ9BQG0 1328 aaKnown RBP13.67□□□□□ -0.22
TPM1-212ENST00000558347 MRC1P22897 1456 aa13.67□□□□□ -0.22
TPM1-212ENST00000558347 GNPATO15228 680 aa13.66□□□□□ -0.22
TPM1-212ENST00000558347 RNMTO43148 476 aaKnown RBP13.66□□□□□ -0.22
TPM1-212ENST00000558347 SLC52A2Q9HAB3 445 aa13.66□□□□□ -0.22
TPM1-212ENST00000558347 TJP1Q07157 1748 aa13.66□□□□□ -0.22
TPM1-212ENST00000558347 PTCD1O75127 700 aaKnown RBP13.65□□□□□ -0.22
TPM1-212ENST00000558347 DCAF8L1A6NGE4 600 aa13.64□□□□□ -0.23
TPM1-212ENST00000558347 MYH14Q7Z406 1995 aaKnown RBP13.64□□□□□ -0.23
TPM1-212ENST00000558347 CFAP53Q96M91 514 aa13.64□□□□□ -0.23
TPM1-212ENST00000558347 CICQ96RK0 1608 aaPredicted RBP13.64□□□□□ -0.23
TPM1-212ENST00000558347 CNTNAP4Q9C0A0 1308 aa13.64□□□□□ -0.23
TPM1-212ENST00000558347 FKBP8Q14318 412 aa13.64□□□□□ -0.23
TPM1-212ENST00000558347 NLGN2Q8NFZ4 835 aa13.64□□□□□ -0.23
TPM1-212ENST00000558347 SLC39A6Q13433 755 aa13.63□□□□□ -0.23
TPM1-212ENST00000558347 PHACTR3Q96KR7 559 aa13.63□□□□□ -0.23
TPM1-212ENST00000558347 RSPH6AQ9H0K4 717 aa13.63□□□□□ -0.23
TPM1-212ENST00000558347 PRKAR2BP31323 418 aa13.62□□□□□ -0.23
TPM1-212ENST00000558347 RC3H1Q5TC82 1133 aaKnown RBP13.62□□□□□ -0.23
TPM1-212ENST00000558347 GAS2L2Q8NHY3 880 aa13.62□□□□□ -0.23
TPM1-212ENST00000558347 RTCBQ9Y3I0 505 aaKnown RBP13.62□□□□□ -0.23
TPM1-212ENST00000558347 KCPQ6ZWJ8 1503 aa13.62□□□□□ -0.23
TPM1-212ENST00000558347 C4AP0C0L4 1744 aa13.61□□□□□ -0.23
TPM1-212ENST00000558347 TSHZ2Q9NRE2 1034 aa13.61□□□□□ -0.23
TPM1-212ENST00000558347 NUDCQ9Y266 331 aa13.61□□□□□ -0.23
TPM1-212ENST00000558347 SIPA1L3O60292 1781 aaPredicted RBP13.61□□□□□ -0.23
TPM1-212ENST00000558347 RPS6KA4O75676 772 aa13.6□□□□□ -0.23
TPM1-212ENST00000558347 U2AF1L5P0DN76 240 aaPredicted RBP13.6□□□□□ -0.23
TPM1-212ENST00000558347 YY1P25490 414 aa13.6□□□□□ -0.23
TPM1-212ENST00000558347 CRKLP46109 303 aaKnown RBP13.6□□□□□ -0.23
TPM1-212ENST00000558347 U2AF1Q01081 240 aaKnown RBP eCLIP13.6□□□□□ -0.236e-9■■■■□ 21.7
TPM1-212ENST00000558347 TRAPPC3LQ5T215 181 aa13.6□□□□□ -0.23
TPM1-212ENST00000558347 IL17REQ8NFR9 667 aa13.6□□□□□ -0.23
TPM1-212ENST00000558347 ARHGEF1Q92888 912 aaKnown RBP13.6□□□□□ -0.23
TPM1-212ENST00000558347 UBR2Q8IWV8 1755 aa13.6□□□□□ -0.23
TPM1-212ENST00000558347 GNAT3A8MTJ3 354 aa13.59□□□□□ -0.23
TPM1-212ENST00000558347 ERICH6BQ5W0A0 696 aa13.59□□□□□ -0.23
TPM1-212ENST00000558347 DNAJC10Q8IXB1 793 aa13.59□□□□□ -0.23
TPM1-212ENST00000558347 MRS2Q9HD23 443 aa13.59□□□□□ -0.23
TPM1-212ENST00000558347 CCDC184Q52MB2 194 aa13.59□□□□□ -0.23
TPM1-212ENST00000558347 ADRA2BP18089 450 aa13.58□□□□□ -0.24
TPM1-212ENST00000558347 GPR162Q16538 588 aa13.58□□□□□ -0.24
TPM1-212ENST00000558347 CD2APQ9Y5K6 639 aa13.58□□□□□ -0.24
TPM1-212ENST00000558347 CEMIPQ8WUJ3 1361 aa13.57□□□□□ -0.24
TPM1-212ENST00000558347 FCHSD2O94868 740 aa13.57□□□□□ -0.24
TPM1-212ENST00000558347 RFC4P35249 363 aa13.57□□□□□ -0.24
TPM1-212ENST00000558347 HNRNPUQ00839 825 aaKnown RBP eCLIP13.57□□□□□ -0.24
TPM1-212ENST00000558347 TEFQ10587 303 aa13.57□□□□□ -0.24
TPM1-212ENST00000558347 INTS5Q6P9B9 1019 aaKnown RBP13.57□□□□□ -0.24
TPM1-212ENST00000558347 CHD4Q14839 1912 aa13.56□□□□□ -0.24
TPM1-212ENST00000558347 MMP10P09238 476 aa13.56□□□□□ -0.24
TPM1-212ENST00000558347 CYP19A1P11511 503 aaPredicted RBP13.56□□□□□ -0.24
TPM1-212ENST00000558347 GYS1P13807 737 aa13.56□□□□□ -0.24
TPM1-212ENST00000558347 YBX3P16989 372 aaKnown RBP eCLIP13.55□□□□□ -0.24
TPM1-212ENST00000558347 VSIG10Q8N0Z9 540 aa13.55□□□□□ -0.24
TPM1-212ENST00000558347 NLGN1Q8N2Q7 840 aa13.55□□□□□ -0.24
TPM1-212ENST00000558347 CCDC87Q9NVE4 849 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms