RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 SHANK3Q9BYB0 1731 aa13.79□□□□□ -0.2
USP3-207ENST00000558218 PER1O15534 1290 aaPredicted RBP13.79□□□□□ -0.2
USP3-207ENST00000558218 TNNT2P45379 298 aaPredicted RBP13.79□□□□□ -0.2
USP3-207ENST00000558218 EIF4A2Q14240 407 aaKnown RBP13.79□□□□□ -0.2
USP3-207ENST00000558218 AMER1Q5JTC6 1135 aaPredicted RBP13.79□□□□□ -0.2
USP3-207ENST00000558218 DCAF8Q5TAQ9 597 aa13.79□□□□□ -0.2
USP3-207ENST00000558218 CYP27B1O15528 508 aa13.78□□□□□ -0.2
USP3-207ENST00000558218 LRRC4BQ9NT99 713 aa13.78□□□□□ -0.2
USP3-207ENST00000558218 IFNL2Q8IZJ0 200 aa13.77□□□□□ -0.21
USP3-207ENST00000558218 SLC16A10Q8TF71 515 aa13.77□□□□□ -0.21
USP3-207ENST00000558218 MTFR1LQ9H019 292 aa13.77□□□□□ -0.21
USP3-207ENST00000558218 IGSF1Q8N6C5 1336 aa13.76□□□□□ -0.21
USP3-207ENST00000558218 SMARCC1Q92922 1105 aaPredicted RBP13.76□□□□□ -0.21
USP3-207ENST00000558218 FAM212AQ96EL1 285 aa13.76□□□□□ -0.21
USP3-207ENST00000558218 PPP1R1BQ9UD71 204 aaPredicted RBP13.76□□□□□ -0.21
USP3-207ENST00000558218 CASZ1Q86V15 1759 aa13.76□□□□□ -0.21
USP3-207ENST00000558218 PKD1L3Q7Z443 1732 aa13.76□□□□□ -0.21
USP3-207ENST00000558218 NPC1L1Q9UHC9 1359 aa13.75□□□□□ -0.21
USP3-207ENST00000558218 AMOTQ4VCS5 1084 aa13.75□□□□□ -0.21
USP3-207ENST00000558218 MS4A3Q96HJ5 214 aa13.75□□□□□ -0.21
USP3-207ENST00000558218 DOT1LQ8TEK3 1739 aa13.75□□□□□ -0.21
USP3-207ENST00000558218 LY75O60449 1722 aa13.74□□□□□ -0.21
USP3-207ENST00000558218 HSP90AB1P08238 724 aaKnown RBP13.74□□□□□ -0.21
USP3-207ENST00000558218 PLEKHO1Q53GL0 409 aaPredicted RBP13.74□□□□□ -0.21
USP3-207ENST00000558218 MPRIPQ6WCQ1 1025 aa13.74□□□□□ -0.21
USP3-207ENST00000558218 CCNL1Q9UK58 526 aaPredicted RBP13.74□□□□□ -0.21
USP3-207ENST00000558218 PAPPAQ13219 1627 aa13.74□□□□□ -0.21
USP3-207ENST00000558218 PHKG2P15735 406 aa13.73□□□□□ -0.21
USP3-207ENST00000558218 PTGER2P43116 358 aa13.73□□□□□ -0.21
USP3-207ENST00000558218 PDGFDQ9GZP0 370 aaPredicted RBP13.73□□□□□ -0.21
USP3-207ENST00000558218 ERVV-2B6SEH9 535 aa13.72□□□□□ -0.21
USP3-207ENST00000558218 ZBTB7AO95365 584 aa13.72□□□□□ -0.21
USP3-207ENST00000558218 IL13P35225 146 aa13.72□□□□□ -0.21
USP3-207ENST00000558218 ZNF827Q17R98 1081 aa13.72□□□□□ -0.21
USP3-207ENST00000558218 TFCP2L1Q9NZI6 479 aa13.72□□□□□ -0.21
USP3-207ENST00000558218 MAP3K13O43283 966 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 MTHFSP49914 203 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 FLAD1Q8NFF5 587 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 PIGBQ92521 554 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 SPOCK2Q92563 424 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 SGIP1Q9BQI5 828 aa13.71□□□□□ -0.21
USP3-207ENST00000558218 QSER1Q2KHR3 1735 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 POTEIP0CG38 1075 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 KIF12Q96FN5 646 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 DCAF5Q96JK2 942 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 TMOD3Q9NYL9 352 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 KDRP35968 1356 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 PALLDQ8WX93 1383 aa13.7□□□□□ -0.22
USP3-207ENST00000558218 ITGB4P16144 1822 aa13.69□□□□□ -0.22
USP3-207ENST00000558218 PYGBP11216 843 aa13.69□□□□□ -0.22
USP3-207ENST00000558218 PNPLA7Q6ZV29 1317 aa13.68□□□□□ -0.22
USP3-207ENST00000558218 KCNQ4P56696 695 aa13.68□□□□□ -0.22
USP3-207ENST00000558218 SULT6B1Q6IMI4 303 aa13.68□□□□□ -0.22
USP3-207ENST00000558218 POLD1P28340 1107 aa13.67□□□□□ -0.22
USP3-207ENST00000558218 CC2D1BQ5T0F9 858 aaKnown RBP13.67□□□□□ -0.22
USP3-207ENST00000558218 DCBLD2Q96PD2 775 aa13.67□□□□□ -0.22
USP3-207ENST00000558218 ARXQ96QS3 562 aa13.67□□□□□ -0.22
USP3-207ENST00000558218 CIZ1Q9ULV3 898 aaPredicted RBP13.67□□□□□ -0.22
USP3-207ENST00000558218 LOC102724428A0A0B4J2F2 783 aa13.66□□□□□ -0.22
USP3-207ENST00000558218 DIAPH1O60610 1272 aaKnown RBP13.66□□□□□ -0.22
USP3-207ENST00000558218 SIK1P57059 783 aa13.66□□□□□ -0.22
USP3-207ENST00000558218 C1orf141Q5JVX7 400 aa13.66□□□□□ -0.22
USP3-207ENST00000558218 ZNF530Q6P9A1 599 aaPredicted RBP13.66□□□□□ -0.22
USP3-207ENST00000558218 TRPC6Q9Y210 931 aa13.66□□□□□ -0.22
USP3-207ENST00000558218 MAP3K5Q99683 1374 aa13.66□□□□□ -0.22
USP3-207ENST00000558218 TOGARAM1Q9Y4F4 1720 aa13.65□□□□□ -0.22
USP3-207ENST00000558218 COL23A1Q86Y22 540 aaPredicted RBP13.65□□□□□ -0.22
USP3-207ENST00000558218 AEBP1Q8IUX7 1158 aa13.65□□□□□ -0.22
USP3-207ENST00000558218 SYT17Q9BSW7 474 aa13.65□□□□□ -0.22
USP3-207ENST00000558218 ATG3Q9NT62 314 aa13.65□□□□□ -0.22
USP3-207ENST00000558218 CABP4P57796 275 aa13.64□□□□□ -0.23
USP3-207ENST00000558218 FHDC1Q9C0D6 1143 aaPredicted RBP13.64□□□□□ -0.23
USP3-207ENST00000558218 ASAP1Q9ULH1 1129 aa13.64□□□□□ -0.23
USP3-207ENST00000558218 COL24A1Q17RW2 1714 aa13.64□□□□□ -0.23
USP3-207ENST00000558218 TAF1LQ8IZX4 1826 aa13.63□□□□□ -0.23
USP3-207ENST00000558218 AKAP4Q5JQC9 854 aa13.63□□□□□ -0.23
USP3-207ENST00000558218 C5P01031 1676 aa13.63□□□□□ -0.23
USP3-207ENST00000558218 SSFA2P28290 1259 aa13.62□□□□□ -0.23
USP3-207ENST00000558218 ATP6V1AP38606 617 aa13.62□□□□□ -0.23
USP3-207ENST00000558218 AK7Q96M32 723 aa13.62□□□□□ -0.23
USP3-207ENST00000558218 CLCN6P51797 869 aa13.61□□□□□ -0.23
USP3-207ENST00000558218 RC3H1Q5TC82 1133 aaKnown RBP13.61□□□□□ -0.23
USP3-207ENST00000558218 CFAP53Q96M91 514 aa13.61□□□□□ -0.23
USP3-207ENST00000558218 PCDHB13Q9Y5F0 798 aa13.61□□□□□ -0.23
USP3-207ENST00000558218 ZNF831Q5JPB2 1677 aa13.6□□□□□ -0.23
USP3-207ENST00000558218 KDM6AO15550 1401 aaPredicted RBP13.6□□□□□ -0.23
USP3-207ENST00000558218 NFATC2IPQ8NCF5 419 aa13.6□□□□□ -0.23
USP3-207ENST00000558218 TUBGCP6Q96RT7 1819 aa13.6□□□□□ -0.23
USP3-207ENST00000558218 C4BP0C0L5 1744 aa13.59□□□□□ -0.23
USP3-207ENST00000558218 HMOX1P09601 288 aa13.59□□□□□ -0.23
USP3-207ENST00000558218 ITPK1Q13572 414 aa13.59□□□□□ -0.23
USP3-207ENST00000558218 LINC00116Q8NCU8 138 aa13.59□□□□□ -0.23
USP3-207ENST00000558218 NUDCQ9Y266 331 aa13.59□□□□□ -0.23
USP3-207ENST00000558218 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.58□□□□□ -0.24
USP3-207ENST00000558218 GSE1Q14687 1217 aa13.57□□□□□ -0.24
USP3-207ENST00000558218 MTHFSDQ2M296 383 aaKnown RBP13.57□□□□□ -0.24
USP3-207ENST00000558218 SLC52A2Q9HAB3 445 aa13.57□□□□□ -0.24
USP3-207ENST00000558218 RTCBQ9Y3I0 505 aaKnown RBP13.57□□□□□ -0.24
USP3-207ENST00000558218 CD2APQ9Y5K6 639 aa13.57□□□□□ -0.24
USP3-207ENST00000558218 SCN11AQ9UI33 1791 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms