RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CABLES1Q8TDN4 633 aa13.39□□□□□ -0.27
USP3-206ENST00000558157 ARHGEF25Q86VW2 580 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 WWC1Q8IX03 1113 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 TCP11L2Q8N4U5 519 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 PRIMPOLQ96LW4 560 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 PRKAR2BP31323 418 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 HMGN5P82970 282 aaKnown RBP13.38□□□□□ -0.27
USP3-206ENST00000558157 NCBP3Q53F19 620 aaKnown RBP13.38□□□□□ -0.27
USP3-206ENST00000558157 MYRIPQ8NFW9 859 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 IP6K1Q92551 441 aa13.38□□□□□ -0.27
USP3-206ENST00000558157 RRP7AQ9Y3A4 280 aaKnown RBP13.38□□□□□ -0.27
USP3-206ENST00000558157 KIF16BQ96L93 1317 aa13.37□□□□□ -0.27
USP3-206ENST00000558157 K7ELQ4 463 aaPredicted RBP13.37□□□□□ -0.27
USP3-206ENST00000558157 FCHSD2O94868 740 aa13.37□□□□□ -0.27
USP3-206ENST00000558157 MVPQ14764 893 aaKnown RBP13.37□□□□□ -0.27
USP3-206ENST00000558157 RGPD5Q99666 1765 aa13.37□□□□□ -0.27
USP3-206ENST00000558157 GTF2F1P35269 517 aaKnown RBP eCLIP13.37□□□□□ -0.27
USP3-206ENST00000558157 PHLPP1O60346 1717 aa13.36□□□□□ -0.27
USP3-206ENST00000558157 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
USP3-206ENST00000558157 ZC3H6P61129 1189 aaKnown RBP13.36□□□□□ -0.27
USP3-206ENST00000558157 PPP4R3BQ5MIZ7 849 aa13.36□□□□□ -0.27
USP3-206ENST00000558157 AEBP1Q8IUX7 1158 aa13.36□□□□□ -0.27
USP3-206ENST00000558157 WDR63Q8IWG1 891 aa13.36□□□□□ -0.27
USP3-206ENST00000558157 LTV1Q96GA3 475 aaPredicted RBP13.36□□□□□ -0.27
USP3-206ENST00000558157 RGPD2P0DJD1 1756 aa13.36□□□□□ -0.27
USP3-206ENST00000558157 NEUROD2Q15784 382 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 COL18A1P39060 1754 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 CT47B1P0C2W7 299 aaPredicted RBP13.35□□□□□ -0.27
USP3-206ENST00000558157 RLBP1P12271 317 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 ZSCAN23Q3MJ62 389 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 SULT6B1Q6IMI4 303 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 IGSF1Q8N6C5 1336 aa13.35□□□□□ -0.27
USP3-206ENST00000558157 COL16A1Q07092 1604 aaPredicted RBP13.35□□□□□ -0.27
USP3-206ENST00000558157 NUCB2P80303 420 aa13.34□□□□□ -0.27
USP3-206ENST00000558157 BBXQ8WY36 941 aaPredicted RBP13.34□□□□□ -0.27
USP3-206ENST00000558157 TOM1O60784 492 aa13.34□□□□□ -0.27
USP3-206ENST00000558157 EYA1Q99502 592 aa13.34□□□□□ -0.27
USP3-206ENST00000558157 PIP4K2BP78356 416 aa13.33□□□□□ -0.27
USP3-206ENST00000558157 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.27
USP3-206ENST00000558157 PRDM10Q9NQV6 1147 aa13.33□□□□□ -0.27
USP3-206ENST00000558157 ABCC6O95255 1503 aa13.33□□□□□ -0.28
USP3-206ENST00000558157 KIAA0232Q92628 1395 aa13.33□□□□□ -0.28
USP3-206ENST00000558157 TMPOP42166 694 aaKnown RBP13.33□□□□□ -0.28
USP3-206ENST00000558157 PHACTR3Q96KR7 559 aa13.33□□□□□ -0.28
USP3-206ENST00000558157 CAMTA1Q9Y6Y1 1673 aa13.33□□□□□ -0.28
USP3-206ENST00000558157 COL22A1Q8NFW1 1626 aaPredicted RBP13.32□□□□□ -0.28
USP3-206ENST00000558157 CPDO75976 1380 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 KDRP35968 1356 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 GTF2E1P29083 439 aaPredicted RBP13.32□□□□□ -0.28
USP3-206ENST00000558157 KIAA2012Q0VF49 1180 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 CCDC27Q2M243 656 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 DLG5Q8TDM6 1919 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 UBAP1LF5GYI3 381 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 SSFA2P28290 1259 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 RBSNQ9H1K0 784 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 AXIN2Q9Y2T1 843 aa13.32□□□□□ -0.28
USP3-206ENST00000558157 ZKSCAN2Q63HK3 967 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 KIF2CQ99661 725 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 CHRNA2Q15822 529 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 BMP2KLQ5H9B9 411 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 USHBP1Q8N6Y0 703 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 ANKRD24Q8TF21 1146 aa13.31□□□□□ -0.28
USP3-206ENST00000558157 LMO7Q8WWI1 1683 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 HAP1P54257 671 aaPredicted RBP13.3□□□□□ -0.28
USP3-206ENST00000558157 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
USP3-206ENST00000558157 LRRC59Q96AG4 307 aaKnown RBP13.3□□□□□ -0.28
USP3-206ENST00000558157 DDX19BQ9UMR2 479 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 NFE2L2Q16236 605 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 CAVIN1Q6NZI2 390 aaKnown RBP13.3□□□□□ -0.28
USP3-206ENST00000558157 LRSAM1Q6UWE0 723 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 CERKQ8TCT0 537 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 LMBRD1Q9NUN5 540 aa13.3□□□□□ -0.28
USP3-206ENST00000558157 FTSJ3Q8IY81 847 aaKnown RBP13.29□□□□□ -0.28
USP3-206ENST00000558157 CFAP44Q96MT7 982 aa13.29□□□□□ -0.28
USP3-206ENST00000558157 TRIM35Q9UPQ4 493 aa13.29□□□□□ -0.28
USP3-206ENST00000558157 FAM208AQ9UK61 1670 aaKnown RBP13.29□□□□□ -0.28
USP3-206ENST00000558157 CYP2E1P05181 493 aaPredicted RBP13.29□□□□□ -0.28
USP3-206ENST00000558157 NBPF6Q5VWK0 638 aa13.29□□□□□ -0.28
USP3-206ENST00000558157 NBPF4Q96M43 638 aa13.29□□□□□ -0.28
USP3-206ENST00000558157 CWC22Q9HCG8 908 aaKnown RBP13.29□□□□□ -0.28
USP3-206ENST00000558157 ERBB3P21860 1342 aa13.29□□□□□ -0.28
USP3-206ENST00000558157 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
USP3-206ENST00000558157 NCAPD2Q15021 1401 aa13.28□□□□□ -0.28
USP3-206ENST00000558157 NUCB1Q02818 461 aa13.28□□□□□ -0.28
USP3-206ENST00000558157 PRDM11Q9NQV5 511 aa13.28□□□□□ -0.28
USP3-206ENST00000558157 MCTP1Q6DN14 999 aa13.26□□□□□ -0.29
USP3-206ENST00000558157 ZNF710Q8N1W2 664 aa13.26□□□□□ -0.29
USP3-206ENST00000558157 GAS2L2Q8NHY3 880 aa13.26□□□□□ -0.29
USP3-206ENST00000558157 IPO4Q8TEX9 1081 aaKnown RBP13.26□□□□□ -0.29
USP3-206ENST00000558157 KIF3AQ9Y496 699 aa13.26□□□□□ -0.29
USP3-206ENST00000558157 PIBF1Q8WXW3 757 aa13.25□□□□□ -0.29
USP3-206ENST00000558157 MBD3O95983 291 aa13.25□□□□□ -0.29
USP3-206ENST00000558157 PDIA4P13667 645 aaKnown RBP13.25□□□□□ -0.29
USP3-206ENST00000558157 RABEP1Q15276 862 aa13.24□□□□□ -0.29
USP3-206ENST00000558157 ARID3AQ99856 593 aa13.24□□□□□ -0.29
USP3-206ENST00000558157 NAP1L2Q9ULW6 460 aaPredicted RBP13.24□□□□□ -0.29
USP3-206ENST00000558157 TNNQ9UQP3 1299 aa13.24□□□□□ -0.29
USP3-206ENST00000558157 COL5A2P05997 1499 aaPredicted RBP13.24□□□□□ -0.29
USP3-206ENST00000558157 COL14A1Q05707 1796 aaKnown RBP13.24□□□□□ -0.29
USP3-206ENST00000558157 CD2BP2O95400 341 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms