RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IL1RAPL2Q9NP60 686 aa15.1■□□□□ 0.01
LDLR-205ENST00000557933 NUCB2P80303 420 aa15.1■□□□□ 0.01
LDLR-205ENST00000557933 TMX3Q96JJ7 454 aa15.1■□□□□ 0.01
LDLR-205ENST00000557933 PTPRUQ92729 1446 aa15.09■□□□□ 0.01
LDLR-205ENST00000557933 OFD1O75665 1012 aa15.09■□□□□ 0.01
LDLR-205ENST00000557933 IL25Q9H293 177 aa15.09■□□□□ 0.01
LDLR-205ENST00000557933 ISY1Q9ULR0 285 aaKnown RBP15.09■□□□□ 0.01
LDLR-205ENST00000557933 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.09■□□□□ 0.01
LDLR-205ENST00000557933 HSP90AB2PQ58FF8 381 aa15.09■□□□□ 0.01
LDLR-205ENST00000557933 DNTTIP2Q5QJE6 756 aaKnown RBP15.09■□□□□ 0.01
LDLR-205ENST00000557933 ITSN1Q15811 1721 aa15.08■□□□□ 0.01
LDLR-205ENST00000557933 ZNF853P0CG23 659 aa15.08■□□□□ 0
LDLR-205ENST00000557933 UNC5CLQ8IV45 518 aa15.08■□□□□ 0
LDLR-205ENST00000557933 ANKRD44Q8N8A2 993 aa15.08■□□□□ 0
LDLR-205ENST00000557933 ANKRD26Q9UPS8 1709 aa15.08■□□□□ 0
LDLR-205ENST00000557933 NPHP4O75161 1426 aaPredicted RBP15.08■□□□□ 0
LDLR-205ENST00000557933 ANKLE2Q86XL3 938 aa15.08■□□□□ 0
LDLR-205ENST00000557933 CYP2E1P05181 493 aaPredicted RBP15.07■□□□□ 0
LDLR-205ENST00000557933 COG3Q96JB2 828 aa15.07■□□□□ 0
LDLR-205ENST00000557933 CPA1P15085 419 aa15.07■□□□□ 0
LDLR-205ENST00000557933 CASC1Q6TDU7 716 aa15.07■□□□□ 0
LDLR-205ENST00000557933 ARHGAP45Q92619 1136 aa15.07■□□□□ 0
LDLR-205ENST00000557933 PNPLA6Q8IY17 1366 aa15.07■□□□□ 0
LDLR-205ENST00000557933 ATP7BP35670 1465 aa15.07■□□□□ 0
LDLR-205ENST00000557933 AKAP12Q02952 1782 aa15.06■□□□□ 0
LDLR-205ENST00000557933 ZNF445P59923 1031 aa15.06■□□□□ 0
LDLR-205ENST00000557933 CHMP3Q9Y3E7 222 aa15.06■□□□□ 0
LDLR-205ENST00000557933 TPM2P07951 284 aa15.06■□□□□ 0
LDLR-205ENST00000557933 CDC42BPGQ6DT37 1551 aa15.05■□□□□ 0
LDLR-205ENST00000557933 PNMA6EA0A0J9YXQ4 647 aa15.05■□□□□ 0
LDLR-205ENST00000557933 ERC2O15083 957 aa15.05■□□□□ 0
LDLR-205ENST00000557933 LMTK3Q96Q04 1460 aa15.05■□□□□ -0
LDLR-205ENST00000557933 PDE1AP54750 535 aa15.05■□□□□ -0
LDLR-205ENST00000557933 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.05■□□□□ -0
LDLR-205ENST00000557933 NUTM1Q86Y26 1132 aa15.05■□□□□ -0
LDLR-205ENST00000557933 MON2Q7Z3U7 1717 aa15.05■□□□□ -0
LDLR-205ENST00000557933 RTL1A6NKG5 1358 aa15.04■□□□□ -0
LDLR-205ENST00000557933 USP25Q9UHP3 1055 aa15.04■□□□□ -0
LDLR-205ENST00000557933 FMN2Q9NZ56 1722 aa15.04■□□□□ -0
LDLR-205ENST00000557933 EIF4A2Q14240 407 aaKnown RBP15.04■□□□□ -0
LDLR-205ENST00000557933 NUTM2GQ5VZR2 741 aa15.04■□□□□ -0
LDLR-205ENST00000557933 TTC12Q9H892 705 aaPredicted RBP15.04■□□□□ -0
LDLR-205ENST00000557933 ATP10DQ9P241 1426 aa15.04■□□□□ -0
LDLR-205ENST00000557933 ROBO2Q9HCK4 1378 aa15.03■□□□□ -0
LDLR-205ENST00000557933 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.03■□□□□ -0
LDLR-205ENST00000557933 REC8O95072 547 aa15.03■□□□□ -0
LDLR-205ENST00000557933 NOL7Q9UMY1 257 aaKnown RBP15.03■□□□□ -0
LDLR-205ENST00000557933 KDM4FA0A1W2PPD8 638 aa15.03■□□□□ -0
LDLR-205ENST00000557933 LRSAM1Q6UWE0 723 aa15.03■□□□□ -0
LDLR-205ENST00000557933 NUDT16Q96DE0 195 aaKnown RBP15.03■□□□□ -0
LDLR-205ENST00000557933 CHMP4BQ9H444 224 aaKnown RBP15.03■□□□□ -0
LDLR-205ENST00000557933 PDCL3Q9H2J4 239 aa15.02■□□□□ -0
LDLR-205ENST00000557933 FKBP5Q13451 457 aaPredicted RBP15.02□□□□□ -0.01
LDLR-205ENST00000557933 LTV1Q96GA3 475 aaPredicted RBP15.02□□□□□ -0.01
LDLR-205ENST00000557933 TSPYL4Q9UJ04 414 aa15.02□□□□□ -0.01
LDLR-205ENST00000557933 ZKSCAN5Q9Y2L8 839 aa15.02□□□□□ -0.01
LDLR-205ENST00000557933 STRCQ7RTU9 1775 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 NCBP3Q53F19 620 aaKnown RBP15.01□□□□□ -0.01
LDLR-205ENST00000557933 NALCNQ8IZF0 1738 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 KIF20BQ96Q89 1820 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 PTMSP20962 102 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 BRPF1P55201 1214 aaPredicted RBP15.01□□□□□ -0.01
LDLR-205ENST00000557933 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.01□□□□□ -0.01
LDLR-205ENST00000557933 ANKARQ7Z5J8 1434 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 NRKQ7Z2Y5 1582 aa15.01□□□□□ -0.01
LDLR-205ENST00000557933 FIBPO43427 364 aa15□□□□□ -0.01
LDLR-205ENST00000557933 HCLS1P14317 486 aaPredicted RBP15□□□□□ -0.01
LDLR-205ENST00000557933 CNPY2Q9Y2B0 182 aa15□□□□□ -0.01
LDLR-205ENST00000557933 USP54Q70EL1 1684 aa15□□□□□ -0.01
LDLR-205ENST00000557933 CLEC17AQ6ZS10 378 aa14.99□□□□□ -0.01
LDLR-205ENST00000557933 USP48Q86UV5 1035 aa14.99□□□□□ -0.01
LDLR-205ENST00000557933 RPAP2Q8IXW5 612 aaPredicted RBP14.99□□□□□ -0.01
LDLR-205ENST00000557933 PDLIM2Q96JY6 352 aa14.99□□□□□ -0.01
LDLR-205ENST00000557933 MAP2P11137 1827 aaKnown RBP14.99□□□□□ -0.01
LDLR-205ENST00000557933 WASLO00401 505 aaPredicted RBP14.98□□□□□ -0.01
LDLR-205ENST00000557933 ESYT1Q9BSJ8 1104 aa14.98□□□□□ -0.01
LDLR-205ENST00000557933 ZHX1Q9UKY1 873 aaPredicted RBP14.98□□□□□ -0.01
LDLR-205ENST00000557933 LRRFIP2Q9Y608 721 aaKnown RBP14.98□□□□□ -0.01
LDLR-205ENST00000557933 ANXA1P04083 346 aa14.98□□□□□ -0.01
LDLR-205ENST00000557933 LMOD3Q0VAK6 560 aa14.98□□□□□ -0.01
LDLR-205ENST00000557933 SPG7Q9UQ90 795 aa14.98□□□□□ -0.01
LDLR-205ENST00000557933 RGS12O14924 1447 aa14.98□□□□□ -0.01
LDLR-205ENST00000557933 MX1P20591 662 aa14.97□□□□□ -0.01
LDLR-205ENST00000557933 SPC24Q8NBT2 197 aa14.97□□□□□ -0.01
LDLR-205ENST00000557933 TSPY26PQ9H489 355 aa14.97□□□□□ -0.01
LDLR-205ENST00000557933 CWC22Q9HCG8 908 aaKnown RBP14.97□□□□□ -0.01
LDLR-205ENST00000557933 CPSF1Q10570 1443 aaKnown RBP14.97□□□□□ -0.01
LDLR-205ENST00000557933 MTHFSDQ2M296 383 aaKnown RBP14.96□□□□□ -0.01
LDLR-205ENST00000557933 CHL1O00533 1208 aa14.96□□□□□ -0.01
LDLR-205ENST00000557933 BRD1O95696 1058 aa14.96□□□□□ -0.02
LDLR-205ENST00000557933 FAM173BQ6P4H8 233 aa14.96□□□□□ -0.02
LDLR-205ENST00000557933 GIMAP6Q6P9H5 292 aa14.96□□□□□ -0.02
LDLR-205ENST00000557933 AMOTL2Q9Y2J4 779 aa14.96□□□□□ -0.02
LDLR-205ENST00000557933 IGSF3O75054 1194 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 EIF2S2P20042 333 aaKnown RBP14.95□□□□□ -0.02
LDLR-205ENST00000557933 CHMLP26374 656 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 LRRCC1Q9C099 1032 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 HMMRO75330 724 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 COL9A3Q14050 684 aaPredicted RBP14.95□□□□□ -0.02
LDLR-205ENST00000557933 RTF1Q92541 710 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms