RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 UPF3BQ9BZI7 483 aaKnown RBP13.89□□□□□ -0.19
SRP54-213ENST00000556994 GDPD2Q9HCC8 539 aa13.89□□□□□ -0.19
SRP54-213ENST00000556994 ZMYND15Q9H091 742 aa13.88□□□□□ -0.19
SRP54-213ENST00000556994 ACEP12821 1306 aa13.88□□□□□ -0.19
SRP54-213ENST00000556994 DIP2BQ9P265 1576 aa13.88□□□□□ -0.19
SRP54-213ENST00000556994 BRD1O95696 1058 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 CCT4P50991 539 aaKnown RBP13.87□□□□□ -0.19
SRP54-213ENST00000556994 HS1BP3Q53T59 392 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 UNC5CLQ8IV45 518 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 RTF1Q92541 710 aaKnown RBP13.87□□□□□ -0.19
SRP54-213ENST00000556994 LRRCC1Q9C099 1032 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 MON2Q7Z3U7 1717 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 MX1P20591 662 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 MAP3K19Q56UN5 1328 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 C3P01024 1663 aa13.87□□□□□ -0.19
SRP54-213ENST00000556994 ZBTB7CA1YPR0 619 aa13.86□□□□□ -0.19
SRP54-213ENST00000556994 CHMLP26374 656 aa13.86□□□□□ -0.19
SRP54-213ENST00000556994 ZNF500O60304 480 aaPredicted RBP13.86□□□□□ -0.19
SRP54-213ENST00000556994 GADD45BO75293 160 aaPredicted RBP13.86□□□□□ -0.19
SRP54-213ENST00000556994 FKBP5Q13451 457 aaPredicted RBP13.86□□□□□ -0.19
SRP54-213ENST00000556994 IL25Q9H293 177 aa13.86□□□□□ -0.19
SRP54-213ENST00000556994 ZKSCAN5Q9Y2L8 839 aa13.86□□□□□ -0.19
SRP54-213ENST00000556994 SALL3Q9BXA9 1300 aa13.86□□□□□ -0.19
SRP54-213ENST00000556994 MAP4K4O95819 1239 aaPredicted RBP13.85□□□□□ -0.19
SRP54-213ENST00000556994 MCCP23508 829 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 CUL4AQ13619 759 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 MPNDQ8N594 471 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 PDCL3Q9H2J4 239 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 IL1RAPL2Q9NP60 686 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 FAM13BQ9NYF5 915 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 NRXN3Q9Y4C0 1643 aa13.85□□□□□ -0.19
SRP54-213ENST00000556994 MBD3O95983 291 aa13.84□□□□□ -0.19
SRP54-213ENST00000556994 STK31Q9BXU1 1019 aa13.84□□□□□ -0.19
SRP54-213ENST00000556994 LRRFIP2Q9Y608 721 aaKnown RBP13.84□□□□□ -0.19
SRP54-213ENST00000556994 MCM2P49736 904 aa13.84□□□□□ -0.19
SRP54-213ENST00000556994 FLIIQ13045 1269 aa13.84□□□□□ -0.19
SRP54-213ENST00000556994 ITSN1Q15811 1721 aa13.83□□□□□ -0.19
SRP54-213ENST00000556994 RIMS1Q86UR5 1692 aaKnown RBP13.83□□□□□ -0.19
SRP54-213ENST00000556994 NRKQ7Z2Y5 1582 aa13.83□□□□□ -0.2
SRP54-213ENST00000556994 LARP6Q9BRS8 491 aaKnown RBP13.83□□□□□ -0.2
SRP54-213ENST00000556994 AKAP12Q02952 1782 aa13.83□□□□□ -0.2
SRP54-213ENST00000556994 ROBO2Q9HCK4 1378 aa13.83□□□□□ -0.2
SRP54-213ENST00000556994 PEAK1Q9H792 1746 aa13.83□□□□□ -0.2
SRP54-213ENST00000556994 UQCRHLA0A096LP55 91 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 UQCRHP07919 91 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 ATP8B2P98198 1209 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 FAM69CQ0P6D2 419 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 USP48Q86UV5 1035 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 NUTM1Q86Y26 1132 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 TSPY26PQ9H489 355 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 CCDC39Q9UFE4 941 aa13.82□□□□□ -0.2
SRP54-213ENST00000556994 DTNBO60941 627 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 PTMAP06454 111 aaKnown RBP13.81□□□□□ -0.2
SRP54-213ENST00000556994 GNAI3P08754 354 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 INTS4Q96HW7 963 aaKnown RBP13.81□□□□□ -0.2
SRP54-213ENST00000556994 EYA1Q99502 592 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 ARID3AQ99856 593 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 OVOS2A0A0J9YW53 1432 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 OVOS2Q6IE36 1432 aa13.81□□□□□ -0.2
SRP54-213ENST00000556994 ANAPC15P60006 121 aa13.8□□□□□ -0.2
SRP54-213ENST00000556994 PKNOX2Q96KN3 472 aa13.8□□□□□ -0.2
SRP54-213ENST00000556994 SPATA31D1Q6ZQQ2 1576 aa13.8□□□□□ -0.2
SRP54-213ENST00000556994 TERF1P54274 439 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 ZNF830Q96NB3 372 aaPredicted RBP13.79□□□□□ -0.2
SRP54-213ENST00000556994 USP44Q9H0E7 712 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 TCHHQ07283 1943 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 AMPHP49418 695 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 SIRT1Q96EB6 747 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 STAP2Q9UGK3 403 aa13.79□□□□□ -0.2
SRP54-213ENST00000556994 SRCIN1Q9C0H9 1055 aa13.78□□□□□ -0.2
SRP54-213ENST00000556994 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.78□□□□□ -0.2
SRP54-213ENST00000556994 USP6P35125 1406 aa13.78□□□□□ -0.2
SRP54-213ENST00000556994 SYAP1Q96A49 352 aaPredicted RBP13.78□□□□□ -0.2
SRP54-213ENST00000556994 PHAXQ9H814 394 aaKnown RBP13.78□□□□□ -0.2
SRP54-213ENST00000556994 PPP6R1Q9UPN7 881 aa13.78□□□□□ -0.2
SRP54-213ENST00000556994 CNPY2Q9Y2B0 182 aa13.78□□□□□ -0.2
SRP54-213ENST00000556994 ARHGEF10O15013 1369 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 PLEKHG3A1L390 1219 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 SURF6O75683 361 aaKnown RBP13.77□□□□□ -0.21
SRP54-213ENST00000556994 UBTFL1P0CB47 393 aaPredicted RBP13.77□□□□□ -0.21
SRP54-213ENST00000556994 MCM5P33992 734 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 CSPP1Q1MSJ5 1256 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 ESF1Q9H501 851 aaKnown RBP13.77□□□□□ -0.21
SRP54-213ENST00000556994 TUBGCP6Q96RT7 1819 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 RGPD1P0DJD0 1748 aa13.77□□□□□ -0.21
SRP54-213ENST00000556994 WDR33Q9C0J8 1336 aaKnown RBP13.77□□□□□ -0.21
SRP54-213ENST00000556994 HSPA4P34932 840 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 USP25Q9UHP3 1055 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 TSPOAP1O95153 1857 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 TECPR2O15040 1411 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 CPA1P15085 419 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 PPP1R42Q7Z4L9 355 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 CEP170BQ9Y4F5 1589 aaPredicted RBP13.76□□□□□ -0.21
SRP54-213ENST00000556994 USP31Q70CQ4 1352 aa13.76□□□□□ -0.21
SRP54-213ENST00000556994 GNAT3A8MTJ3 354 aa13.75□□□□□ -0.21
SRP54-213ENST00000556994 HDGFP51858 240 aaKnown RBP13.75□□□□□ -0.21
SRP54-213ENST00000556994 RASEFQ8IZ41 740 aa13.75□□□□□ -0.21
SRP54-213ENST00000556994 JARID2Q92833 1246 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms