RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 CCDC158Q5M9N0 1113 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 TMEM132EQ6IEE7 984 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 CEP131Q9UPN4 1083 aa20.45■□□□□ 0.86
SYNE3-204ENST00000555759 ZNF397Q8NF99 534 aaPredicted RBP20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SRGAP3O43295 1099 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SEPT7Q16181 437 aaKnown RBP20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SRRTQ9BXP5 876 aaKnown RBP20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SUPT6HQ7KZ85 1726 aaKnown RBP20.44■□□□□ 0.86
SYNE3-204ENST00000555759 CKAP2LQ8IYA6 745 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 NEFHP12036 1026 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 IRX3P78415 501 aaPredicted RBP20.44■□□□□ 0.86
SYNE3-204ENST00000555759 RAB3GAP1Q15042 981 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SYCP1Q15431 976 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 TAX1BP1Q86VP1 789 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 SMC5Q8IY18 1101 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 KIF1BPQ96EK5 621 aa20.44■□□□□ 0.86
SYNE3-204ENST00000555759 HCLS1P14317 486 aaPredicted RBP20.43■□□□□ 0.86
SYNE3-204ENST00000555759 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
SYNE3-204ENST00000555759 AACSQ86V21 672 aa20.43■□□□□ 0.86
SYNE3-204ENST00000555759 RRAGDQ9NQL2 400 aaPredicted RBP20.43■□□□□ 0.86
SYNE3-204ENST00000555759 ZFYVE27Q5T4F4 411 aa20.43■□□□□ 0.86
SYNE3-204ENST00000555759 EIF5P55010 431 aaKnown RBP20.43■□□□□ 0.86
SYNE3-204ENST00000555759 KDM4AO75164 1064 aa20.42■□□□□ 0.86
SYNE3-204ENST00000555759 MNAT1P51948 309 aa20.42■□□□□ 0.86
SYNE3-204ENST00000555759 CCDC69A6NI79 296 aa20.42■□□□□ 0.86
SYNE3-204ENST00000555759 SPA17Q15506 151 aa20.42■□□□□ 0.86
SYNE3-204ENST00000555759 ARFGAP3Q9NP61 516 aa20.42■□□□□ 0.86
SYNE3-204ENST00000555759 FAM200AQ8TCP9 573 aa20.41■□□□□ 0.86
SYNE3-204ENST00000555759 ZSCAN25Q6NSZ9 544 aa20.41■□□□□ 0.86
SYNE3-204ENST00000555759 IL1RAPL2Q9NP60 686 aa20.41■□□□□ 0.86
SYNE3-204ENST00000555759 SLC3A2P08195 630 aaKnown RBP20.41■□□□□ 0.86
SYNE3-204ENST00000555759 TMC6Q7Z403 805 aa20.41■□□□□ 0.86
SYNE3-204ENST00000555759 SLU7O95391 586 aaKnown RBP20.4■□□□□ 0.86
SYNE3-204ENST00000555759 TRIM27P14373 513 aa20.4■□□□□ 0.86
SYNE3-204ENST00000555759 RNF187Q5TA31 235 aaPredicted RBP20.4■□□□□ 0.86
SYNE3-204ENST00000555759 PRPF40BQ6NWY9 871 aaKnown RBP20.4■□□□□ 0.86
SYNE3-204ENST00000555759 LUZP1Q86V48 1076 aa20.4■□□□□ 0.86
SYNE3-204ENST00000555759 HMGB1P09429 215 aaKnown RBP20.4■□□□□ 0.86
SYNE3-204ENST00000555759 GDPD2Q9HCC8 539 aa20.4■□□□□ 0.86
SYNE3-204ENST00000555759 GOLGA6L10A0A0M3HER8 536 aa20.39■□□□□ 0.86
SYNE3-204ENST00000555759 TTC39AQ5SRH9 613 aa20.39■□□□□ 0.86
SYNE3-204ENST00000555759 IPO4Q8TEX9 1081 aaKnown RBP20.39■□□□□ 0.85
SYNE3-204ENST00000555759 RAPGEF4Q8WZA2 1011 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 EXOC6BQ9Y2D4 811 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 PAFAH1B1P43034 410 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 CCDC57Q2TAC2 916 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 NACAP1Q9BZK3 213 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 TANGO6Q9C0B7 1094 aa20.39■□□□□ 0.85
SYNE3-204ENST00000555759 MAP2K1Q02750 393 aaPredicted RBP20.38■□□□□ 0.85
SYNE3-204ENST00000555759 PRDM2Q13029 1718 aa20.38■□□□□ 0.85
SYNE3-204ENST00000555759 NSD3Q9BZ95 1437 aa20.38■□□□□ 0.85
SYNE3-204ENST00000555759 TUBB4BP68371 445 aa20.38■□□□□ 0.85
SYNE3-204ENST00000555759 NUCB1Q02818 461 aa20.38■□□□□ 0.85
SYNE3-204ENST00000555759 SULT6B1Q6IMI4 303 aa20.38■□□□□ 0.85
SYNE3-204ENST00000555759 PRIM1P49642 420 aaKnown RBP20.37■□□□□ 0.85
SYNE3-204ENST00000555759 TTC22Q5TAA0 569 aa20.37■□□□□ 0.85
SYNE3-204ENST00000555759 ATAD2Q6PL18 1390 aa20.37■□□□□ 0.85
SYNE3-204ENST00000555759 ZSCAN22P10073 491 aaPredicted RBP20.37■□□□□ 0.85
SYNE3-204ENST00000555759 GJB2P29033 226 aa20.37■□□□□ 0.85
SYNE3-204ENST00000555759 ZNF830Q96NB3 372 aaPredicted RBP20.37■□□□□ 0.85
SYNE3-204ENST00000555759 SKILP12757 684 aa20.36■□□□□ 0.85
SYNE3-204ENST00000555759 EZRP15311 586 aaKnown RBP20.36■□□□□ 0.85
SYNE3-204ENST00000555759 PLEKHO1Q53GL0 409 aaPredicted RBP20.36■□□□□ 0.85
SYNE3-204ENST00000555759 CCDC186Q7Z3E2 898 aa20.36■□□□□ 0.85
SYNE3-204ENST00000555759 FSIP1Q8NA03 581 aa20.36■□□□□ 0.85
SYNE3-204ENST00000555759 RAD21O60216 631 aa20.36■□□□□ 0.85
SYNE3-204ENST00000555759 USO1O60763 962 aaKnown RBP20.36■□□□□ 0.85
SYNE3-204ENST00000555759 KRT18P05783 430 aaKnown RBP20.36■□□□□ 0.85
SYNE3-204ENST00000555759 TMX3Q96JJ7 454 aa20.36■□□□□ 0.85
SYNE3-204ENST00000555759 YEATS4O95619 227 aa20.35■□□□□ 0.85
SYNE3-204ENST00000555759 U3KPZ7 1027 aaPredicted RBP20.35■□□□□ 0.85
SYNE3-204ENST00000555759 HECW1Q76N89 1606 aa20.35■□□□□ 0.85
SYNE3-204ENST00000555759 RAD54L2Q9Y4B4 1467 aa20.35■□□□□ 0.85
SYNE3-204ENST00000555759 SMARCA5O60264 1052 aaPredicted RBP20.35■□□□□ 0.85
SYNE3-204ENST00000555759 NUTM1Q86Y26 1132 aa20.35■□□□□ 0.85
SYNE3-204ENST00000555759 GNG11P61952 73 aa20.35■□□□□ 0.85
SYNE3-204ENST00000555759 NAA15Q9BXJ9 866 aaKnown RBP20.35■□□□□ 0.85
SYNE3-204ENST00000555759 ANAPC15P60006 121 aa20.34■□□□□ 0.85
SYNE3-204ENST00000555759 RAI14Q9P0K7 980 aa20.34■□□□□ 0.85
SYNE3-204ENST00000555759 GABPB1Q06547 395 aaPredicted RBP20.34■□□□□ 0.85
SYNE3-204ENST00000555759 ZNF692Q9BU19 519 aaPredicted RBP20.34■□□□□ 0.85
SYNE3-204ENST00000555759 NF2P35240 595 aa20.34■□□□□ 0.85
SYNE3-204ENST00000555759 GIMAP6Q6P9H5 292 aa20.34■□□□□ 0.85
SYNE3-204ENST00000555759 RPRD2Q5VT52 1461 aaKnown RBP20.34■□□□□ 0.85
SYNE3-204ENST00000555759 V9GYY5 206 aaPredicted RBP20.33■□□□□ 0.85
SYNE3-204ENST00000555759 TTC12Q9H892 705 aaPredicted RBP20.33■□□□□ 0.85
SYNE3-204ENST00000555759 TOP2BQ02880 1626 aa20.33■□□□□ 0.84
SYNE3-204ENST00000555759 C8orf76Q96K31 380 aa20.33■□□□□ 0.84
SYNE3-204ENST00000555759 RASSF4Q9H2L5 321 aa20.33■□□□□ 0.84
SYNE3-204ENST00000555759 ZSCAN16Q9H4T2 348 aaPredicted RBP20.33■□□□□ 0.84
SYNE3-204ENST00000555759 NCAPD3P42695 1498 aa20.33■□□□□ 0.84
SYNE3-204ENST00000555759 SMC1AQ14683 1233 aaKnown RBP20.32■□□□□ 0.84
SYNE3-204ENST00000555759 TICAM2Q86XR7 235 aa20.32■□□□□ 0.84
SYNE3-204ENST00000555759 CCDC12Q8WUD4 166 aaPredicted RBP20.32■□□□□ 0.84
SYNE3-204ENST00000555759 EHBP1Q8NDI1 1231 aa20.32■□□□□ 0.84
SYNE3-204ENST00000555759 CCDC175P0C221 793 aa20.32■□□□□ 0.84
SYNE3-204ENST00000555759 IL16Q14005 1332 aa20.32■□□□□ 0.84
SYNE3-204ENST00000555759 GBP2P32456 591 aaPredicted RBP20.32■□□□□ 0.84
SYNE3-204ENST00000555759 FKBP15Q5T1M5 1219 aa20.32■□□□□ 0.84
SYNE3-204ENST00000555759 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms