RNA–Protein interactions for RNA: ENST00000553370.5

ACTN1-208, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 605 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-208ENST00000553370 COL23A1Q86Y22 540 aaPredicted RBP13.65□□□□□ -0.22
ACTN1-208ENST00000553370 NLGN2Q8NFZ4 835 aa13.65□□□□□ -0.22
ACTN1-208ENST00000553370 SPOCK2Q92563 424 aa13.64□□□□□ -0.23
ACTN1-208ENST00000553370 CARD14Q9BXL6 1004 aa13.64□□□□□ -0.23
ACTN1-208ENST00000553370 TMOD3Q9NYL9 352 aa13.64□□□□□ -0.23
ACTN1-208ENST00000553370 SENP3-EIF4A1A0A087X0R7 540 aa13.63□□□□□ -0.23
ACTN1-208ENST00000553370 CYP27B1O15528 508 aa13.63□□□□□ -0.23
ACTN1-208ENST00000553370 GRIN3BO60391 1043 aa13.63□□□□□ -0.23
ACTN1-208ENST00000553370 GIGYF1O75420 1035 aaPredicted RBP13.63□□□□□ -0.23
ACTN1-208ENST00000553370 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
ACTN1-208ENST00000553370 VIRMAQ69YN4 1812 aaKnown RBP13.62□□□□□ -0.23
ACTN1-208ENST00000553370 WASHC2AQ641Q2 1341 aa13.61□□□□□ -0.23
ACTN1-208ENST00000553370 IFNL2Q8IZJ0 200 aa13.6□□□□□ -0.23
ACTN1-208ENST00000553370 CLSPNQ9HAW4 1339 aa13.6□□□□□ -0.23
ACTN1-208ENST00000553370 NCAPD2Q15021 1401 aa13.59□□□□□ -0.23
ACTN1-208ENST00000553370 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
ACTN1-208ENST00000553370 PIGBQ92521 554 aa13.59□□□□□ -0.23
ACTN1-208ENST00000553370 EYA1Q99502 592 aa13.59□□□□□ -0.23
ACTN1-208ENST00000553370 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.58□□□□□ -0.24
ACTN1-208ENST00000553370 LOC102724428A0A0B4J2F2 783 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 GNPATO15228 680 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 ATP6V1AP38606 617 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 SIK1P57059 783 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 C1QTNF8P60827 252 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 CD2APQ9Y5K6 639 aa13.58□□□□□ -0.24
ACTN1-208ENST00000553370 COL5A3P25940 1745 aaPredicted RBP13.57□□□□□ -0.24
ACTN1-208ENST00000553370 YBX3P16989 372 aaKnown RBP eCLIP13.57□□□□□ -0.243e-6■■■■□ 24.3
ACTN1-208ENST00000553370 SSFA2P28290 1259 aa13.57□□□□□ -0.24
ACTN1-208ENST00000553370 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.247e-7■■■□□ 15.2
ACTN1-208ENST00000553370 POLKQ9UBT6 870 aa13.57□□□□□ -0.24
ACTN1-208ENST00000553370 WWC3Q9ULE0 1092 aa13.57□□□□□ -0.24
ACTN1-208ENST00000553370 N4BP2Q86UW6 1770 aaPredicted RBP13.57□□□□□ -0.24
ACTN1-208ENST00000553370 PHKG2P15735 406 aa13.56□□□□□ -0.24
ACTN1-208ENST00000553370 EIF4A2Q14240 407 aaKnown RBP13.56□□□□□ -0.24
ACTN1-208ENST00000553370 NKX1-1Q15270 411 aaPredicted RBP13.56□□□□□ -0.24
ACTN1-208ENST00000553370 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
ACTN1-208ENST00000553370 ECM2O94769 699 aaPredicted RBP13.55□□□□□ -0.24
ACTN1-208ENST00000553370 HSP90AB1P08238 724 aaKnown RBP13.55□□□□□ -0.24
ACTN1-208ENST00000553370 ZNF530Q6P9A1 599 aaPredicted RBP13.55□□□□□ -0.24
ACTN1-208ENST00000553370 MORC1Q86VD1 984 aa13.55□□□□□ -0.24
ACTN1-208ENST00000553370 LINC00116Q8NCU8 138 aa13.55□□□□□ -0.24
ACTN1-208ENST00000553370 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
ACTN1-208ENST00000553370 ASAP1Q9ULH1 1129 aa13.55□□□□□ -0.24
ACTN1-208ENST00000553370 SCN11AQ9UI33 1791 aa13.55□□□□□ -0.24
ACTN1-208ENST00000553370 ZNF831Q5JPB2 1677 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 C4AP0C0L4 1744 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
ACTN1-208ENST00000553370 PLEKHO1Q53GL0 409 aaPredicted RBP13.54□□□□□ -0.24
ACTN1-208ENST00000553370 C1orf141Q5JVX7 400 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 PANK3Q9H999 370 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 KIF13BQ9NQT8 1826 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 IGSF1Q8N6C5 1336 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 MYH14Q7Z406 1995 aaKnown RBP13.54□□□□□ -0.24
ACTN1-208ENST00000553370 ATP10DQ9P241 1426 aa13.54□□□□□ -0.24
ACTN1-208ENST00000553370 SMIM5Q71RC9 77 aa13.53□□□□□ -0.24
ACTN1-208ENST00000553370 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
ACTN1-208ENST00000553370 ZNF526Q8TF50 670 aaPredicted RBP13.53□□□□□ -0.24
ACTN1-208ENST00000553370 PLEKHG2Q9H7P9 1386 aa13.53□□□□□ -0.24
ACTN1-208ENST00000553370 CICQ96RK0 1608 aaPredicted RBP13.53□□□□□ -0.24
ACTN1-208ENST00000553370 CEP350Q5VT06 3117 aa13.52□□□□□ -0.24
ACTN1-208ENST00000553370 CABP4P57796 275 aa13.52□□□□□ -0.25
ACTN1-208ENST00000553370 PLCD3Q8N3E9 789 aa13.52□□□□□ -0.25
ACTN1-208ENST00000553370 GPBP1L1Q9HC44 474 aaPredicted RBP13.52□□□□□ -0.25
ACTN1-208ENST00000553370 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.25
ACTN1-208ENST00000553370 RTCBQ9Y3I0 505 aaKnown RBP13.52□□□□□ -0.25
ACTN1-208ENST00000553370 KNSTRNQ9Y448 316 aa13.52□□□□□ -0.25
ACTN1-208ENST00000553370 SPDYE2BA6NHP3 402 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 ERVV-2B6SEH9 535 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 SPDYE6P0CI01 402 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 ITPK1Q13572 414 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 SPDYE2Q495Y8 402 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 AMOTQ4VCS5 1084 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 AMIGO3Q86WK7 504 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 DCAF5Q96JK2 942 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 ATG3Q9NT62 314 aa13.51□□□□□ -0.25
ACTN1-208ENST00000553370 MMP10P09238 476 aa13.5□□□□□ -0.25
ACTN1-208ENST00000553370 TRAPPC3LQ5T215 181 aa13.5□□□□□ -0.25
ACTN1-208ENST00000553370 BBXQ8WY36 941 aaPredicted RBP13.5□□□□□ -0.25
ACTN1-208ENST00000553370 BRCA1P38398 1863 aaKnown RBP13.49□□□□□ -0.25
ACTN1-208ENST00000553370 RFC4P35249 363 aa13.49□□□□□ -0.25
ACTN1-208ENST00000553370 MTHFSP49914 203 aa13.49□□□□□ -0.25
ACTN1-208ENST00000553370 ARFGEF1Q9Y6D6 1849 aa13.48□□□□□ -0.25
ACTN1-208ENST00000553370 KDRP35968 1356 aa13.48□□□□□ -0.25
ACTN1-208ENST00000553370 TJP1Q07157 1748 aa13.48□□□□□ -0.25
ACTN1-208ENST00000553370 KDM6AO15550 1401 aaPredicted RBP13.47□□□□□ -0.25
ACTN1-208ENST00000553370 PTCD1O75127 700 aaKnown RBP13.47□□□□□ -0.25
ACTN1-208ENST00000553370 SULT6B1Q6IMI4 303 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 NLGN1Q8N2Q7 840 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 CCDC87Q9NVE4 849 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 SSUH2Q9Y2M2 353 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 PARP3Q9Y6F1 533 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 KIAA1551Q9HCM1 1747 aa13.47□□□□□ -0.25
ACTN1-208ENST00000553370 CNTNAP4Q9C0A0 1308 aa13.46□□□□□ -0.25
ACTN1-208ENST00000553370 AEBP1Q8IUX7 1158 aa13.46□□□□□ -0.25
ACTN1-208ENST00000553370 BCS1LQ9Y276 419 aa13.46□□□□□ -0.25
ACTN1-208ENST00000553370 PXDNLA1KZ92 1463 aa13.45□□□□□ -0.26
ACTN1-208ENST00000553370 MIER1Q8N108 512 aa13.44□□□□□ -0.26
ACTN1-208ENST00000553370 ARHGEF1Q92888 912 aaKnown RBP13.44□□□□□ -0.26
ACTN1-208ENST00000553370 C10orf71Q711Q0 1435 aa13.44□□□□□ -0.26
ACTN1-208ENST00000553370 ADCY9O60503 1353 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms