RNA–Protein interactions for RNA: ENST00000552645.5

LETMD1-234, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best)

Gene LETMD1, Length 1,623 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-234ENST00000552645 DCTN1Q14203 1278 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 NFE2L2Q16236 605 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 MCM10Q7L590 875 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 RUNDC1Q96C34 613 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 RGPD3A6NKT7 1758 aaPredicted RBP13.09□□□□□ -0.31
LETMD1-234ENST00000552645 RGPD4Q7Z3J3 1758 aa13.09□□□□□ -0.31
LETMD1-234ENST00000552645 KCNQ4P56696 695 aa13.09□□□□□ -0.31
LETMD1-234ENST00000552645 TEFQ10587 303 aa13.09□□□□□ -0.31
LETMD1-234ENST00000552645 PNISRQ8TF01 805 aaKnown RBP13.09□□□□□ -0.31
LETMD1-234ENST00000552645 ASAP1Q9ULH1 1129 aa13.09□□□□□ -0.31
LETMD1-234ENST00000552645 RREB1Q92766 1687 aa13.08□□□□□ -0.32
LETMD1-234ENST00000552645 TXNRD1Q16881 649 aa13.08□□□□□ -0.32
LETMD1-234ENST00000552645 IL17REQ8NFR9 667 aa13.08□□□□□ -0.32
LETMD1-234ENST00000552645 SLC52A2Q9HAB3 445 aa13.08□□□□□ -0.32
LETMD1-234ENST00000552645 NUP188Q5SRE5 1749 aa13.08□□□□□ -0.32
LETMD1-234ENST00000552645 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
LETMD1-234ENST00000552645 LY75O60449 1722 aa13.07□□□□□ -0.32
LETMD1-234ENST00000552645 RIPK4P57078 832 aa13.07□□□□□ -0.32
LETMD1-234ENST00000552645 ADAMTS7Q9UKP4 1686 aa13.07□□□□□ -0.32
LETMD1-234ENST00000552645 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
LETMD1-234ENST00000552645 PROM2Q8N271 834 aa13.06□□□□□ -0.32
LETMD1-234ENST00000552645 SMARCC1Q92922 1105 aaPredicted RBP13.06□□□□□ -0.32
LETMD1-234ENST00000552645 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
LETMD1-234ENST00000552645 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
LETMD1-234ENST00000552645 APAF1O14727 1248 aa13.06□□□□□ -0.32
LETMD1-234ENST00000552645 THUMPD2Q9BTF0 503 aaKnown RBP13.06□□□□□ -0.32
LETMD1-234ENST00000552645 ATG3Q9NT62 314 aa13.06□□□□□ -0.32
LETMD1-234ENST00000552645 PTCD1O75127 700 aaKnown RBP13.05□□□□□ -0.32
LETMD1-234ENST00000552645 SLC39A6Q13433 755 aa13.05□□□□□ -0.32
LETMD1-234ENST00000552645 SIPA1L3O60292 1781 aaPredicted RBP13.05□□□□□ -0.32
LETMD1-234ENST00000552645 MRC1P22897 1456 aa13.04□□□□□ -0.32
LETMD1-234ENST00000552645 LRRC4BQ9NT99 713 aa13.04□□□□□ -0.32
LETMD1-234ENST00000552645 RBM19Q9Y4C8 960 aaKnown RBP13.04□□□□□ -0.32
LETMD1-234ENST00000552645 PSDA5PKW4 1024 aaPredicted RBP13.03□□□□□ -0.32
LETMD1-234ENST00000552645 CCER2I3L3R5 266 aa13.03□□□□□ -0.32
LETMD1-234ENST00000552645 HTATSF1O43719 755 aaKnown RBP13.03□□□□□ -0.32
LETMD1-234ENST00000552645 SLC27A3Q5K4L6 730 aa13.03□□□□□ -0.32
LETMD1-234ENST00000552645 NBPF14Q5TI25 921 aa13.03□□□□□ -0.32
LETMD1-234ENST00000552645 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
LETMD1-234ENST00000552645 C5P01031 1676 aa13.03□□□□□ -0.32
LETMD1-234ENST00000552645 LOC102724428A0A0B4J2F2 783 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 BTBD11A6QL63 1104 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 ATP6V1AP38606 617 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 SIK1P57059 783 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 LMOD3Q0VAK6 560 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 TTC5Q8N0Z6 440 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 SALL2Q9Y467 1007 aaPredicted RBP13.02□□□□□ -0.32
LETMD1-234ENST00000552645 TAF1LQ8IZX4 1826 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 FANCIQ9NVI1 1328 aa13.02□□□□□ -0.32
LETMD1-234ENST00000552645 R3HDM1Q15032 1099 aaKnown RBP13.02□□□□□ -0.33
LETMD1-234ENST00000552645 MIS18AQ9NYP9 233 aa13.02□□□□□ -0.33
LETMD1-234ENST00000552645 PAPPAQ13219 1627 aa13.01□□□□□ -0.33
LETMD1-234ENST00000552645 STK32BQ9NY57 414 aa13.01□□□□□ -0.33
LETMD1-234ENST00000552645 LAS1LQ9Y4W2 734 aaKnown RBP13.01□□□□□ -0.33
LETMD1-234ENST00000552645 TAF7Q15545 349 aaPredicted RBP13□□□□□ -0.33
LETMD1-234ENST00000552645 ANO8Q9HCE9 1232 aaPredicted RBP13□□□□□ -0.33
LETMD1-234ENST00000552645 KCNQ3O43525 872 aa12.99□□□□□ -0.33
LETMD1-234ENST00000552645 ZNF790Q6PG37 636 aa12.99□□□□□ -0.33
LETMD1-234ENST00000552645 TRIM35Q9UPQ4 493 aa12.99□□□□□ -0.33
LETMD1-234ENST00000552645 UBR2Q8IWV8 1755 aa12.99□□□□□ -0.33
LETMD1-234ENST00000552645 ITPK1Q13572 414 aa12.99□□□□□ -0.33
LETMD1-234ENST00000552645 C4BP0C0L5 1744 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 ZNF827Q17R98 1081 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 LINC00116Q8NCU8 138 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 ZNF496Q96IT1 587 aaPredicted RBP12.98□□□□□ -0.33
LETMD1-234ENST00000552645 SLC4A9Q96Q91 983 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 TFCP2L1Q9NZI6 479 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
LETMD1-234ENST00000552645 TUBGCP6Q96RT7 1819 aa12.97□□□□□ -0.33
LETMD1-234ENST00000552645 SLC15A2Q16348 729 aa12.97□□□□□ -0.33
LETMD1-234ENST00000552645 AK7Q96M32 723 aa12.97□□□□□ -0.33
LETMD1-234ENST00000552645 TSPYL4Q9UJ04 414 aa12.97□□□□□ -0.33
LETMD1-234ENST00000552645 TJP1Q07157 1748 aa12.97□□□□□ -0.33
LETMD1-234ENST00000552645 KDM3BQ7LBC6 1761 aa12.96□□□□□ -0.33
LETMD1-234ENST00000552645 MSH5O43196 834 aa12.96□□□□□ -0.33
LETMD1-234ENST00000552645 FMNL2Q96PY5 1086 aa12.96□□□□□ -0.33
LETMD1-234ENST00000552645 COL5A3P25940 1745 aaPredicted RBP12.96□□□□□ -0.33
LETMD1-234ENST00000552645 ZNF831Q5JPB2 1677 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 PHF14O94880 888 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 DNAJC10Q8IXB1 793 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 MYH14Q7Z406 1995 aaKnown RBP12.95□□□□□ -0.34
LETMD1-234ENST00000552645 GNPATO15228 680 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 SMIM5Q71RC9 77 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 AKT1S1Q96B36 256 aa12.95□□□□□ -0.34
LETMD1-234ENST00000552645 HMGB2P26583 209 aaKnown RBP12.94□□□□□ -0.34
LETMD1-234ENST00000552645 PDGFDQ9GZP0 370 aaPredicted RBP12.94□□□□□ -0.34
LETMD1-234ENST00000552645 HEG1Q9ULI3 1381 aa12.94□□□□□ -0.34
LETMD1-234ENST00000552645 UBR3Q6ZT12 1888 aa12.93□□□□□ -0.34
LETMD1-234ENST00000552645 NEFLP07196 543 aa12.93□□□□□ -0.34
LETMD1-234ENST00000552645 CALD1Q05682 793 aaKnown RBP12.93□□□□□ -0.34
LETMD1-234ENST00000552645 WWC1Q8IX03 1113 aa12.93□□□□□ -0.34
LETMD1-234ENST00000552645 PRAMEF22A3QJZ6 481 aa12.92□□□□□ -0.34
LETMD1-234ENST00000552645 CRKLP46109 303 aaKnown RBP12.92□□□□□ -0.34
LETMD1-234ENST00000552645 FKBP8Q14318 412 aa12.92□□□□□ -0.34
LETMD1-234ENST00000552645 VSIG10Q8N0Z9 540 aa12.92□□□□□ -0.34
LETMD1-234ENST00000552645 STARD3NLO95772 234 aa12.91□□□□□ -0.34
LETMD1-234ENST00000552645 SNRPA1P09661 255 aaKnown RBP12.91□□□□□ -0.34
LETMD1-234ENST00000552645 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
LETMD1-234ENST00000552645 PNPLA7Q6ZV29 1317 aa12.91□□□□□ -0.34
LETMD1-234ENST00000552645 CICQ96RK0 1608 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms