RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 NEUROD2Q15784 382 aa21.4■■□□□ 1.02
CHMP1A-209ENST00000550872 FAM9BQ8IZU0 186 aa21.4■■□□□ 1.02
CHMP1A-209ENST00000550872 MIER1Q8N108 512 aa21.4■■□□□ 1.02
CHMP1A-209ENST00000550872 ASAP1Q9ULH1 1129 aa21.4■■□□□ 1.02
CHMP1A-209ENST00000550872 RRP7AQ9Y3A4 280 aaKnown RBP21.4■■□□□ 1.02
CHMP1A-209ENST00000550872 PALLDQ8WX93 1383 aa21.39■■□□□ 1.02
CHMP1A-209ENST00000550872 ATG3Q9NT62 314 aa21.39■■□□□ 1.01
CHMP1A-209ENST00000550872 VIRMAQ69YN4 1812 aaKnown RBP21.39■■□□□ 1.01
CHMP1A-209ENST00000550872 ADAMTS7Q9UKP4 1686 aa21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 CEMIPQ8WUJ3 1361 aa21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 APAF1O14727 1248 aa21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 RGPD3A6NKT7 1758 aaPredicted RBP21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 RGPD4Q7Z3J3 1758 aa21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 DLG5Q8TDM6 1919 aa21.37■■□□□ 1.01
CHMP1A-209ENST00000550872 SLC27A3Q5K4L6 730 aa21.36■■□□□ 1.01
CHMP1A-209ENST00000550872 CCNL1Q9UK58 526 aaPredicted RBP21.36■■□□□ 1.01
CHMP1A-209ENST00000550872 MRC1P22897 1456 aa21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 PSDA5PKW4 1024 aaPredicted RBP21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 KCNQ4P56696 695 aa21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 LMOD3Q0VAK6 560 aa21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 RBM42Q9BTD8 480 aaKnown RBP21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 LRRC4BQ9NT99 713 aa21.35■■□□□ 1.01
CHMP1A-209ENST00000550872 SLC39A6Q13433 755 aa21.34■■□□□ 1.01
CHMP1A-209ENST00000550872 NBPF14Q5TI25 921 aa21.34■■□□□ 1.01
CHMP1A-209ENST00000550872 THUMPD2Q9BTF0 503 aaKnown RBP21.34■■□□□ 1.01
CHMP1A-209ENST00000550872 LOC102724428A0A0B4J2F2 783 aa21.33■■□□□ 1.01
CHMP1A-209ENST00000550872 SIK1P57059 783 aa21.33■■□□□ 1.01
CHMP1A-209ENST00000550872 RREB1Q92766 1687 aa21.33■■□□□ 1
CHMP1A-209ENST00000550872 BTBD11A6QL63 1104 aa21.32■■□□□ 1
CHMP1A-209ENST00000550872 PTCD1O75127 700 aaKnown RBP21.32■■□□□ 1
CHMP1A-209ENST00000550872 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
CHMP1A-209ENST00000550872 LY75O60449 1722 aa21.32■■□□□ 1
CHMP1A-209ENST00000550872 TTC5Q8N0Z6 440 aa21.31■■□□□ 1
CHMP1A-209ENST00000550872 SENP3-EIF4A1A0A087X0R7 540 aa21.3■■□□□ 1
CHMP1A-209ENST00000550872 ATP6V1AP38606 617 aa21.3■■□□□ 1
CHMP1A-209ENST00000550872 R3HDM1Q15032 1099 aaKnown RBP21.3■■□□□ 1
CHMP1A-209ENST00000550872 TRIM35Q9UPQ4 493 aa21.3■■□□□ 1
CHMP1A-209ENST00000550872 NUP188Q5SRE5 1749 aa21.29■■□□□ 1
CHMP1A-209ENST00000550872 HMGB2P26583 209 aaKnown RBP21.28■■□□□ 1
CHMP1A-209ENST00000550872 ZNF790Q6PG37 636 aa21.28■■□□□ 1
CHMP1A-209ENST00000550872 STK32BQ9NY57 414 aa21.28■■□□□ 1
CHMP1A-209ENST00000550872 SLC4A9Q96Q91 983 aa21.27■■□□□ 1
CHMP1A-209ENST00000550872 ANO8Q9HCE9 1232 aaPredicted RBP21.27■■□□□ 1
CHMP1A-209ENST00000550872 MIS18AQ9NYP9 233 aa21.27■■□□□ 1
CHMP1A-209ENST00000550872 SIPA1L3O60292 1781 aaPredicted RBP21.27■■□□□ 1
CHMP1A-209ENST00000550872 KCNQ3O43525 872 aa21.26■□□□□ 0.99
CHMP1A-209ENST00000550872 ITPK1Q13572 414 aa21.26■□□□□ 0.99
CHMP1A-209ENST00000550872 SLC15A2Q16348 729 aa21.25■□□□□ 0.99
CHMP1A-209ENST00000550872 ZNF496Q96IT1 587 aaPredicted RBP21.24■□□□□ 0.99
CHMP1A-209ENST00000550872 SALL2Q9Y467 1007 aaPredicted RBP21.24■□□□□ 0.99
CHMP1A-209ENST00000550872 PAPPAQ13219 1627 aa21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 ZNF827Q17R98 1081 aa21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 LINC00116Q8NCU8 138 aa21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 AKT1S1Q96B36 256 aa21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 FMNL2Q96PY5 1086 aa21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 LAS1LQ9Y4W2 734 aaKnown RBP21.23■□□□□ 0.99
CHMP1A-209ENST00000550872 KCPQ6ZWJ8 1503 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 CALD1Q05682 793 aaKnown RBP21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 CCDC27Q2M243 656 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 NCBP3Q53F19 620 aaKnown RBP21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 DNAJC10Q8IXB1 793 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 VSIG10Q8N0Z9 540 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 TFCP2L1Q9NZI6 479 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 TSPYL4Q9UJ04 414 aa21.21■□□□□ 0.99
CHMP1A-209ENST00000550872 TAF1LQ8IZX4 1826 aa21.2■□□□□ 0.98
CHMP1A-209ENST00000550872 AK7Q96M32 723 aa21.2■□□□□ 0.98
CHMP1A-209ENST00000550872 BABAM1Q9NWV8 329 aa21.2■□□□□ 0.98
CHMP1A-209ENST00000550872 C5P01031 1676 aa21.2■□□□□ 0.98
CHMP1A-209ENST00000550872 HEG1Q9ULI3 1381 aa21.2■□□□□ 0.98
CHMP1A-209ENST00000550872 WWC1Q8IX03 1113 aa21.19■□□□□ 0.98
CHMP1A-209ENST00000550872 ZNF831Q5JPB2 1677 aa21.18■□□□□ 0.98
CHMP1A-209ENST00000550872 UBR2Q8IWV8 1755 aa21.18■□□□□ 0.98
CHMP1A-209ENST00000550872 CHL1O00533 1208 aa21.18■□□□□ 0.98
CHMP1A-209ENST00000550872 NGEFQ8N5V2 710 aa21.18■□□□□ 0.98
CHMP1A-209ENST00000550872 TEX13AQ9BXU3 409 aaPredicted RBP21.18■□□□□ 0.98
CHMP1A-209ENST00000550872 EIF4A1P60842 406 aaKnown RBP21.17■□□□□ 0.98
CHMP1A-209ENST00000550872 RC3H1Q5TC82 1133 aaKnown RBP21.17■□□□□ 0.98
CHMP1A-209ENST00000550872 CFAP44Q96MT7 982 aa21.17■□□□□ 0.98
CHMP1A-209ENST00000550872 C4BP0C0L5 1744 aa21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 GNPATO15228 680 aa21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 SNRPA1P09661 255 aaKnown RBP21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 CYP19A1P11511 503 aaPredicted RBP21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 CRKLP46109 303 aaKnown RBP21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 GNAI1P63096 354 aa21.16■□□□□ 0.98
CHMP1A-209ENST00000550872 CNTNAP4Q9C0A0 1308 aa21.15■□□□□ 0.98
CHMP1A-209ENST00000550872 STARD3NLO95772 234 aa21.15■□□□□ 0.98
CHMP1A-209ENST00000550872 IFT57Q9NWB7 429 aa21.15■□□□□ 0.98
CHMP1A-209ENST00000550872 KDM3BQ7LBC6 1761 aa21.15■□□□□ 0.98
CHMP1A-209ENST00000550872 TJP1Q07157 1748 aa21.15■□□□□ 0.98
CHMP1A-209ENST00000550872 USP16Q9Y5T5 823 aa21.14■□□□□ 0.97
CHMP1A-209ENST00000550872 PNPLA7Q6ZV29 1317 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 PRAMEF22A3QJZ6 481 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 MSH5O43196 834 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 PHF14O94880 888 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 ZNF853P0CG23 659 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 FLAD1Q8NFF5 587 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 CCDC87Q9NVE4 849 aa21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 RTCBQ9Y3I0 505 aaKnown RBP21.13■□□□□ 0.97
CHMP1A-209ENST00000550872 RPS6KA4O75676 772 aa21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 INTS5Q6P9B9 1019 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms