RNA–Protein interactions for RNA: ENST00000550016.5

DDX54-207, Transcript of DEAD-box helicase 54, humanhuman

TSL 5

Gene DDX54, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-207ENST00000550016 ATG3Q9NT62 314 aa25.63■■□□□ 1.69
DDX54-207ENST00000550016 LRRC4BQ9NT99 713 aa25.63■■□□□ 1.69
DDX54-207ENST00000550016 HTATSF1O43719 755 aaKnown RBP25.62■■□□□ 1.69
DDX54-207ENST00000550016 NFE2L2Q16236 605 aa25.62■■□□□ 1.69
DDX54-207ENST00000550016 RTF1Q92541 710 aaKnown RBP25.62■■□□□ 1.69
DDX54-207ENST00000550016 RUNDC1Q96C34 613 aa25.61■■□□□ 1.69
DDX54-207ENST00000550016 CCNL1Q9UK58 526 aaPredicted RBP25.61■■□□□ 1.69
DDX54-207ENST00000550016 PAPPAQ13219 1627 aa25.59■■□□□ 1.69
DDX54-207ENST00000550016 CEMIPQ8WUJ3 1361 aa25.59■■□□□ 1.69
DDX54-207ENST00000550016 KCNQ4P56696 695 aa25.59■■□□□ 1.69
DDX54-207ENST00000550016 TEFQ10587 303 aa25.59■■□□□ 1.69
DDX54-207ENST00000550016 CCDC146Q8IYE0 955 aa25.59■■□□□ 1.69
DDX54-207ENST00000550016 C5P01031 1676 aa25.58■■□□□ 1.69
DDX54-207ENST00000550016 PNISRQ8TF01 805 aaKnown RBP25.58■■□□□ 1.69
DDX54-207ENST00000550016 LOC102724428A0A0B4J2F2 783 aa25.57■■□□□ 1.68
DDX54-207ENST00000550016 HMGB2P26583 209 aaKnown RBP25.57■■□□□ 1.68
DDX54-207ENST00000550016 SIK1P57059 783 aa25.57■■□□□ 1.68
DDX54-207ENST00000550016 ZNF831Q5JPB2 1677 aa25.57■■□□□ 1.68
DDX54-207ENST00000550016 TMPOP42166 694 aaKnown RBP25.56■■□□□ 1.68
DDX54-207ENST00000550016 R3HDM1Q15032 1099 aaKnown RBP25.56■■□□□ 1.68
DDX54-207ENST00000550016 MCM10Q7L590 875 aa25.56■■□□□ 1.68
DDX54-207ENST00000550016 ANO8Q9HCE9 1232 aaPredicted RBP25.56■■□□□ 1.68
DDX54-207ENST00000550016 STK32BQ9NY57 414 aa25.56■■□□□ 1.68
DDX54-207ENST00000550016 PSDA5PKW4 1024 aaPredicted RBP25.55■■□□□ 1.68
DDX54-207ENST00000550016 RIPK4P57078 832 aa25.54■■□□□ 1.68
DDX54-207ENST00000550016 DCTN1Q14203 1278 aa25.54■■□□□ 1.68
DDX54-207ENST00000550016 RBM42Q9BTD8 480 aaKnown RBP25.54■■□□□ 1.68
DDX54-207ENST00000550016 SLC15A2Q16348 729 aa25.53■■□□□ 1.68
DDX54-207ENST00000550016 DIEXFQ68CQ4 756 aaKnown RBP25.53■■□□□ 1.68
DDX54-207ENST00000550016 UBR2Q8IWV8 1755 aa25.52■■□□□ 1.68
DDX54-207ENST00000550016 ATP6V1AP38606 617 aa25.52■■□□□ 1.68
DDX54-207ENST00000550016 SLC39A6Q13433 755 aa25.52■■□□□ 1.68
DDX54-207ENST00000550016 QSER1Q2KHR3 1735 aa25.51■■□□□ 1.68
DDX54-207ENST00000550016 PTCD1O75127 700 aaKnown RBP25.51■■□□□ 1.67
DDX54-207ENST00000550016 AKT1S1Q96B36 256 aa25.51■■□□□ 1.67
DDX54-207ENST00000550016 TUBGCP6Q96RT7 1819 aa25.51■■□□□ 1.67
DDX54-207ENST00000550016 C4BP0C0L5 1744 aa25.5■■□□□ 1.67
DDX54-207ENST00000550016 LMOD3Q0VAK6 560 aa25.5■■□□□ 1.67
DDX54-207ENST00000550016 RRP7AQ9Y3A4 280 aaKnown RBP25.5■■□□□ 1.67
DDX54-207ENST00000550016 ZNF827Q17R98 1081 aa25.49■■□□□ 1.67
DDX54-207ENST00000550016 SLC4A9Q96Q91 983 aa25.49■■□□□ 1.67
DDX54-207ENST00000550016 COL5A3P25940 1745 aaPredicted RBP25.49■■□□□ 1.67
DDX54-207ENST00000550016 BTBD11A6QL63 1104 aa25.48■■□□□ 1.67
DDX54-207ENST00000550016 ITPK1Q13572 414 aa25.48■■□□□ 1.67
DDX54-207ENST00000550016 TAF7Q15545 349 aaPredicted RBP25.48■■□□□ 1.67
DDX54-207ENST00000550016 NEUROD2Q15784 382 aa25.48■■□□□ 1.67
DDX54-207ENST00000550016 ZNF790Q6PG37 636 aa25.47■■□□□ 1.67
DDX54-207ENST00000550016 TTC5Q8N0Z6 440 aa25.47■■□□□ 1.67
DDX54-207ENST00000550016 CICQ96RK0 1608 aaPredicted RBP25.47■■□□□ 1.67
DDX54-207ENST00000550016 KCPQ6ZWJ8 1503 aa25.47■■□□□ 1.67
DDX54-207ENST00000550016 TJP1Q07157 1748 aa25.46■■□□□ 1.67
DDX54-207ENST00000550016 APAF1O14727 1248 aa25.46■■□□□ 1.67
DDX54-207ENST00000550016 LINC00116Q8NCU8 138 aa25.46■■□□□ 1.67
DDX54-207ENST00000550016 THUMPD2Q9BTF0 503 aaKnown RBP25.46■■□□□ 1.67
DDX54-207ENST00000550016 TFCP2L1Q9NZI6 479 aa25.45■■□□□ 1.66
DDX54-207ENST00000550016 CASZ1Q86V15 1759 aa25.45■■□□□ 1.66
DDX54-207ENST00000550016 UBR3Q6ZT12 1888 aa25.45■■□□□ 1.66
DDX54-207ENST00000550016 MYH14Q7Z406 1995 aaKnown RBP25.44■■□□□ 1.66
DDX54-207ENST00000550016 TRIM35Q9UPQ4 493 aa25.44■■□□□ 1.66
DDX54-207ENST00000550016 CCER2I3L3R5 266 aa25.43■■□□□ 1.66
DDX54-207ENST00000550016 KDM3BQ7LBC6 1761 aa25.43■■□□□ 1.66
DDX54-207ENST00000550016 FAM9BQ8IZU0 186 aa25.42■■□□□ 1.66
DDX54-207ENST00000550016 VSIG10Q8N0Z9 540 aa25.42■■□□□ 1.66
DDX54-207ENST00000550016 AK7Q96M32 723 aa25.42■■□□□ 1.66
DDX54-207ENST00000550016 KCNQ3O43525 872 aa25.41■■□□□ 1.66
DDX54-207ENST00000550016 ZNF496Q96IT1 587 aaPredicted RBP25.41■■□□□ 1.66
DDX54-207ENST00000550016 RC3H1Q5TC82 1133 aaKnown RBP25.4■■□□□ 1.66
DDX54-207ENST00000550016 FMNL2Q96PY5 1086 aa25.4■■□□□ 1.66
DDX54-207ENST00000550016 DNAJC10Q8IXB1 793 aa25.39■■□□□ 1.66
DDX54-207ENST00000550016 PDGFDQ9GZP0 370 aaPredicted RBP25.39■■□□□ 1.66
DDX54-207ENST00000550016 MIS18AQ9NYP9 233 aa25.39■■□□□ 1.66
DDX54-207ENST00000550016 PNPLA7Q6ZV29 1317 aa25.38■■□□□ 1.65
DDX54-207ENST00000550016 HEG1Q9ULI3 1381 aa25.38■■□□□ 1.65
DDX54-207ENST00000550016 CNTNAP4Q9C0A0 1308 aa25.37■■□□□ 1.65
DDX54-207ENST00000550016 FLAD1Q8NFF5 587 aa25.37■■□□□ 1.65
DDX54-207ENST00000550016 MIER1Q8N108 512 aa25.36■■□□□ 1.65
DDX54-207ENST00000550016 TEX13AQ9BXU3 409 aaPredicted RBP25.36■■□□□ 1.65
DDX54-207ENST00000550016 BABAM1Q9NWV8 329 aa25.36■■□□□ 1.65
DDX54-207ENST00000550016 GNPATO15228 680 aa25.35■■□□□ 1.65
DDX54-207ENST00000550016 CYP19A1P11511 503 aaPredicted RBP25.35■■□□□ 1.65
DDX54-207ENST00000550016 CRKLP46109 303 aaKnown RBP25.35■■□□□ 1.65
DDX54-207ENST00000550016 COL23A1Q86Y22 540 aaPredicted RBP25.34■■□□□ 1.65
DDX54-207ENST00000550016 STARD3NLO95772 234 aa25.33■■□□□ 1.65
DDX54-207ENST00000550016 SSFA2P28290 1259 aa25.33■■□□□ 1.65
DDX54-207ENST00000550016 SLC16A10Q8TF71 515 aa25.33■■□□□ 1.65
DDX54-207ENST00000550016 TSPYL4Q9UJ04 414 aa25.33■■□□□ 1.65
DDX54-207ENST00000550016 RTCBQ9Y3I0 505 aaKnown RBP25.33■■□□□ 1.65
DDX54-207ENST00000550016 MSH5O43196 834 aa25.32■■□□□ 1.64
DDX54-207ENST00000550016 RPS6KA4O75676 772 aa25.32■■□□□ 1.64
DDX54-207ENST00000550016 NCBP3Q53F19 620 aaKnown RBP25.32■■□□□ 1.64
DDX54-207ENST00000550016 INTS5Q6P9B9 1019 aaKnown RBP25.32■■□□□ 1.64
DDX54-207ENST00000550016 AMIGO3Q86WK7 504 aa25.32■■□□□ 1.64
DDX54-207ENST00000550016 CCDC87Q9NVE4 849 aa25.32■■□□□ 1.64
DDX54-207ENST00000550016 LRP5O75197 1615 aa25.31■■□□□ 1.64
DDX54-207ENST00000550016 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.31■■□□□ 1.64
DDX54-207ENST00000550016 SNRPA1P09661 255 aaKnown RBP25.31■■□□□ 1.64
DDX54-207ENST00000550016 CALD1Q05682 793 aaKnown RBP25.31■■□□□ 1.64
DDX54-207ENST00000550016 CCDC27Q2M243 656 aa25.31■■□□□ 1.64
DDX54-207ENST00000550016 SENP3-EIF4A1A0A087X0R7 540 aa25.3■■□□□ 1.64
DDX54-207ENST00000550016 CHL1O00533 1208 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms