RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PPIP5K1Q6PFW1 1433 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 RIOK3O14730 519 aaKnown RBP9.96□□□□□ -0.82
DEPDC4-208ENST00000549341 BRD4O60885 1362 aaPredicted RBP9.96□□□□□ -0.82
DEPDC4-208ENST00000549341 CPSF1Q10570 1443 aaKnown RBP9.96□□□□□ -0.82
DEPDC4-208ENST00000549341 TOPAZ1Q8N9V7 1692 aa9.96□□□□□ -0.82
DEPDC4-208ENST00000549341 PLEKHG3A1L390 1219 aa9.95□□□□□ -0.82
DEPDC4-208ENST00000549341 EXOC5O00471 708 aa9.95□□□□□ -0.82
DEPDC4-208ENST00000549341 YBX3P16989 372 aaKnown RBP eCLIP9.95□□□□□ -0.82
DEPDC4-208ENST00000549341 GPBP1L1Q9HC44 474 aaPredicted RBP9.95□□□□□ -0.82
DEPDC4-208ENST00000549341 AXIN2Q9Y2T1 843 aa9.95□□□□□ -0.82
DEPDC4-208ENST00000549341 HSPA6P17066 643 aa9.94□□□□□ -0.82
DEPDC4-208ENST00000549341 LSM11P83369 360 aaKnown RBP eCLIP9.94□□□□□ -0.82
DEPDC4-208ENST00000549341 MS4A4AQ96JQ5 239 aa9.94□□□□□ -0.82
DEPDC4-208ENST00000549341 PAPPAQ13219 1627 aa9.93□□□□□ -0.82
DEPDC4-208ENST00000549341 SLIT3O75094 1523 aa9.93□□□□□ -0.82
DEPDC4-208ENST00000549341 CARD10Q9BWT7 1032 aa9.93□□□□□ -0.82
DEPDC4-208ENST00000549341 ARHGEF28Q8N1W1 1705 aaKnown RBP9.93□□□□□ -0.82
DEPDC4-208ENST00000549341 USP6P35125 1406 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 CHD4Q14839 1912 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 PNPLA7Q6ZV29 1317 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 GRIN3BO60391 1043 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 PBX2P40425 430 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 LRRC4BQ9NT99 713 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 TFCP2L1Q9NZI6 479 aa9.92□□□□□ -0.82
DEPDC4-208ENST00000549341 KCNQ4P56696 695 aa9.91□□□□□ -0.82
DEPDC4-208ENST00000549341 SBF2Q86WG5 1849 aa9.91□□□□□ -0.82
DEPDC4-208ENST00000549341 CCDC7Q96M83 1385 aa9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 MSL1Q68DK7 614 aa9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 ZFP91Q96JP5 570 aaPredicted RBP9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 CABP1Q9NZU7 370 aa9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 WWC3Q9ULE0 1092 aa9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 ABCC6O95255 1503 aa9.9□□□□□ -0.82
DEPDC4-208ENST00000549341 NHSQ6T4R5 1651 aa9.9□□□□□ -0.83
DEPDC4-208ENST00000549341 WNK3Q9BYP7 1800 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 AKAP12Q02952 1782 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 ARHGEF25Q86VW2 580 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 SLC16A10Q8TF71 515 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 L3MBTL2Q969R5 705 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 SYTL4Q96C24 671 aaPredicted RBP9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 NLRP2Q9NX02 1062 aa9.89□□□□□ -0.83
DEPDC4-208ENST00000549341 DIEXFQ68CQ4 756 aaKnown RBP9.88□□□□□ -0.83
DEPDC4-208ENST00000549341 STAC3Q96MF2 364 aa9.88□□□□□ -0.83
DEPDC4-208ENST00000549341 ADCY9O60503 1353 aa9.88□□□□□ -0.83
DEPDC4-208ENST00000549341 CENPJQ9HC77 1338 aaPredicted RBP9.87□□□□□ -0.83
DEPDC4-208ENST00000549341 KCNH5Q8NCM2 988 aa9.87□□□□□ -0.83
DEPDC4-208ENST00000549341 TAOK2Q9UL54 1235 aa9.87□□□□□ -0.83
DEPDC4-208ENST00000549341 PIK3C2AO00443 1686 aa9.87□□□□□ -0.83
DEPDC4-208ENST00000549341 TRPM1Q7Z4N2 1603 aa9.86□□□□□ -0.83
DEPDC4-208ENST00000549341 IL2RBP14784 551 aa9.86□□□□□ -0.83
DEPDC4-208ENST00000549341 SLC27A3Q5K4L6 730 aa9.86□□□□□ -0.83
DEPDC4-208ENST00000549341 DDX54Q8TDD1 881 aaKnown RBP9.85□□□□□ -0.83
DEPDC4-208ENST00000549341 KHSRPQ92945 711 aaKnown RBP eCLIP9.85□□□□□ -0.83
DEPDC4-208ENST00000549341 HCSTQ9UBK5 93 aa9.85□□□□□ -0.83
DEPDC4-208ENST00000549341 TTC21BQ7Z4L5 1316 aa9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 COL18A1P39060 1754 aa9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 NFAT5O94916 1531 aa9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 APLP1P51693 650 aa9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 EIF4G2P78344 907 aaKnown RBP eCLIP9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 NBPF1Q3BBV0 1214 aa9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 CCNL1Q9UK58 526 aaPredicted RBP9.84□□□□□ -0.83
DEPDC4-208ENST00000549341 QRICH2Q9H0J4 1663 aa9.83□□□□□ -0.84
DEPDC4-208ENST00000549341 RNF25Q96BH1 459 aaPredicted RBP9.83□□□□□ -0.84
DEPDC4-208ENST00000549341 PLA2G2EQ9NZK7 142 aa9.83□□□□□ -0.84
DEPDC4-208ENST00000549341 BTAF1O14981 1849 aa9.82□□□□□ -0.84
DEPDC4-208ENST00000549341 KIF3CO14782 793 aa9.82□□□□□ -0.84
DEPDC4-208ENST00000549341 COL23A1Q86Y22 540 aaPredicted RBP9.82□□□□□ -0.84
DEPDC4-208ENST00000549341 ANKRD24Q8TF21 1146 aa9.82□□□□□ -0.84
DEPDC4-208ENST00000549341 PRIM1P49642 420 aaKnown RBP9.81□□□□□ -0.84
DEPDC4-208ENST00000549341 COL13A1Q5TAT6 717 aaPredicted RBP9.81□□□□□ -0.84
DEPDC4-208ENST00000549341 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.81□□□□□ -0.84
DEPDC4-208ENST00000549341 IGSF1Q8N6C5 1336 aa9.81□□□□□ -0.84
DEPDC4-208ENST00000549341 TTC21AQ8NDW8 1320 aa9.81□□□□□ -0.84
DEPDC4-208ENST00000549341 SLC34A2O95436 690 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 NUDT7P0C024 238 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 TNS4Q8IZW8 715 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 FBXO22Q8NEZ5 403 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 LTV1Q96GA3 475 aaPredicted RBP9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 CD2APQ9Y5K6 639 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 EVC2Q86UK5 1308 aa9.8□□□□□ -0.84
DEPDC4-208ENST00000549341 NSD2O96028 1365 aa9.79□□□□□ -0.84
DEPDC4-208ENST00000549341 KTN1Q86UP2 1357 aaKnown RBP9.79□□□□□ -0.84
DEPDC4-208ENST00000549341 ANKRD36BQ8N2N9 1353 aa9.79□□□□□ -0.84
DEPDC4-208ENST00000549341 HTRA3P83110 453 aa9.79□□□□□ -0.84
DEPDC4-208ENST00000549341 USP47Q96K76 1375 aa9.78□□□□□ -0.84
DEPDC4-208ENST00000549341 PHF14O94880 888 aa9.78□□□□□ -0.84
DEPDC4-208ENST00000549341 NME9Q86XW9 330 aa9.78□□□□□ -0.84
DEPDC4-208ENST00000549341 C2orf72A6NCS6 295 aa9.77□□□□□ -0.85
DEPDC4-208ENST00000549341 LHX6Q9UPM6 363 aa9.77□□□□□ -0.85
DEPDC4-208ENST00000549341 TUBGCP6Q96RT7 1819 aa9.77□□□□□ -0.85
DEPDC4-208ENST00000549341 PCNTO95613 3336 aa9.77□□□□□ -0.85
DEPDC4-208ENST00000549341 HSPA5P11021 654 aaKnown RBP9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 DNAJC5GQ8N7S2 189 aa9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 CARD11Q9BXL7 1154 aa9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 NMRK2Q9NPI5 230 aa9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 PCDHGA4Q9Y5G9 962 aa9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 QSER1Q2KHR3 1735 aa9.76□□□□□ -0.85
DEPDC4-208ENST00000549341 ROCK2O75116 1388 aaKnown RBP9.75□□□□□ -0.85
DEPDC4-208ENST00000549341 TOMM70O94826 608 aa9.75□□□□□ -0.85
DEPDC4-208ENST00000549341 AK7Q96M32 723 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms