RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 MSL1Q68DK7 614 aa30.85■■■□□ 2.53
CHD4-214ENST00000545942 KDM6AO15550 1401 aaPredicted RBP30.84■■■□□ 2.53
CHD4-214ENST00000545942 CABP4P57796 275 aa30.82■■■□□ 2.52
CHD4-214ENST00000545942 ITPK1Q13572 414 aa30.82■■■□□ 2.52
CHD4-214ENST00000545942 AMIGO3Q86WK7 504 aa30.82■■■□□ 2.52
CHD4-214ENST00000545942 NPC1L1Q9UHC9 1359 aa30.82■■■□□ 2.52
CHD4-214ENST00000545942 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.81■■■□□ 2.52
CHD4-214ENST00000545942 PHF14O94880 888 aa30.81■■■□□ 2.52
CHD4-214ENST00000545942 SSFA2P28290 1259 aa30.81■■■□□ 2.52
CHD4-214ENST00000545942 UTRNP46939 3433 aa30.8■■■□□ 2.52
CHD4-214ENST00000545942 GNPATO15228 680 aa30.77■■■□□ 2.52
CHD4-214ENST00000545942 DIAPH1O60610 1272 aaKnown RBP30.77■■■□□ 2.52
CHD4-214ENST00000545942 GPR162Q16538 588 aa30.77■■■□□ 2.52
CHD4-214ENST00000545942 SMIM5Q71RC9 77 aa30.77■■■□□ 2.52
CHD4-214ENST00000545942 RBM42Q9BTD8 480 aaKnown RBP30.77■■■□□ 2.52
CHD4-214ENST00000545942 UBR3Q6ZT12 1888 aa30.77■■■□□ 2.52
CHD4-214ENST00000545942 NLGN2Q8NFZ4 835 aa30.76■■■□□ 2.52
CHD4-214ENST00000545942 HMOX1P09601 288 aa30.74■■■□□ 2.51
CHD4-214ENST00000545942 CNGB1Q14028 1251 aaPredicted RBP30.74■■■□□ 2.51
CHD4-214ENST00000545942 AKAP4Q5JQC9 854 aa30.74■■■□□ 2.51
CHD4-214ENST00000545942 SLC4A9Q96Q91 983 aa30.74■■■□□ 2.51
CHD4-214ENST00000545942 NFATC2IPQ8NCF5 419 aa30.73■■■□□ 2.51
CHD4-214ENST00000545942 ZNF831Q5JPB2 1677 aa30.71■■■□□ 2.51
CHD4-214ENST00000545942 PELP1Q8IZL8 1130 aaKnown RBP30.71■■■□□ 2.51
CHD4-214ENST00000545942 CD2APQ9Y5K6 639 aa30.71■■■□□ 2.51
CHD4-214ENST00000545942 RTCBQ9Y3I0 505 aaKnown RBP30.7■■■□□ 2.5
CHD4-214ENST00000545942 RC3H1Q5TC82 1133 aaKnown RBP30.69■■■□□ 2.5
CHD4-214ENST00000545942 PTCD1O75127 700 aaKnown RBP30.68■■■□□ 2.5
CHD4-214ENST00000545942 CNTNAP4Q9C0A0 1308 aa30.67■■■□□ 2.5
CHD4-214ENST00000545942 COL3A1P02461 1466 aaPredicted RBP30.66■■■□□ 2.5
CHD4-214ENST00000545942 TRAPPC3LQ5T215 181 aa30.66■■■□□ 2.5
CHD4-214ENST00000545942 MTHFSDQ2M296 383 aaKnown RBP30.65■■■□□ 2.5
CHD4-214ENST00000545942 SLC52A2Q9HAB3 445 aa30.65■■■□□ 2.5
CHD4-214ENST00000545942 ADRA2BP18089 450 aa30.64■■■□□ 2.5
CHD4-214ENST00000545942 LGR6Q9HBX8 967 aa30.64■■■□□ 2.5
CHD4-214ENST00000545942 SCN11AQ9UI33 1791 aa30.63■■■□□ 2.49
CHD4-214ENST00000545942 U2SURPO15042 1029 aaKnown RBP30.63■■■□□ 2.49
CHD4-214ENST00000545942 GOLGB1Q14789 3259 aaKnown RBP30.63■■■□□ 2.49
CHD4-214ENST00000545942 RNMTO43148 476 aaKnown RBP30.62■■■□□ 2.49
CHD4-214ENST00000545942 RPS6KA4O75676 772 aa30.62■■■□□ 2.49
CHD4-214ENST00000545942 COL5A3P25940 1745 aaPredicted RBP30.62■■■□□ 2.49
CHD4-214ENST00000545942 ZNF784Q8NCA9 323 aaPredicted RBP30.61■■■□□ 2.49
CHD4-214ENST00000545942 MRC1P22897 1456 aa30.6■■■□□ 2.49
CHD4-214ENST00000545942 GRIN3BO60391 1043 aa30.6■■■□□ 2.49
CHD4-214ENST00000545942 YBX3P16989 372 aaKnown RBP eCLIP30.6■■■□□ 2.49
CHD4-214ENST00000545942 ARHGEF1Q92888 912 aaKnown RBP30.6■■■□□ 2.49
CHD4-214ENST00000545942 CHD4Q14839 1912 aa30.59■■■□□ 2.49
CHD4-214ENST00000545942 RFC4P35249 363 aa30.58■■■□□ 2.49
CHD4-214ENST00000545942 CRKLP46109 303 aaKnown RBP30.58■■■□□ 2.49
CHD4-214ENST00000545942 CFAP53Q96M91 514 aa30.58■■■□□ 2.49
CHD4-214ENST00000545942 MMP10P09238 476 aa30.57■■■□□ 2.48
CHD4-214ENST00000545942 NLGN1Q8N2Q7 840 aa30.57■■■□□ 2.48
CHD4-214ENST00000545942 CICQ96RK0 1608 aaPredicted RBP30.54■■■□□ 2.48
CHD4-214ENST00000545942 GAS2L2Q8NHY3 880 aa30.53■■■□□ 2.48
CHD4-214ENST00000545942 ADAMTS7Q9UKP4 1686 aa30.53■■■□□ 2.48
CHD4-214ENST00000545942 GYS1P13807 737 aa30.52■■■□□ 2.48
CHD4-214ENST00000545942 SLC39A6Q13433 755 aa30.52■■■□□ 2.48
CHD4-214ENST00000545942 TJP1Q07157 1748 aa30.52■■■□□ 2.48
CHD4-214ENST00000545942 MYH14Q7Z406 1995 aaKnown RBP30.51■■■□□ 2.47
CHD4-214ENST00000545942 PPP2R1AP30153 589 aa30.5■■■□□ 2.47
CHD4-214ENST00000545942 DNAJC10Q8IXB1 793 aa30.5■■■□□ 2.47
CHD4-214ENST00000545942 GNAT3A8MTJ3 354 aa30.49■■■□□ 2.47
CHD4-214ENST00000545942 INTS5Q6P9B9 1019 aaKnown RBP30.49■■■□□ 2.47
CHD4-214ENST00000545942 NUDCQ9Y266 331 aa30.49■■■□□ 2.47
CHD4-214ENST00000545942 CCDC87Q9NVE4 849 aa30.48■■■□□ 2.47
CHD4-214ENST00000545942 KCPQ6ZWJ8 1503 aa30.47■■■□□ 2.47
CHD4-214ENST00000545942 VSIG10Q8N0Z9 540 aa30.47■■■□□ 2.47
CHD4-214ENST00000545942 CYP19A1P11511 503 aaPredicted RBP30.46■■■□□ 2.47
CHD4-214ENST00000545942 PRKAR2BP31323 418 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 TEFQ10587 303 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 IL17REQ8NFR9 667 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 RSPH6AQ9H0K4 717 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 PARP3Q9Y6F1 533 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 C4AP0C0L4 1744 aa30.46■■■□□ 2.47
CHD4-214ENST00000545942 USP42Q9H9J4 1324 aaKnown RBP30.45■■■□□ 2.47
CHD4-214ENST00000545942 SRP68Q9UHB9 627 aaKnown RBP30.45■■■□□ 2.46
CHD4-214ENST00000545942 VIRMAQ69YN4 1812 aaKnown RBP30.44■■■□□ 2.46
CHD4-214ENST00000545942 TTC5Q8N0Z6 440 aa30.44■■■□□ 2.46
CHD4-214ENST00000545942 PHACTR3Q96KR7 559 aa30.43■■■□□ 2.46
CHD4-214ENST00000545942 WWC3Q9ULE0 1092 aa30.43■■■□□ 2.46
CHD4-214ENST00000545942 C10orf71Q711Q0 1435 aa30.42■■■□□ 2.46
CHD4-214ENST00000545942 SOS1Q07889 1333 aaPredicted RBP30.42■■■□□ 2.46
CHD4-214ENST00000545942 U2AF1L5P0DN76 240 aaPredicted RBP30.42■■■□□ 2.46
CHD4-214ENST00000545942 TGFB2P61812 414 aa30.42■■■□□ 2.46
CHD4-214ENST00000545942 U2AF1Q01081 240 aaKnown RBP eCLIP30.42■■■□□ 2.46
CHD4-214ENST00000545942 FKBP8Q14318 412 aa30.4■■■□□ 2.46
CHD4-214ENST00000545942 PXDNLA1KZ92 1463 aa30.39■■■□□ 2.46
CHD4-214ENST00000545942 ZPR1O75312 459 aa30.39■■■□□ 2.46
CHD4-214ENST00000545942 ZNF790Q6PG37 636 aa30.39■■■□□ 2.46
CHD4-214ENST00000545942 CEMIPQ8WUJ3 1361 aa30.38■■■□□ 2.45
CHD4-214ENST00000545942 FCHSD2O94868 740 aa30.38■■■□□ 2.45
CHD4-214ENST00000545942 ZBTB1Q9Y2K1 713 aa30.38■■■□□ 2.45
CHD4-214ENST00000545942 KIF13BQ9NQT8 1826 aa30.37■■■□□ 2.45
CHD4-214ENST00000545942 UBR2Q8IWV8 1755 aa30.37■■■□□ 2.45
CHD4-214ENST00000545942 ZNF496Q96IT1 587 aaPredicted RBP30.36■■■□□ 2.45
CHD4-214ENST00000545942 COL15A1P39059 1388 aa30.36■■■□□ 2.45
CHD4-214ENST00000545942 A0A0G2JLW4 131 aa30.35■■■□□ 2.45
CHD4-214ENST00000545942 STARD3NLO95772 234 aa30.35■■■□□ 2.45
CHD4-214ENST00000545942 USPL1Q5W0Q7 1092 aa30.35■■■□□ 2.45
CHD4-214ENST00000545942 HEG1Q9ULI3 1381 aa30.34■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms