RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	PCDHGA4	Q9Y5G9	962 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	SPATA31A1	Q5TZJ5	1347 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	USP31	Q70CQ4	1352 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	PEAK1	Q9H792	1746 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	OVOS2	A0A0J9YW53	1432 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	OVOS2	Q6IE36	1432 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	ST20-MTHFS	A0A0A6YYL1	179 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	SNPH	O15079	494 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	FAM98C	Q17RN3	349 aa	Known RBP	10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	AK7	Q96M32	723 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	DAXX	Q9UER7	740 aa	Predicted RBP	10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	RGPD4	Q7Z3J3	1758 aa		10.79	□□□□□ -0.68
SNHG1-223	ENST00000545440	ANKRD26	Q9UPS8	1709 aa		10.78	□□□□□ -0.68
SNHG1-223	ENST00000545440	CRB1	P82279	1406 aa		10.78	□□□□□ -0.68
SNHG1-223	ENST00000545440	FCHSD2	O94868	740 aa		10.78	□□□□□ -0.68
SNHG1-223	ENST00000545440	KRT27	Q7Z3Y8	459 aa		10.78	□□□□□ -0.68
SNHG1-223	ENST00000545440	KCNH5	Q8NCM2	988 aa		10.78	□□□□□ -0.68
SNHG1-223	ENST00000545440	RREB1	Q92766	1687 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440		A0A0G2JS52	829 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	PHF14	O94880	888 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	MYT1	Q01538	1121 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	ZSWIM6	Q9HCJ5	1215 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	STRN4	Q9NRL3	753 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	TERF2IP	Q9NYB0	399 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	RGPD2	P0DJD1	1756 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	ANKRD36B	Q8N2N9	1353 aa		10.77	□□□□□ -0.69
SNHG1-223	ENST00000545440	OSBP	P22059	807 aa		10.76	□□□□□ -0.69
SNHG1-223	ENST00000545440	NEUROD2	Q15784	382 aa		10.76	□□□□□ -0.69
SNHG1-223	ENST00000545440	TMC1	Q8TDI8	760 aa		10.76	□□□□□ -0.69
SNHG1-223	ENST00000545440	EVA1C	P58658	441 aa		10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	TMF1	P82094	1093 aa		10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	LARP1	Q6PKG0	1096 aa	Known RBP	10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	FBXW7	Q969H0	707 aa		10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	SLC12A5	Q9H2X9	1139 aa		10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	THRAP3	Q9Y2W1	955 aa	Known RBP	10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	DISP2	A7MBM2	1401 aa		10.75	□□□□□ -0.69
SNHG1-223	ENST00000545440	MAP3K7	O43318	606 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	HIC1	Q14526	733 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	TYW1B	Q6NUM6	668 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	ARHGEF25	Q86VW2	580 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	TCP11L2	Q8N4U5	519 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	NUP188	Q5SRE5	1749 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	WDR17	Q8IZU2	1322 aa		10.74	□□□□□ -0.69
SNHG1-223	ENST00000545440	MAP2	P11137	1827 aa	Known RBP	10.73	□□□□□ -0.69
SNHG1-223	ENST00000545440	CDCA8	Q53HL2	280 aa		10.73	□□□□□ -0.69
SNHG1-223	ENST00000545440	NME9	Q86XW9	330 aa		10.73	□□□□□ -0.69
SNHG1-223	ENST00000545440	CCER1	Q8TC90	406 aa	Predicted RBP	10.73	□□□□□ -0.69
SNHG1-223	ENST00000545440	USP35	Q9P2H5	1018 aa		10.73	□□□□□ -0.69
SNHG1-223	ENST00000545440	ZBTB7C	A1YPR0	619 aa		10.72	□□□□□ -0.69
SNHG1-223	ENST00000545440	SF3B2	Q13435	895 aa	Known RBP	10.72	□□□□□ -0.69
SNHG1-223	ENST00000545440	SHANK3	Q9BYB0	1731 aa		10.72	□□□□□ -0.69
SNHG1-223	ENST00000545440	KAT6B	Q8WYB5	2073 aa		10.72	□□□□□ -0.69
SNHG1-223	ENST00000545440	GNPAT	O15228	680 aa		10.71	□□□□□ -0.69
SNHG1-223	ENST00000545440	NHS	Q6T4R5	1651 aa		10.71	□□□□□ -0.69
SNHG1-223	ENST00000545440	CCDC7	Q96M83	1385 aa		10.71	□□□□□ -0.69
SNHG1-223	ENST00000545440	LRP5	O75197	1615 aa		10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	OVOS2	A0A0G2JMS6	1433 aa		10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	PSD	A5PKW4	1024 aa	Predicted RBP	10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	TMEM132A	Q24JP5	1023 aa		10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	TOM1L2	Q6ZVM7	507 aa		10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	AXIN2	Q9Y2T1	843 aa		10.7	□□□□□ -0.7
SNHG1-223	ENST00000545440	TNS2	Q63HR2	1409 aa		10.69	□□□□□ -0.7
SNHG1-223	ENST00000545440	ERBB3	P21860	1342 aa		10.69	□□□□□ -0.7
SNHG1-223	ENST00000545440	EN1	Q05925	392 aa	Predicted RBP	10.69	□□□□□ -0.7
SNHG1-223	ENST00000545440	FAM196A	Q6ZSG2	479 aa		10.69	□□□□□ -0.7
SNHG1-223	ENST00000545440	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.69	□□□□□ -0.7
SNHG1-223	ENST00000545440	BCL9	O00512	1426 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	RTL1	A6NKG5	1358 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	PARD3	Q8TEW0	1356 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	C11orf95	C9JLR9	678 aa	Predicted RBP	10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	BAG6	P46379	1132 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	MAP2K5	Q13163	448 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	PDE3B	Q13370	1112 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	CARD10	Q9BWT7	1032 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	BTAF1	O14981	1849 aa		10.68	□□□□□ -0.7
SNHG1-223	ENST00000545440	CSB-PGBD3	P0DP91	1061 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	ARSI	Q5FYB1	569 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	FAM182B	Q5T319	152 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	DEFB132	Q7Z7B7	95 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	ZNF454	Q8N9F8	522 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	COG3	Q96JB2	828 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	DOT1L	Q8TEK3	1739 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	NSD3	Q9BZ95	1437 aa		10.67	□□□□□ -0.7
SNHG1-223	ENST00000545440	NUDT7	P0C024	238 aa		10.66	□□□□□ -0.7
SNHG1-223	ENST00000545440	PKD1L3	Q7Z443	1732 aa		10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	BRPF1	P55201	1214 aa	Predicted RBP	10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	PTGDR	Q13258	359 aa		10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	DDB1	Q16531	1140 aa		10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	ZDHHC16	Q969W1	377 aa		10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	PCDHGA10	Q9Y5H3	936 aa		10.65	□□□□□ -0.7
SNHG1-223	ENST00000545440	KIF24	Q5T7B8	1368 aa		10.65	□□□□□ -0.71
SNHG1-223	ENST00000545440	MAP3K19	Q56UN5	1328 aa		10.64	□□□□□ -0.71
SNHG1-223	ENST00000545440	POTEB2	H3BUK9	544 aa		10.64	□□□□□ -0.71
SNHG1-223	ENST00000545440	FYB1	O15117	783 aa		10.64	□□□□□ -0.71
SNHG1-223	ENST00000545440	TRIM37	O94972	964 aa		10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms