RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	ACIN1	Q9UKV3	1341 aa	Known RBP	10.32	□□□□□ -0.76
LDHA-223	ENST00000545215	C19orf67	A6NJJ6	358 aa		10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	DAPK1	P53355	1430 aa		10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	NHS	Q6T4R5	1651 aa		10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	MCOLN1	Q9GZU1	580 aa		10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	STK26	Q9P289	416 aa		10.31	□□□□□ -0.76
LDHA-223	ENST00000545215	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.3	□□□□□ -0.76
LDHA-223	ENST00000545215	DPYSL4	O14531	572 aa		10.3	□□□□□ -0.76
LDHA-223	ENST00000545215	PDIA6	Q15084	440 aa		10.3	□□□□□ -0.76
LDHA-223	ENST00000545215	SLC17A8	Q8NDX2	589 aa		10.3	□□□□□ -0.76
LDHA-223	ENST00000545215	VIRMA	Q69YN4	1812 aa	Known RBP	10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	IFT172	Q9UG01	1749 aa		10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	COL5A2	P05997	1499 aa	Predicted RBP	10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	CPD	O75976	1380 aa		10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	ABCC11	Q96J66	1382 aa		10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	VEGFA	P15692	232 aa	Predicted RBP	10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	ACSBG1	Q96GR2	724 aa		10.29	□□□□□ -0.76
LDHA-223	ENST00000545215	FXR1	P51114	621 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
LDHA-223	ENST00000545215	MAP2K1	Q02750	393 aa	Predicted RBP	10.28	□□□□□ -0.76
LDHA-223	ENST00000545215	DSG2	Q14126	1118 aa		10.28	□□□□□ -0.76
LDHA-223	ENST00000545215	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.28	□□□□□ -0.76
LDHA-223	ENST00000545215	USP6	P35125	1406 aa		10.27	□□□□□ -0.77
LDHA-223	ENST00000545215	ANKRD50	Q9ULJ7	1429 aa		10.27	□□□□□ -0.77
LDHA-223	ENST00000545215	EXOC5	O00471	708 aa		10.27	□□□□□ -0.77
LDHA-223	ENST00000545215	PKD1L3	Q7Z443	1732 aa		10.26	□□□□□ -0.77
LDHA-223	ENST00000545215	BTAF1	O14981	1849 aa		10.26	□□□□□ -0.77
LDHA-223	ENST00000545215	KRI1	Q8N9T8	703 aa	Known RBP	10.26	□□□□□ -0.77
LDHA-223	ENST00000545215	BCS1L	Q9Y276	419 aa		10.26	□□□□□ -0.77
LDHA-223	ENST00000545215	ANKAR	Q7Z5J8	1434 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	KCNQ4	P56696	695 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	FOXK1	P85037	733 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	DPY19L2	Q6NUT2	758 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	MICALL2	Q8IY33	904 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	SIRT1	Q96EB6	747 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	DAXX	Q9UER7	740 aa	Predicted RBP	10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	TRPM1	Q7Z4N2	1603 aa		10.25	□□□□□ -0.77
LDHA-223	ENST00000545215	TRIM66	O15016	1216 aa		10.24	□□□□□ -0.77
LDHA-223	ENST00000545215	TRIM35	Q9UPQ4	493 aa		10.24	□□□□□ -0.77
LDHA-223	ENST00000545215		A0A0C4DFX4	3053 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	GPR37	O15354	613 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	SOX10	P56693	466 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	NUTM2G	Q5VZR2	741 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	TOM1L2	Q6ZVM7	507 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	MPND	Q8N594	471 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	KDM4C	Q9H3R0	1056 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	RNF181	Q9P0P0	153 aa		10.23	□□□□□ -0.77
LDHA-223	ENST00000545215	PRR36	Q9H6K5	1346 aa		10.22	□□□□□ -0.77
LDHA-223	ENST00000545215	PDCD7	Q8N8D1	485 aa	Known RBP	10.22	□□□□□ -0.77
LDHA-223	ENST00000545215	TMC2	Q8TDI7	906 aa		10.22	□□□□□ -0.77
LDHA-223	ENST00000545215	WNK3	Q9BYP7	1800 aa		10.22	□□□□□ -0.77
LDHA-223	ENST00000545215	COL18A1	P39060	1754 aa		10.22	□□□□□ -0.77
LDHA-223	ENST00000545215	RPGRIP1L	Q68CZ1	1315 aa		10.21	□□□□□ -0.77
LDHA-223	ENST00000545215	PDE4D	Q08499	809 aa		10.21	□□□□□ -0.78
LDHA-223	ENST00000545215	HOMEZ	Q8IX15	550 aa		10.21	□□□□□ -0.78
LDHA-223	ENST00000545215	NBPF15	Q8N660	670 aa		10.21	□□□□□ -0.78
LDHA-223	ENST00000545215	KNDC1	Q76NI1	1749 aa		10.21	□□□□□ -0.78
LDHA-223	ENST00000545215	PIK3C2A	O00443	1686 aa		10.2	□□□□□ -0.78
LDHA-223	ENST00000545215	GLTPD2	A6NH11	291 aa		10.2	□□□□□ -0.78
LDHA-223	ENST00000545215	TGFB2	P61812	414 aa		10.2	□□□□□ -0.78
LDHA-223	ENST00000545215	DGKZ	Q13574	1117 aa		10.2	□□□□□ -0.78
LDHA-223	ENST00000545215	NGDN	Q8NEJ9	315 aa	Known RBP	10.2	□□□□□ -0.78
LDHA-223	ENST00000545215	POTEC	B2RU33	542 aa		10.19	□□□□□ -0.78
LDHA-223	ENST00000545215	IL27	Q8NEV9	243 aa		10.19	□□□□□ -0.78
LDHA-223	ENST00000545215	FLAD1	Q8NFF5	587 aa		10.19	□□□□□ -0.78
LDHA-223	ENST00000545215	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.19	□□□□□ -0.78
LDHA-223	ENST00000545215	CUL9	Q8IWT3	2517 aa		10.19	□□□□□ -0.78
LDHA-223	ENST00000545215	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.19	□□□□□ -0.78
LDHA-223	ENST00000545215		A0A0G2JLW4	131 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	FCHSD2	O94868	740 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	TMEM132E	Q6IEE7	984 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	BEGAIN	Q9BUH8	593 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	SPATA31E1	Q6ZUB1	1445 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	PASK	Q96RG2	1323 aa		10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	WDR33	Q9C0J8	1336 aa	Known RBP	10.18	□□□□□ -0.78
LDHA-223	ENST00000545215	ADAMTS7	Q9UKP4	1686 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	RASSF10	A6NK89	507 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	TMEM88B	A6NKF7	163 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	GALR2	O43603	387 aa	Predicted RBP	10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	GC	P02774	474 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	DEFB115	Q30KQ5	88 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	PLPP6	Q8IY26	295 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	WDR17	Q8IZU2	1322 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	QRICH2	Q9H0J4	1663 aa		10.17	□□□□□ -0.78
LDHA-223	ENST00000545215	KIAA1551	Q9HCM1	1747 aa		10.16	□□□□□ -0.78
LDHA-223	ENST00000545215	CARD10	Q9BWT7	1032 aa		10.15	□□□□□ -0.78
LDHA-223	ENST00000545215	KIF1B	O60333	1816 aa		10.15	□□□□□ -0.78
LDHA-223	ENST00000545215	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.15	□□□□□ -0.79
LDHA-223	ENST00000545215	NUP155	O75694	1391 aa		10.15	□□□□□ -0.79
LDHA-223	ENST00000545215	C2orf72	A6NCS6	295 aa		10.14	□□□□□ -0.79
LDHA-223	ENST00000545215	IRX5	P78411	483 aa	Predicted RBP	10.14	□□□□□ -0.79
LDHA-223	ENST00000545215	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.14	□□□□□ -0.79
LDHA-223	ENST00000545215	SBF1	O95248	1867 aa		10.14	□□□□□ -0.79
LDHA-223	ENST00000545215	TSKS	Q9UJT2	592 aa		10.13	□□□□□ -0.79
LDHA-223	ENST00000545215	CCNL1	Q9UK58	526 aa	Predicted RBP	10.13	□□□□□ -0.79
LDHA-223	ENST00000545215	BOLA1	Q9Y3E2	137 aa		10.13	□□□□□ -0.79
LDHA-223	ENST00000545215	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.13	□□□□□ -0.79
LDHA-223	ENST00000545215	LY75	O60449	1722 aa		10.13	□□□□□ -0.79
LDHA-223	ENST00000545215	KIF13B	Q9NQT8	1826 aa		10.12	□□□□□ -0.79
LDHA-223	ENST00000545215	SMIM5	Q71RC9	77 aa		10.12	□□□□□ -0.79

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